Wall clock time and date at job start Sat Apr 11 2020 07:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30705 * 122.11264 * 2 1 4 4 C 1.30551 * 115.91246 * 180.02562 * 3 2 1 5 5 C 1.47254 * 125.54682 * 180.02562 * 4 3 2 6 6 O 1.21619 * 119.99858 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00258 * 179.97438 * 5 4 3 8 8 C 1.46498 * 119.99914 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46967 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.47570 * 295.00289 * 9 8 7 11 11 N 1.46507 * 109.47045 * 55.00693 * 9 8 7 12 12 C 1.36935 * 119.99742 * 205.00075 * 11 9 8 13 13 H 1.07999 * 120.00083 * 359.97438 * 12 11 9 14 14 C 1.38817 * 119.99986 * 179.97438 * 12 11 9 15 15 N 1.31617 * 119.99464 * 0.27719 * 14 12 11 16 16 Si 1.86800 * 119.99902 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47364 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46883 * 120.00276 * 16 14 12 19 19 H 1.48497 * 109.46870 * 240.00086 * 16 14 12 20 20 C 1.50706 * 109.46984 * 175.00042 * 9 8 7 21 21 C 1.38236 * 120.00007 * 279.72707 * 20 9 8 22 22 C 1.38236 * 119.99909 * 179.79031 * 21 20 9 23 23 C 1.38235 * 119.99640 * 0.43835 * 22 21 20 24 24 C 1.38238 * 120.00463 * 359.81507 * 23 22 21 25 25 C 1.38232 * 119.99750 * 359.97438 * 24 23 22 26 26 S 1.76104 * 108.91375 * 0.27092 * 4 3 2 27 27 C 1.34236 * 122.10717 * 180.02562 * 2 1 3 28 28 C 1.50695 * 125.45400 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47295 * 89.96871 * 1 2 3 30 30 H 1.08998 * 109.47082 * 209.96998 * 1 2 3 31 31 H 1.09007 * 109.46966 * 329.96659 * 1 2 3 32 32 H 0.96998 * 120.00029 * 0.02562 * 7 5 4 33 33 H 1.08995 * 109.47278 * 60.00770 * 8 7 5 34 34 H 1.08999 * 109.47319 * 300.00694 * 8 7 5 35 35 H 0.96999 * 120.00180 * 24.99002 * 11 9 8 36 36 H 0.97001 * 120.00638 * 359.71685 * 15 14 12 37 37 H 1.08004 * 119.99921 * 359.97438 * 21 20 9 38 38 H 1.07994 * 119.99924 * 180.27852 * 22 21 20 39 39 H 1.08000 * 119.99832 * 179.83172 * 23 22 21 40 40 H 1.07999 * 120.00414 * 179.97438 * 24 23 22 41 41 H 1.07994 * 120.00128 * 179.97438 * 25 24 23 42 42 H 1.08998 * 109.47214 * 90.00505 * 28 27 2 43 43 H 1.09003 * 109.47245 * 210.00500 * 28 27 2 44 44 H 1.09003 * 109.47309 * 330.00154 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2018 1.1071 0.0000 4 6 3.4997 0.9661 -0.0005 5 6 4.4801 2.0647 -0.0001 6 8 4.0992 3.2197 0.0013 7 7 5.7997 1.7904 -0.0002 8 6 6.7751 2.8835 -0.0003 9 6 8.1909 2.3035 -0.0011 10 1 8.3630 1.7636 0.9300 11 7 8.3421 1.3857 -1.1330 12 6 9.2729 0.3827 -1.0815 13 1 9.8959 0.2685 -0.2067 14 6 9.4159 -0.4873 -2.1537 15 7 8.6604 -0.3447 -3.2219 16 14 10.6862 -1.8551 -2.0837 17 1 11.4057 -1.7966 -0.7859 18 1 10.0064 -3.1691 -2.2135 19 1 11.6558 -1.6874 -3.1958 20 6 9.1922 3.4230 -0.1251 21 6 9.4609 3.9760 -1.3632 22 6 10.3762 5.0058 -1.4762 23 6 11.0293 5.4764 -0.3525 24 6 10.7645 4.9199 0.8849 25 6 9.8460 3.8931 0.9986 26 16 3.8872 -0.7518 -0.0090 27 6 2.2204 -1.1371 -0.0005 28 6 1.6453 -2.5299 -0.0006 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5144 32 1 6.1035 0.8692 -0.0009 33 1 6.6338 3.4966 0.8896 34 1 6.6335 3.4967 -0.8903 35 1 7.7827 1.4884 -1.9187 36 1 8.0009 0.3657 -3.2584 37 1 8.9536 3.6055 -2.2417 38 1 10.5828 5.4409 -2.4428 39 1 11.7464 6.2791 -0.4412 40 1 11.2751 5.2873 1.7628 41 1 9.6394 3.4580 1.9651 42 1 1.5063 -2.8656 -1.0282 43 1 2.3293 -3.2056 0.5129 44 1 0.6841 -2.5262 0.5136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691799415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:20 Heat of formation + Delta-G solvation = 22.912790 kcal Electronic energy + Delta-G solvation = -26913.345431 eV Core-core repulsion = 23149.723479 eV Total energy + Delta-G solvation = -3763.621952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50773 -40.65686 -40.01863 -37.61880 -35.58847 -34.39969 -33.78017 -31.74116 -31.03888 -30.85314 -29.53987 -27.26689 -25.95219 -25.36302 -24.17840 -23.28938 -22.14581 -21.59623 -20.12309 -19.55312 -19.41552 -18.33551 -17.88514 -17.06036 -17.00805 -16.52341 -16.35727 -15.91162 -15.74308 -15.56751 -15.42222 -14.91581 -14.78545 -14.29184 -14.16798 -14.13528 -14.02766 -13.88918 -13.80109 -13.51975 -13.29240 -12.86411 -12.73349 -12.72273 -12.54565 -12.16170 -12.09573 -11.86830 -11.78618 -11.72463 -11.28359 -11.00794 -10.83538 -10.56456 -10.42183 -9.73906 -9.71416 -9.59565 -9.13476 -8.31816 -5.29547 -0.93687 0.01602 0.49801 0.52256 0.59113 1.13343 1.61643 1.65734 1.71197 1.82301 1.98692 2.71401 2.95156 3.21153 3.45955 3.60207 3.68742 3.83051 3.88874 3.95330 4.06660 4.13300 4.23425 4.27352 4.34987 4.52074 4.55804 4.62322 4.70367 4.71841 4.74609 4.76739 4.89868 4.91963 5.00939 5.06064 5.21474 5.24091 5.31716 5.64098 5.65339 5.67628 5.87168 6.08881 6.21166 6.51187 6.53996 6.81280 7.07447 7.96828 8.08785 9.18352 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.003454 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.242733 B = 8103.608798 C =10397.322515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.021 3.979 3 N -0.422 5.422 4 C -0.051 4.051 5 C 0.594 3.406 6 O -0.551 6.551 7 N -0.698 5.698 8 C 0.130 3.870 9 C 0.209 3.791 10 H 0.073 0.927 11 N -0.731 5.731 12 C -0.318 4.318 13 H 0.067 0.933 14 C -0.092 4.092 15 N -0.973 5.973 16 Si 1.123 2.877 17 H -0.273 1.273 18 H -0.290 1.290 19 H -0.300 1.300 20 C -0.102 4.102 21 C -0.111 4.111 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.125 4.125 26 S 0.218 5.782 27 C -0.214 4.214 28 C -0.081 4.081 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.360 0.640 36 H 0.244 0.756 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -0.758 10.351 13.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 N -0.140 5.140 4 C -0.324 4.324 5 C 0.377 3.623 6 O -0.429 6.429 7 N -0.351 5.351 8 C 0.006 3.994 9 C 0.100 3.900 10 H 0.091 0.909 11 N -0.373 5.373 12 C -0.449 4.449 13 H 0.085 0.915 14 C -0.284 4.284 15 N -0.621 5.621 16 Si 0.950 3.050 17 H -0.198 1.198 18 H -0.217 1.217 19 H -0.228 1.228 20 C -0.105 4.105 21 C -0.130 4.130 22 C -0.154 4.154 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.144 4.144 26 S 0.473 5.527 27 C -0.337 4.337 28 C -0.140 4.140 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.088 0.912 32 H 0.247 0.753 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.193 0.807 36 H 0.055 0.945 37 H 0.111 0.889 38 H 0.146 0.854 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.535 -1.257 9.732 12.372 hybrid contribution -1.419 1.230 -0.052 1.879 sum -8.954 -0.026 9.680 13.186 Atomic orbital electron populations 1.20524 0.84312 1.04575 1.03975 1.20804 1.00473 0.85303 1.05054 1.66478 1.03902 1.32635 1.10984 1.26909 0.94134 0.96717 1.14670 1.16932 0.81893 0.86639 0.76858 1.90778 1.79960 1.21175 1.50983 1.45700 1.04122 1.11692 1.73549 1.21627 0.86695 0.88477 1.02577 1.19482 0.89822 0.88448 0.92242 0.90881 1.42528 1.43947 1.33759 1.17022 1.20262 1.13980 1.07387 1.03308 0.91500 1.26837 1.04478 1.04284 0.92780 1.70939 1.25293 1.35259 1.30611 0.82653 0.73392 0.73560 0.75431 1.19805 1.21681 1.22795 1.20780 0.99115 0.96744 0.93855 1.20915 0.98771 0.96272 0.97045 1.21343 0.97125 0.97153 0.99794 1.21412 1.00095 1.00739 0.92406 1.21431 0.97914 0.96390 0.98473 1.21282 0.97227 0.97718 0.98140 1.84170 1.05141 1.00429 1.62945 1.26102 0.96903 1.03523 1.07181 1.20591 1.02485 0.86066 1.04813 0.89722 0.87479 0.91177 0.75320 0.89282 0.92475 0.80692 0.94534 0.88909 0.85396 0.83646 0.83358 0.84708 0.88567 0.89574 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.26 10.02 71.24 0.71 -0.54 16 2 C 0.02 0.54 6.68 41.81 0.28 0.82 16 3 N -0.42 -14.31 10.57 -178.24 -1.88 -16.20 16 4 C -0.05 -1.74 7.46 87.26 0.65 -1.09 16 5 C 0.59 22.50 7.81 86.61 0.68 23.17 16 6 O -0.55 -24.25 17.07 -4.09 -0.07 -24.32 16 7 N -0.70 -24.40 5.38 -466.55 -2.51 -26.91 16 8 C 0.13 4.50 5.21 86.38 0.45 4.95 16 9 C 0.21 7.70 2.65 44.25 0.12 7.82 16 10 H 0.07 2.61 7.94 -2.39 -0.02 2.59 16 11 N -0.73 -33.07 3.79 -326.47 -1.24 -34.31 16 12 C -0.32 -16.24 9.92 84.04 0.83 -15.41 16 13 H 0.07 3.39 7.83 -2.91 -0.02 3.36 16 14 C -0.09 -4.95 5.50 84.86 0.47 -4.49 16 15 N -0.97 -57.49 13.70 21.65 0.30 -57.20 16 16 Si 1.12 49.72 29.92 68.60 2.05 51.77 16 17 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 18 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 20 C -0.10 -3.60 4.92 -19.86 -0.10 -3.70 16 21 C -0.11 -4.15 9.33 22.27 0.21 -3.94 16 22 C -0.14 -4.25 10.05 22.27 0.22 -4.03 16 23 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 24 C -0.12 -3.18 10.05 22.27 0.22 -2.96 16 25 C -0.13 -3.71 9.67 22.27 0.22 -3.49 16 26 S 0.22 5.80 22.28 -56.49 -1.26 4.54 16 27 C -0.21 -4.66 6.36 24.77 0.16 -4.50 16 28 C -0.08 -0.98 10.04 71.23 0.71 -0.27 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.11 1.06 6.60 -2.39 -0.02 1.04 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.41 14.16 7.28 -92.71 -0.68 13.49 16 33 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.36 17.62 6.63 -92.71 -0.61 17.01 16 36 H 0.24 14.47 6.77 -92.71 -0.63 13.84 16 37 H 0.09 3.85 7.71 -2.91 -0.02 3.83 16 38 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 41 H 0.14 3.38 8.04 -2.91 -0.02 3.36 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.11 0.80 6.65 -2.39 -0.02 0.79 16 Total: -1.00 -72.17 388.20 1.34 -70.82 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.10 Total: 42.61 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 6.06 Total: -10.80 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -5.34 Total: -134.61 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.07 Total: -24.32 kcal Atomic # 14 Polarization: 49.72 SS G_CDS: 2.05 Total: 51.77 kcal Atomic # 16 Polarization: 5.80 SS G_CDS: -1.26 Total: 4.54 kcal Total: -72.17 1.34 -70.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691799415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.736 kcal (2) G-P(sol) polarization free energy of solvation -72.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds