Wall clock time and date at job start Sat Apr 11 2020 07:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9 13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9 14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10 15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11 16 16 H 1.09000 * 110.59817 * 80.79446 * 15 14 13 17 17 N 1.46502 * 110.48904 * 203.37812 * 15 14 13 18 18 C 1.34775 * 120.00117 * 269.77993 * 17 15 14 19 19 O 1.21586 * 119.99844 * 359.97438 * 18 17 15 20 20 C 1.47562 * 119.99764 * 179.97438 * 18 17 15 21 21 C 1.40120 * 120.59109 * 0.02562 * 20 18 17 22 22 N 1.30608 * 121.17119 * 179.97438 * 21 20 18 23 23 C 1.34915 * 122.44831 * 359.97438 * 22 21 20 24 24 C 1.40614 * 128.45757 * 179.97438 * 23 22 21 25 25 C 1.32286 * 115.90626 * 180.02562 * 24 23 22 26 26 S 1.75503 * 110.83805 * 0.02562 * 25 24 23 27 27 C 1.40095 * 119.27043 * 0.02562 * 23 22 21 28 28 C 1.39361 * 119.75389 * 359.74140 * 27 23 22 29 29 C 1.53877 * 110.03508 * 174.99756 * 11 10 9 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09000 * 110.48832 * 335.78097 * 13 11 10 35 35 H 1.09000 * 110.48619 * 98.42458 * 13 11 10 36 36 H 1.09003 * 110.75717 * 279.62730 * 14 13 11 37 37 H 1.08997 * 110.91615 * 156.33185 * 14 13 11 38 38 H 0.96997 * 119.99596 * 89.77203 * 17 15 14 39 39 H 1.07998 * 119.41092 * 359.97438 * 21 20 18 40 40 H 1.08002 * 122.05086 * 0.05315 * 24 23 22 41 41 H 1.08008 * 124.57920 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.73530 * 180.25883 * 28 27 23 43 43 H 1.08996 * 110.03408 * 238.57457 * 29 11 10 44 44 H 1.09006 * 110.02846 * 0.02562 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3597 -4.7082 -0.8269 13 6 0.3042 -4.8663 1.3396 14 6 0.1413 -6.3787 1.6316 15 6 1.4871 -6.9683 1.1414 16 1 2.2632 -6.8302 1.8942 17 7 1.3366 -8.3890 0.8167 18 6 1.5490 -9.3231 1.7647 19 8 1.8660 -8.9867 2.8893 20 6 1.3969 -10.7539 1.4378 21 6 1.0326 -11.1553 0.1457 22 7 0.8952 -12.4186 -0.1563 23 6 1.0931 -13.4037 0.7441 24 6 0.9809 -14.7931 0.5590 25 6 1.2326 -15.5399 1.6215 26 16 1.6476 -14.5403 3.0031 27 6 1.4593 -13.0705 2.0546 28 6 1.6192 -11.7322 2.4090 29 6 1.8158 -6.1562 -0.1283 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 0.8880 -4.3869 2.1254 35 1 -0.6711 -4.3893 1.2427 36 1 -0.6918 -6.7941 1.0645 37 1 0.0073 -6.5568 2.6985 38 1 1.0840 -8.6572 -0.0805 39 1 0.8624 -10.4068 -0.6140 40 1 0.7066 -15.2242 -0.3925 41 1 1.1878 -16.6189 1.6369 42 1 1.9052 -11.4576 3.4136 43 1 1.4763 -6.6937 -1.0137 44 1 2.8892 -5.9763 -0.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676944807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:04 Heat of formation + Delta-G solvation = 25.015023 kcal Electronic energy + Delta-G solvation = -26031.057704 eV Core-core repulsion = 22267.526911 eV Total energy + Delta-G solvation = -3763.530792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.21721 -39.86479 -38.17140 -36.20784 -35.10821 -33.72318 -33.04625 -31.25306 -30.35289 -28.77967 -27.63903 -25.51997 -24.40716 -23.91377 -22.40913 -22.32746 -21.06843 -20.63312 -19.62977 -18.95794 -17.53842 -17.28676 -17.15317 -16.70328 -16.25826 -15.53600 -15.26212 -15.01930 -14.71414 -14.57145 -14.09519 -13.90955 -13.69524 -13.56105 -13.39821 -13.27021 -13.17601 -13.13795 -12.30979 -12.26324 -11.86711 -11.67597 -11.46292 -11.02060 -11.00714 -10.76194 -10.74028 -10.55366 -10.49451 -10.37703 -10.16408 -9.95528 -9.90309 -9.41173 -9.18945 -9.11951 -8.84433 -8.60059 -6.96387 -6.07604 -3.06514 -0.38906 0.47978 0.77872 1.25495 1.35232 2.54172 2.78282 3.30307 3.45421 3.53566 3.57333 3.74699 4.03591 4.16742 4.24432 4.45406 4.53619 4.59999 4.65189 4.75730 4.88594 4.96243 5.11972 5.25672 5.36579 5.41274 5.49032 5.50944 5.51728 5.54128 5.65529 5.77352 5.81664 5.83874 6.01112 6.05269 6.10640 6.20463 6.36594 6.44751 6.55252 6.73678 6.86228 7.15981 7.20815 7.83885 7.86284 8.79140 9.27122 10.13477 10.28803 11.41180 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.041309 B = 0.001583 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.662729 B =17683.487263 C =17919.858849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.047 4.047 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.743 5.743 10 C 0.164 3.836 11 C -0.097 4.097 12 H 0.073 0.927 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.139 3.861 16 H 0.099 0.901 17 N -0.713 5.713 18 C 0.565 3.435 19 O -0.531 6.531 20 C -0.178 4.178 21 C 0.159 3.841 22 N -0.459 5.459 23 C 0.145 3.855 24 C -0.120 4.120 25 C -0.165 4.165 26 S 0.129 5.871 27 C -0.212 4.212 28 C 0.032 3.968 29 C -0.121 4.121 30 H 0.254 0.746 31 H 0.367 0.633 32 H 0.018 0.982 33 H 0.021 0.979 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.399 0.601 39 H 0.167 0.833 40 H 0.156 0.844 41 H 0.180 0.820 42 H 0.154 0.846 43 H 0.068 0.932 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -34.624 2.295 34.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.244 4.244 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.462 4.462 8 H 0.081 0.919 9 N -0.389 5.389 10 C 0.037 3.963 11 C -0.116 4.116 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.035 3.965 16 H 0.117 0.883 17 N -0.364 5.364 18 C 0.351 3.649 19 O -0.408 6.408 20 C -0.187 4.187 21 C -0.014 4.014 22 N -0.167 5.167 23 C 0.011 3.989 24 C -0.150 4.150 25 C -0.302 4.302 26 S 0.393 5.607 27 C -0.330 4.330 28 C 0.002 3.998 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.200 0.800 32 H 0.035 0.965 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.234 0.766 39 H 0.184 0.816 40 H 0.174 0.826 41 H 0.197 0.803 42 H 0.172 0.828 43 H 0.086 0.914 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.002 -33.408 3.764 33.679 hybrid contribution -0.342 -1.330 -1.135 1.782 sum 1.660 -34.738 2.629 34.877 Atomic orbital electron populations 1.70885 1.06014 1.28340 1.53824 1.25769 0.97076 1.00971 1.00570 0.83240 0.74204 0.75627 0.75836 1.21043 1.22298 1.22313 1.20045 0.92024 0.85936 1.48187 0.91852 1.42351 1.04869 1.00944 1.90696 1.20731 0.92933 0.84862 0.97783 1.21906 0.97737 0.93919 0.98082 0.90820 1.22322 1.00883 0.94342 0.97386 1.22892 0.96539 0.96425 1.01323 1.22028 0.98696 0.77615 0.98121 0.88317 1.46030 1.70136 1.06775 1.13495 1.17810 0.77347 0.84619 0.85110 1.90818 1.47086 1.82042 1.20849 1.20918 1.07271 0.94521 0.95996 1.22859 0.92105 0.92467 0.93921 1.67580 1.14316 1.00160 1.34673 1.19272 0.97305 0.93932 0.88385 1.19671 1.04112 0.90175 1.01084 1.25486 1.04419 1.04357 0.95907 1.84439 1.71446 0.93343 1.11496 1.23579 1.10828 0.99103 0.99451 1.21011 0.90265 0.88490 1.00061 1.22406 1.01590 0.95746 0.96216 0.93462 0.80012 0.96454 0.96154 0.90810 0.91361 0.91427 0.91309 0.76573 0.81610 0.82637 0.80301 0.82834 0.91381 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.48 13.70 55.49 0.76 -28.72 16 2 C -0.05 -1.37 5.50 -17.43 -0.10 -1.47 16 3 Si 1.08 26.22 29.92 -169.99 -5.09 21.14 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.33 -9.50 9.99 -15.06 -0.15 -9.65 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.74 -18.82 5.45 -59.91 -0.33 -19.15 16 10 C 0.16 3.29 5.31 -4.05 -0.02 3.27 16 11 C -0.10 -1.48 2.96 -89.50 -0.26 -1.75 16 12 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.67 6.08 -25.07 -0.15 -1.82 16 14 C -0.13 -1.65 6.58 -24.74 -0.16 -1.81 16 15 C 0.14 1.62 3.22 -66.27 -0.21 1.40 16 16 H 0.10 1.33 7.55 -51.93 -0.39 0.93 16 17 N -0.71 -6.74 5.11 -53.23 -0.27 -7.01 16 18 C 0.57 6.34 7.77 -12.46 -0.10 6.25 16 19 O -0.53 -7.88 16.06 5.29 0.08 -7.80 16 20 C -0.18 -1.69 5.89 -104.87 -0.62 -2.31 16 21 C 0.16 1.31 10.69 -17.37 -0.19 1.13 16 22 N -0.46 -4.44 10.39 -11.01 -0.11 -4.55 16 23 C 0.14 1.32 6.97 -84.92 -0.59 0.73 16 24 C -0.12 -0.78 10.16 -40.61 -0.41 -1.19 16 25 C -0.16 -0.79 11.08 28.81 0.32 -0.47 16 26 S 0.13 0.80 23.29 -107.50 -2.50 -1.71 16 27 C -0.21 -1.85 6.49 -38.47 -0.25 -2.10 16 28 C 0.03 0.30 9.73 -38.64 -0.38 -0.08 16 29 C -0.12 -1.41 6.19 -25.62 -0.16 -1.57 16 30 H 0.25 7.79 6.77 -40.82 -0.28 7.51 16 31 H 0.37 9.44 6.38 -40.82 -0.26 9.17 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 34 H 0.07 1.24 7.76 -51.93 -0.40 0.84 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.40 2.59 6.42 -40.82 -0.26 2.32 16 39 H 0.17 0.85 6.41 -52.49 -0.34 0.51 16 40 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.18 0.28 8.06 -52.48 -0.42 -0.14 16 42 H 0.15 1.36 7.72 -52.49 -0.41 0.96 16 43 H 0.07 0.65 7.73 -51.93 -0.40 0.24 16 44 H 0.08 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -35.46 376.92 -10.92 -46.38 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.72 Total: 7.17 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -3.43 Total: -11.43 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.05 Total: -59.43 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.08 Total: -7.80 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.09 Total: 21.14 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.46 -10.92 -46.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676944807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.397 kcal (2) G-P(sol) polarization free energy of solvation -35.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds