Wall clock time and date at job start Sat Apr 11 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30702 * 122.10603 * 2 1 4 4 C 1.30565 * 115.90882 * 180.02562 * 3 2 1 5 5 C 1.47256 * 125.54322 * 179.97438 * 4 3 2 6 6 O 1.21623 * 119.99845 * 0.02562 * 5 4 3 7 7 N 1.34769 * 120.00164 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00237 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46998 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47395 * 65.00358 * 9 8 7 11 11 N 1.46493 * 109.47189 * 304.99881 * 9 8 7 12 12 C 1.36940 * 120.00317 * 155.00273 * 11 9 8 13 13 H 1.07999 * 119.99727 * 359.97438 * 12 11 9 14 14 C 1.38806 * 120.00128 * 180.02562 * 12 11 9 15 15 N 1.31615 * 120.00100 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99731 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47243 * 59.99623 * 16 14 12 18 18 H 1.48508 * 109.47083 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47192 * 299.99550 * 16 14 12 20 20 C 1.50699 * 109.46610 * 185.00081 * 9 8 7 21 21 C 1.38233 * 120.00138 * 79.72985 * 20 9 8 22 22 C 1.38243 * 119.99912 * 179.78517 * 21 20 9 23 23 C 1.38237 * 119.99625 * 0.43883 * 22 21 20 24 24 C 1.38230 * 120.00550 * 359.81117 * 23 22 21 25 25 C 1.38238 * 119.99895 * 259.99670 * 20 9 8 26 26 S 1.76098 * 108.91425 * 0.26781 * 4 3 2 27 27 C 1.34235 * 122.11526 * 180.02562 * 2 1 3 28 28 C 1.50707 * 125.44863 * 359.97438 * 27 2 1 29 29 H 1.08995 * 109.47514 * 89.97928 * 1 2 3 30 30 H 1.09006 * 109.46415 * 209.97064 * 1 2 3 31 31 H 1.08991 * 109.47032 * 329.96837 * 1 2 3 32 32 H 0.97010 * 119.99854 * 0.02562 * 7 5 4 33 33 H 1.08993 * 109.47452 * 60.00368 * 8 7 5 34 34 H 1.09000 * 109.47175 * 300.00158 * 8 7 5 35 35 H 0.97003 * 120.00120 * 335.00451 * 11 9 8 36 36 H 0.97006 * 119.99764 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.00256 * 359.97438 * 21 20 9 38 38 H 1.07997 * 119.99849 * 180.27025 * 22 21 20 39 39 H 1.07999 * 119.99259 * 179.83654 * 23 22 21 40 40 H 1.07999 * 120.00228 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.99861 * 359.97438 * 25 20 9 42 42 H 1.09003 * 109.47196 * 90.00368 * 28 27 2 43 43 H 1.08998 * 109.46745 * 209.99781 * 28 27 2 44 44 H 1.08996 * 109.46881 * 330.00068 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2016 1.1071 0.0000 4 6 3.4997 0.9662 -0.0005 5 6 4.4800 2.0650 -0.0012 6 8 4.0989 3.2199 -0.0008 7 7 5.7995 1.7908 -0.0012 8 6 6.7749 2.8839 -0.0012 9 6 8.1908 2.3040 -0.0018 10 1 8.3622 1.7647 -0.9334 11 7 8.3429 1.3856 1.1293 12 6 9.2738 0.3827 1.0767 13 1 9.8956 0.2686 0.2011 14 6 9.4175 -0.4878 2.1482 15 7 8.6593 -0.3490 3.2151 16 14 10.6879 -1.8555 2.0766 17 1 12.0406 -1.2662 1.9091 18 1 10.6426 -2.6396 3.3370 19 1 10.3907 -2.7475 0.9272 20 6 9.1920 3.4235 0.1219 21 6 9.4534 3.9835 1.3584 22 6 10.3751 5.0075 1.4726 23 6 11.0287 5.4774 0.3488 24 6 10.7636 4.9210 -0.8884 25 6 9.8451 3.8941 -1.0019 26 16 3.8873 -0.7516 -0.0089 27 6 2.2206 -1.1369 -0.0005 28 6 1.6454 -2.5299 -0.0006 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3632 -0.8903 0.5134 31 1 -0.3633 0.8896 0.5143 32 1 6.1035 0.8695 -0.0011 33 1 6.6335 3.4971 0.8887 34 1 6.6334 3.4971 -0.8912 35 1 7.7841 1.4879 1.9156 36 1 8.7600 -0.9572 3.9641 37 1 8.9397 3.6191 2.2358 38 1 10.5825 5.4420 2.4393 39 1 11.7469 6.2792 0.4377 40 1 11.2740 5.2885 -1.7664 41 1 9.6380 3.4592 -1.9686 42 1 1.5064 -2.8656 -1.0283 43 1 2.3296 -3.2055 0.5128 44 1 0.6844 -2.5262 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691799414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:15 Heat of formation + Delta-G solvation = 23.210173 kcal Electronic energy + Delta-G solvation = -26860.468926 eV Core-core repulsion = 23096.859869 eV Total energy + Delta-G solvation = -3763.609056 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44332 -40.57595 -39.94226 -37.44038 -35.34254 -34.34262 -33.68081 -31.68869 -31.17898 -30.82206 -29.54566 -27.28932 -25.97592 -25.35437 -24.06498 -23.20868 -22.06191 -21.43773 -20.08046 -19.49289 -19.23872 -18.23613 -17.68729 -17.03067 -16.94857 -16.60441 -16.08408 -15.80286 -15.69638 -15.64151 -15.08958 -14.86923 -14.61731 -14.22025 -14.11609 -14.05372 -13.99384 -13.91249 -13.78309 -13.42704 -13.28130 -12.89424 -12.84195 -12.75811 -12.47559 -12.17808 -12.12425 -12.03198 -11.83368 -11.70085 -11.60022 -10.97953 -10.78333 -10.51106 -10.32856 -9.67676 -9.65560 -9.52593 -9.02963 -7.89931 -5.20125 -0.88410 0.06995 0.54822 0.59172 0.66218 1.18991 1.50742 1.52712 1.57686 1.74365 2.05240 2.58007 3.02426 3.27685 3.45271 3.72304 3.78428 3.87146 3.98295 4.01435 4.16662 4.21837 4.34290 4.34648 4.42352 4.54686 4.65327 4.66888 4.74871 4.79442 4.79503 4.82018 4.92538 5.01060 5.03024 5.15083 5.29228 5.31864 5.34629 5.57330 5.70503 5.74692 5.94693 6.17577 6.26703 6.30090 6.56952 6.89692 7.37709 8.03712 8.30927 9.31835 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.003453 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.621314 B = 8105.974272 C =10414.757677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.021 3.979 3 N -0.424 5.424 4 C -0.049 4.049 5 C 0.593 3.407 6 O -0.553 6.553 7 N -0.696 5.696 8 C 0.131 3.869 9 C 0.204 3.796 10 H 0.076 0.924 11 N -0.720 5.720 12 C -0.233 4.233 13 H 0.076 0.924 14 C -0.059 4.059 15 N -0.962 5.962 16 Si 0.960 3.040 17 H -0.287 1.287 18 H -0.301 1.301 19 H -0.274 1.274 20 C -0.100 4.100 21 C -0.110 4.110 22 C -0.137 4.137 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.125 4.125 26 S 0.221 5.779 27 C -0.217 4.217 28 C -0.080 4.080 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.411 0.589 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.375 0.625 36 H 0.249 0.751 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -0.844 -9.887 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 N -0.142 5.142 4 C -0.322 4.322 5 C 0.376 3.624 6 O -0.431 6.431 7 N -0.348 5.348 8 C 0.007 3.993 9 C 0.094 3.906 10 H 0.094 0.906 11 N -0.359 5.359 12 C -0.364 4.364 13 H 0.094 0.906 14 C -0.252 4.252 15 N -0.612 5.612 16 Si 0.790 3.210 17 H -0.214 1.214 18 H -0.227 1.227 19 H -0.199 1.199 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.155 4.155 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.143 4.143 26 S 0.477 5.523 27 C -0.340 4.340 28 C -0.139 4.139 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.248 0.752 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.207 0.793 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.145 0.855 39 H 0.161 0.839 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.496 -0.161 -9.953 13.087 hybrid contribution -0.048 -0.875 0.987 1.320 sum -8.544 -1.036 -8.965 12.428 Atomic orbital electron populations 1.20514 0.84414 1.04355 1.04086 1.20786 1.00429 0.85345 1.05084 1.66486 1.03951 1.32604 1.11128 1.26943 0.94120 0.96776 1.14411 1.16922 0.81951 0.86588 0.76919 1.90776 1.79989 1.21191 1.51139 1.45692 1.04052 1.11796 1.73288 1.21624 0.86761 0.88449 1.02496 1.19559 0.89737 0.88627 0.92647 0.90598 1.42504 1.43584 1.32755 1.17095 1.19426 1.11679 1.04684 1.00632 0.90624 1.25328 1.01467 1.01985 0.96438 1.69793 1.43471 1.40859 1.07085 0.85424 0.79328 0.79800 0.76427 1.21417 1.22741 1.19946 1.20811 0.99095 0.96719 0.93759 1.20959 0.98531 0.96059 0.97265 1.21340 0.97171 0.97354 0.99671 1.21390 1.00209 1.00751 0.92508 1.21414 0.98075 0.96560 0.98368 1.21292 0.97205 0.97639 0.98204 1.84147 1.04928 1.00408 1.62834 1.26092 0.97047 1.03464 1.07417 1.20579 1.02253 0.86097 1.04963 0.89311 0.87781 0.91431 0.75206 0.92504 0.89356 0.79254 0.94175 0.88577 0.85523 0.83895 0.83545 0.84600 0.87981 0.89974 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.02 71.24 0.71 -0.55 16 2 C 0.02 0.54 6.68 41.81 0.28 0.82 16 3 N -0.42 -14.43 10.57 -178.24 -1.88 -16.31 16 4 C -0.05 -1.68 7.46 87.25 0.65 -1.03 16 5 C 0.59 22.52 7.81 86.62 0.68 23.20 16 6 O -0.55 -24.39 17.07 -4.10 -0.07 -24.46 16 7 N -0.70 -24.28 5.38 -466.54 -2.51 -26.79 16 8 C 0.13 4.49 5.21 86.38 0.45 4.94 16 9 C 0.20 7.36 2.64 44.25 0.12 7.48 16 10 H 0.08 2.61 7.94 -2.39 -0.02 2.59 16 11 N -0.72 -32.35 3.81 -326.51 -1.24 -33.59 16 12 C -0.23 -11.66 9.92 84.03 0.83 -10.83 16 13 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 14 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 15 N -0.96 -55.04 13.06 21.65 0.28 -54.75 16 16 Si 0.96 43.59 29.55 68.60 2.03 45.62 16 17 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C -0.10 -3.51 4.92 -19.87 -0.10 -3.61 16 21 C -0.11 -4.05 9.32 22.27 0.21 -3.84 16 22 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 23 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 24 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 25 C -0.12 -3.64 9.67 22.27 0.22 -3.43 16 26 S 0.22 5.88 22.28 -56.49 -1.26 4.62 16 27 C -0.22 -4.74 6.36 24.77 0.16 -4.58 16 28 C -0.08 -0.98 10.04 71.24 0.72 -0.27 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.10 1.11 6.60 -2.38 -0.02 1.09 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 14.12 7.28 -92.70 -0.68 13.44 16 33 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.37 18.68 7.80 -92.71 -0.72 17.96 16 36 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 37 H 0.10 3.98 7.73 -2.91 -0.02 3.96 16 38 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 39 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 40 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 41 H 0.14 3.31 8.04 -2.91 -0.02 3.29 16 42 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.11 0.86 6.65 -2.39 -0.02 0.85 16 Total: -1.00 -69.72 389.93 1.04 -68.68 By element: Atomic # 1 Polarization: 42.01 SS G_CDS: -0.35 Total: 41.66 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 6.06 Total: -4.67 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -5.36 Total: -131.45 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.07 Total: -24.46 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -1.26 Total: 4.62 kcal Total: -69.72 1.04 -68.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691799414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.889 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds