Wall clock time and date at job start Sat Apr 11 2020 07:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46501 * 119.99909 * 2 1 4 4 C 1.50698 * 109.47026 * 269.99843 * 3 2 1 5 5 H 1.08001 * 120.00043 * 359.97438 * 4 3 2 6 6 C 1.37874 * 120.00031 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00023 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99935 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47316 * 90.00365 * 8 6 4 10 10 H 1.48505 * 109.46798 * 210.00407 * 8 6 4 11 11 H 1.48492 * 109.47235 * 329.99854 * 8 6 4 12 12 C 1.34777 * 120.00196 * 179.97438 * 2 1 3 13 13 O 1.21281 * 120.00138 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99857 * 0.02562 * 12 2 1 15 15 S 1.80996 * 109.46839 * 180.02562 * 14 12 2 16 16 C 1.76206 * 100.00129 * 180.02562 * 15 14 12 17 17 N 1.31269 * 125.79854 * 359.97438 * 16 15 14 18 18 C 1.34360 * 109.30455 * 180.02562 * 17 16 15 19 19 C 1.34386 * 108.34676 * 359.73629 * 18 17 16 20 20 N 1.36104 * 125.80569 * 180.02562 * 16 15 14 21 21 C 1.46497 * 126.50240 * 359.97438 * 20 16 15 22 22 C 1.50707 * 109.47012 * 85.00335 * 21 20 16 23 23 C 1.38238 * 119.99792 * 90.00154 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.98090 * 22 21 20 28 28 H 1.08994 * 109.47333 * 269.99736 * 1 2 3 29 29 H 1.09000 * 109.47308 * 30.00753 * 1 2 3 30 30 H 1.09006 * 109.46523 * 150.00296 * 1 2 3 31 31 H 1.09004 * 109.47014 * 29.99445 * 3 2 1 32 32 H 1.08995 * 109.47298 * 149.99630 * 3 2 1 33 33 H 0.97004 * 119.99802 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46925 * 60.00130 * 14 12 2 35 35 H 1.09002 * 109.47045 * 299.99908 * 14 12 2 36 36 H 1.07999 * 125.82591 * 180.02562 * 18 17 16 37 37 H 1.07999 * 126.52541 * 180.29904 * 19 18 17 38 38 H 1.09005 * 109.47643 * 325.00796 * 21 20 16 39 39 H 1.09000 * 109.47513 * 204.99960 * 21 20 16 40 40 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 41 41 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 44 44 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0982 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4380 3.4168 -3.4340 9 1 2.3078 4.2590 -3.9016 10 1 4.6980 4.2002 -3.4961 11 1 3.5562 2.2195 -4.3044 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1672 0.0010 14 6 1.3855 -2.4723 0.0005 15 16 2.5617 -3.8479 0.0020 16 6 1.4417 -5.2083 0.0010 17 7 0.1317 -5.1243 0.0000 18 6 -0.3927 -6.3613 0.0000 19 6 0.6166 -7.2486 -0.0048 20 7 1.7877 -6.5246 0.0021 21 6 3.1481 -7.0680 0.0038 22 6 3.6591 -7.1386 1.4198 23 6 3.4509 -8.2785 2.1737 24 6 3.9200 -8.3435 3.4724 25 6 4.5978 -7.2689 4.0170 26 6 4.8013 -6.1270 3.2650 27 6 4.3363 -6.0638 1.9648 28 1 -0.3634 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3632 -0.8901 -0.5138 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1385 0.5139 33 1 4.0301 4.4440 -0.8505 34 1 0.7592 -2.5302 -0.8897 35 1 0.7585 -2.5298 0.8903 36 1 -1.4456 -6.6016 -0.0011 37 1 0.5263 -8.3248 -0.0106 38 1 3.7986 -6.4213 -0.5852 39 1 3.1406 -8.0680 -0.4300 40 1 2.9217 -9.1183 1.7480 41 1 3.7570 -9.2339 4.0614 42 1 4.9647 -7.3199 5.0315 43 1 5.3270 -5.2857 3.6920 44 1 4.4996 -5.1735 1.3756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011232125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:57 Heat of formation + Delta-G solvation = 60.062225 kcal Electronic energy + Delta-G solvation = -26584.374278 eV Core-core repulsion = 22822.363246 eV Total energy + Delta-G solvation = -3762.011031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.92092 -39.44922 -38.94917 -34.89843 -34.82400 -32.67593 -31.26682 -31.19948 -30.19548 -29.45107 -27.39098 -26.63478 -25.67277 -22.98352 -22.83919 -22.20708 -21.50293 -21.21575 -18.74461 -17.90006 -17.11030 -16.59473 -16.35586 -16.04459 -15.96285 -15.43059 -15.21199 -15.06510 -14.80240 -14.35570 -14.13133 -13.87557 -13.71181 -13.41668 -13.25777 -13.10229 -12.85151 -12.65573 -12.54380 -12.19063 -11.95568 -11.85589 -11.61229 -11.34224 -11.21882 -10.89864 -10.62405 -10.42688 -10.19435 -10.15721 -9.81377 -9.64852 -9.41235 -9.19179 -9.14161 -9.11775 -8.44325 -7.72554 -7.34099 -6.05266 -4.10105 0.88017 1.12575 1.25573 1.81981 2.19592 2.76567 2.98974 3.26123 3.30771 3.37376 3.42741 3.57109 3.91692 4.23229 4.29667 4.44435 4.66425 4.69870 4.71239 4.87773 4.99017 4.99798 5.16440 5.21800 5.26949 5.29589 5.31642 5.48933 5.53585 5.63970 5.72550 5.75351 5.94068 5.99529 6.13671 6.22526 6.24329 6.27060 6.59740 6.68308 6.78143 6.97885 7.39750 7.47215 7.81357 7.90466 8.20833 8.29320 8.82324 8.98492 9.54918 11.02918 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.014906 B = 0.002545 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.047082 B =10999.365816 C =11881.077995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.593 5.593 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.530 6.530 14 C -0.131 4.131 15 S 0.048 5.952 16 C 0.186 3.814 17 N -0.493 5.493 18 C -0.019 4.019 19 C -0.052 4.052 20 N -0.441 5.441 21 C 0.145 3.855 22 C -0.120 4.120 23 C -0.099 4.099 24 C -0.126 4.126 25 C -0.110 4.110 26 C -0.118 4.118 27 C -0.089 4.089 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.046 0.954 33 H 0.264 0.736 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.128 0.872 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.866 -26.093 6.250 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.305 3.695 13 O -0.408 6.408 14 C -0.283 4.283 15 S 0.277 5.723 16 C -0.184 4.184 17 N -0.216 5.216 18 C -0.168 4.168 19 C -0.187 4.187 20 N -0.126 5.126 21 C 0.024 3.976 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.107 4.107 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.187 0.813 37 H 0.191 0.809 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.146 0.854 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.264 -25.168 6.273 26.037 hybrid contribution -1.079 -0.522 -0.928 1.515 sum -3.343 -25.690 5.345 26.452 Atomic orbital electron populations 1.21728 0.80978 1.02950 1.00809 1.48069 1.06450 1.07306 1.70696 1.19362 0.92619 0.77656 0.97712 1.21420 1.36660 1.06323 0.92201 0.92375 1.24933 0.95290 0.96357 0.97495 1.69933 1.38347 1.14324 1.30755 0.86486 0.77685 0.78618 0.84594 1.20622 1.21062 1.19833 1.19417 0.87717 0.84127 0.78273 1.90703 1.13238 1.86556 1.50277 1.23756 1.01694 0.94477 1.08379 1.85936 1.03264 0.90246 1.92862 1.25699 0.95532 0.88797 1.08390 1.70807 1.04065 1.25037 1.21646 1.22256 0.99276 0.88247 1.07066 1.22738 0.84683 0.98552 1.12679 1.45574 1.06577 1.05125 1.55363 1.20780 0.80596 1.01514 0.94759 1.19901 1.00949 0.95462 0.95757 1.20977 0.99128 0.97247 0.94444 1.21111 0.99031 0.98941 0.95356 1.21262 0.98181 0.93495 0.99872 1.21253 0.99852 0.98233 0.94236 1.21323 0.95902 0.97656 0.95849 0.93370 0.90429 0.92139 0.94678 0.93625 0.92676 0.86453 0.86620 0.81270 0.80897 0.87804 0.87872 0.86228 0.85968 0.85889 0.85378 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.24 59.85 0.61 1.89 16 2 N -0.59 -12.67 2.86 -182.95 -0.52 -13.20 16 3 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 4 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 5 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 8 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.52 10.94 7.69 -10.98 -0.08 10.85 16 13 O -0.53 -13.16 15.44 5.56 0.09 -13.07 16 14 C -0.13 -2.14 4.23 36.01 0.15 -1.99 16 15 S 0.05 0.74 19.59 -107.50 -2.11 -1.37 16 16 C 0.19 2.65 7.96 -88.76 -0.71 1.95 16 17 N -0.49 -7.32 10.60 -13.45 -0.14 -7.46 16 18 C -0.02 -0.22 11.84 -17.81 -0.21 -0.43 16 19 C -0.05 -0.52 11.60 -16.28 -0.19 -0.71 16 20 N -0.44 -5.03 2.79 -118.21 -0.33 -5.36 16 21 C 0.15 1.29 6.05 -5.19 -0.03 1.26 16 22 C -0.12 -1.15 5.46 -104.62 -0.57 -1.72 16 23 C -0.10 -0.82 9.70 -39.58 -0.38 -1.21 16 24 C -0.13 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.11 -0.94 10.05 -39.58 -0.40 -1.34 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 27 C -0.09 -0.96 9.63 -39.58 -0.38 -1.34 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 30 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.12 1.82 7.40 -51.92 -0.38 1.43 16 35 H 0.12 1.73 8.11 -51.91 -0.42 1.31 16 36 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.10 0.93 7.84 -51.93 -0.41 0.52 16 39 H 0.10 0.62 8.08 -51.93 -0.42 0.20 16 40 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.13 1.53 6.79 -52.49 -0.36 1.18 16 LS Contribution 390.82 15.07 5.89 5.89 Total: -1.00 -35.20 390.82 -10.90 -46.09 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.05 Total: 0.41 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.43 Total: -2.99 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.26 Total: -51.85 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.11 Total: -1.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.20 -10.90 -46.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011232125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.156 kcal (2) G-P(sol) polarization free energy of solvation -35.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds