Wall clock time and date at job start Sat Apr 11 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47264 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.01514 * 53.60688 * 11 10 9 13 13 C 1.54263 * 110.03243 * 292.16632 * 11 10 9 14 14 C 1.54888 * 104.19606 * 217.10385 * 13 11 10 15 15 C 1.54890 * 102.74845 * 37.93987 * 14 13 11 16 16 H 1.09000 * 110.59817 * 80.79446 * 15 14 13 17 17 N 1.46502 * 110.48904 * 203.37812 * 15 14 13 18 18 C 1.34775 * 120.00117 * 269.77993 * 17 15 14 19 19 O 1.21586 * 119.99844 * 359.97438 * 18 17 15 20 20 C 1.47562 * 119.99764 * 179.97438 * 18 17 15 21 21 C 1.40120 * 120.59109 * 0.02562 * 20 18 17 22 22 N 1.30608 * 121.17119 * 179.97438 * 21 20 18 23 23 C 1.34915 * 122.44831 * 359.97438 * 22 21 20 24 24 C 1.40614 * 128.45757 * 179.97438 * 23 22 21 25 25 C 1.32286 * 115.90626 * 180.02562 * 24 23 22 26 26 S 1.75503 * 110.83805 * 0.02562 * 25 24 23 27 27 C 1.40095 * 119.27043 * 0.02562 * 23 22 21 28 28 C 1.39361 * 119.75389 * 359.74140 * 27 23 22 29 29 C 1.53877 * 110.03508 * 174.99756 * 11 10 9 30 30 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 31 31 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 32 32 H 1.09003 * 109.47433 * 299.99456 * 10 9 7 33 33 H 1.08999 * 109.47686 * 59.99159 * 10 9 7 34 34 H 1.09000 * 110.48832 * 335.78097 * 13 11 10 35 35 H 1.09000 * 110.48619 * 98.42458 * 13 11 10 36 36 H 1.09003 * 110.75717 * 279.62730 * 14 13 11 37 37 H 1.08997 * 110.91615 * 156.33185 * 14 13 11 38 38 H 0.96997 * 119.99596 * 89.77203 * 17 15 14 39 39 H 1.07998 * 119.41092 * 359.97438 * 21 20 18 40 40 H 1.08002 * 122.05086 * 0.05315 * 24 23 22 41 41 H 1.08008 * 124.57920 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.73530 * 180.25883 * 28 27 23 43 43 H 1.08996 * 110.03408 * 238.57457 * 29 11 10 44 44 H 1.09006 * 110.02846 * 0.02562 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0637 -4.8197 -0.0022 12 1 0.3597 -4.7082 -0.8269 13 6 0.3042 -4.8663 1.3396 14 6 0.1413 -6.3787 1.6316 15 6 1.4871 -6.9683 1.1414 16 1 2.2632 -6.8302 1.8942 17 7 1.3366 -8.3890 0.8167 18 6 1.5490 -9.3231 1.7647 19 8 1.8660 -8.9867 2.8893 20 6 1.3969 -10.7539 1.4378 21 6 1.0326 -11.1553 0.1457 22 7 0.8952 -12.4186 -0.1563 23 6 1.0931 -13.4037 0.7441 24 6 0.9809 -14.7931 0.5590 25 6 1.2326 -15.5399 1.6215 26 16 1.6476 -14.5403 3.0031 27 6 1.4593 -13.0705 2.0546 28 6 1.6192 -11.7322 2.4090 29 6 1.8158 -6.1562 -0.1283 30 1 -0.4850 -0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6841 -3.7150 0.8887 34 1 0.8880 -4.3869 2.1254 35 1 -0.6711 -4.3893 1.2427 36 1 -0.6918 -6.7941 1.0645 37 1 0.0073 -6.5568 2.6985 38 1 1.0840 -8.6572 -0.0805 39 1 0.8624 -10.4068 -0.6140 40 1 0.7066 -15.2242 -0.3925 41 1 1.1878 -16.6189 1.6369 42 1 1.9052 -11.4576 3.4136 43 1 1.4763 -6.6937 -1.0137 44 1 2.8892 -5.9763 -0.1886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676944807.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:03 Heat of formation + Delta-G solvation = 1.564291 kcal Electronic energy + Delta-G solvation = -26032.074604 eV Core-core repulsion = 22267.526911 eV Total energy + Delta-G solvation = -3764.547692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.91178 -40.72851 -39.30955 -36.78449 -36.75394 -35.05723 -33.71440 -32.93828 -31.15926 -30.08655 -28.83915 -26.35602 -25.79814 -24.84180 -24.19364 -23.00158 -21.86033 -21.54597 -20.88909 -19.71882 -19.27270 -18.22970 -17.92552 -17.34958 -17.13006 -16.88294 -16.37197 -15.99958 -15.74386 -15.46738 -15.34351 -15.16586 -15.02566 -14.90811 -14.43275 -14.30354 -14.04011 -13.69456 -13.62287 -13.10625 -12.85569 -12.79894 -12.60641 -12.51652 -12.13469 -12.10364 -11.86868 -11.82813 -11.77809 -11.64980 -11.49966 -11.41289 -11.17295 -10.90621 -10.61335 -10.23652 -9.85627 -9.11216 -9.09501 -8.40146 -5.33087 -0.99945 -0.14863 0.26562 0.78766 0.80781 1.58286 1.68403 1.78121 1.84953 1.94256 2.62628 2.71649 2.92691 3.39293 3.41465 3.47577 3.52007 3.57787 3.63704 3.81615 3.89931 3.98348 4.01883 4.31252 4.39391 4.41931 4.45141 4.54325 4.57861 4.62165 4.67659 4.71983 4.85161 4.88785 4.97136 5.01668 5.02267 5.07080 5.16526 5.24843 5.32186 5.44636 5.47638 5.58927 6.38767 6.50243 6.58649 7.05189 7.10908 8.02059 8.12503 9.12168 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.041309 B = 0.001583 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.662729 B =17683.487263 C =17919.858849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.104 4.104 3 Si 1.128 2.872 4 H -0.292 1.292 5 H -0.280 1.280 6 H -0.277 1.277 7 C -0.338 4.338 8 H 0.064 0.936 9 N -0.755 5.755 10 C 0.161 3.839 11 C -0.088 4.088 12 H 0.076 0.924 13 C -0.110 4.110 14 C -0.122 4.122 15 C 0.147 3.853 16 H 0.078 0.922 17 N -0.698 5.698 18 C 0.569 3.431 19 O -0.574 6.574 20 C -0.191 4.191 21 C 0.165 3.835 22 N -0.479 5.479 23 C 0.134 3.866 24 C -0.142 4.142 25 C -0.140 4.140 26 S 0.141 5.859 27 C -0.235 4.235 28 C 0.025 3.975 29 C -0.109 4.109 30 H 0.244 0.756 31 H 0.362 0.638 32 H 0.020 0.980 33 H 0.013 0.987 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.416 0.584 39 H 0.196 0.804 40 H 0.172 0.828 41 H 0.217 0.783 42 H 0.149 0.851 43 H 0.102 0.898 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 -37.061 1.148 37.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.296 4.296 3 Si 0.953 3.047 4 H -0.218 1.218 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.469 4.469 8 H 0.082 0.918 9 N -0.400 5.400 10 C 0.035 3.965 11 C -0.107 4.107 12 H 0.094 0.906 13 C -0.149 4.149 14 C -0.161 4.161 15 C 0.042 3.958 16 H 0.097 0.903 17 N -0.349 5.349 18 C 0.356 3.644 19 O -0.455 6.455 20 C -0.200 4.200 21 C -0.008 4.008 22 N -0.187 5.187 23 C 0.000 4.000 24 C -0.171 4.171 25 C -0.277 4.277 26 S 0.405 5.595 27 C -0.352 4.352 28 C -0.005 4.005 29 C -0.147 4.147 30 H 0.054 0.946 31 H 0.194 0.806 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.256 0.744 39 H 0.213 0.787 40 H 0.189 0.811 41 H 0.233 0.767 42 H 0.167 0.833 43 H 0.120 0.880 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.448 -35.907 2.586 36.083 hybrid contribution -0.447 -0.725 -0.724 1.118 sum 2.000 -36.632 1.862 36.734 Atomic orbital electron populations 1.70994 1.07096 1.27868 1.56256 1.27223 0.97162 1.04646 1.00529 0.82626 0.73390 0.71598 0.77121 1.21759 1.20579 1.20257 1.20418 0.92363 0.87375 1.46774 0.91803 1.42561 1.04859 1.01967 1.90613 1.20922 0.93799 0.84597 0.97177 1.21796 0.96916 0.93912 0.98089 0.90592 1.22235 0.99874 0.96115 0.96647 1.22793 0.97721 0.94368 1.01172 1.21750 0.97568 0.78792 0.97664 0.90343 1.45801 1.69431 1.05543 1.14158 1.18038 0.76381 0.85416 0.84554 1.90799 1.49226 1.82743 1.22682 1.20762 1.09047 0.93284 0.96875 1.23261 0.90860 0.92785 0.93855 1.67642 1.15319 1.00663 1.35122 1.19767 0.96819 0.95041 0.88422 1.19880 1.05573 0.89213 1.02479 1.25956 1.01520 1.05832 0.94344 1.84437 1.70913 0.92342 1.11800 1.23757 1.11572 0.99623 1.00217 1.21101 0.90166 0.89213 1.00020 1.22308 1.01215 0.93759 0.97461 0.94561 0.80623 0.96248 0.96908 0.93336 0.92308 0.89471 0.92222 0.74449 0.78709 0.81065 0.76662 0.83300 0.87958 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.74 13.70 21.65 0.30 -61.44 16 2 C -0.10 -6.18 5.50 84.86 0.47 -5.71 16 3 Si 1.13 52.73 29.92 68.60 2.05 54.78 16 4 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.34 -19.54 9.99 84.03 0.84 -18.70 16 8 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 9 N -0.76 -38.85 5.45 -343.47 -1.87 -40.73 16 10 C 0.16 6.47 5.31 86.38 0.46 6.93 16 11 C -0.09 -2.61 2.96 -10.07 -0.03 -2.64 16 12 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 13 C -0.11 -3.35 6.08 31.67 0.19 -3.16 16 14 C -0.12 -2.93 6.58 31.89 0.21 -2.72 16 15 C 0.15 3.24 3.22 46.06 0.15 3.39 16 16 H 0.08 2.11 7.55 -2.39 -0.02 2.10 16 17 N -0.70 -11.93 5.11 -440.59 -2.25 -14.18 16 18 C 0.57 12.48 7.77 86.70 0.67 13.15 16 19 O -0.57 -17.43 16.06 -3.99 -0.06 -17.49 16 20 C -0.19 -3.52 5.89 -20.02 -0.12 -3.63 16 21 C 0.17 2.47 10.69 85.33 0.91 3.38 16 22 N -0.48 -8.61 10.39 -188.74 -1.96 -10.57 16 23 C 0.13 2.26 6.97 39.70 0.28 2.54 16 24 C -0.14 -1.54 10.16 21.79 0.22 -1.32 16 25 C -0.14 -0.93 11.08 66.76 0.74 -0.19 16 26 S 0.14 1.52 23.29 -56.49 -1.32 0.21 16 27 C -0.23 -3.94 6.49 22.99 0.15 -3.79 16 28 C 0.02 0.47 9.73 22.88 0.22 0.69 16 29 C -0.11 -2.31 6.19 31.32 0.19 -2.11 16 30 H 0.24 15.37 6.77 -92.71 -0.63 14.74 16 31 H 0.36 19.10 6.38 -92.71 -0.59 18.51 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.01 0.54 8.00 -2.39 -0.02 0.52 16 34 H 0.05 1.70 7.76 -2.39 -0.02 1.68 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.42 4.10 6.42 -92.71 -0.60 3.51 16 39 H 0.20 1.45 6.41 -2.91 -0.02 1.43 16 40 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.22 -0.25 8.06 -2.91 -0.02 -0.28 16 42 H 0.15 2.81 7.72 -2.91 -0.02 2.78 16 43 H 0.10 1.52 7.73 -2.39 -0.02 1.51 16 44 H 0.08 1.67 7.67 -2.38 -0.02 1.65 16 Total: -1.00 -78.56 376.92 0.45 -78.11 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.01 Total: 25.19 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 5.56 Total: -13.88 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -5.79 Total: -126.92 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.06 Total: -17.49 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 2.05 Total: 54.78 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.32 Total: 0.21 kcal Total: -78.56 0.45 -78.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676944807.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.675 kcal (2) G-P(sol) polarization free energy of solvation -78.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds