Wall clock time and date at job start Sat Apr 11 2020 07:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 117.00017 * 2 1 4 4 C 1.38797 * 120.02276 * 0.02562 * 3 2 1 5 5 C 1.38179 * 120.08705 * 179.97438 * 4 3 2 6 6 C 1.38169 * 120.12077 * 359.74164 * 5 4 3 7 7 C 1.38885 * 120.03827 * 0.51463 * 6 5 4 8 8 N 1.40051 * 120.04212 * 179.76770 * 7 6 5 9 9 C 1.38766 * 125.99526 * 129.74473 * 8 7 6 10 10 C 1.32905 * 107.88823 * 180.02562 * 9 8 7 11 11 N 1.38641 * 107.92680 * 359.97438 * 10 9 8 12 12 C 1.46501 * 125.97381 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47388 * 260.02808 * 12 11 10 14 14 C 1.36937 * 119.99892 * 89.99596 * 13 12 11 15 15 H 1.08004 * 119.99822 * 218.02188 * 14 13 12 16 16 C 1.38808 * 119.99927 * 38.02723 * 14 13 12 17 17 N 1.31616 * 120.00244 * 20.66042 * 16 14 13 18 18 Si 1.86806 * 119.99725 * 200.66257 * 16 14 13 19 19 H 1.48498 * 109.47163 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46888 * 120.00049 * 18 16 14 21 21 H 1.48504 * 109.46819 * 239.99686 * 18 16 14 22 22 C 1.46495 * 119.99905 * 270.00278 * 13 12 11 23 23 C 1.52999 * 117.50180 * 193.29106 * 22 13 12 24 24 C 1.52993 * 117.50295 * 124.62909 * 22 13 12 25 25 C 1.34751 * 108.05707 * 0.02562 * 11 10 9 26 26 S 1.71196 * 125.94457 * 179.97438 * 25 11 10 27 27 C 1.38589 * 120.01716 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46891 * 300.00016 * 1 2 3 29 29 H 1.08998 * 109.46672 * 60.00430 * 1 2 3 30 30 H 1.08997 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.96038 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.94061 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.97925 * 180.25236 * 6 5 4 34 34 H 1.07997 * 126.05945 * 359.97438 * 9 8 7 35 35 H 1.08003 * 126.03602 * 179.72971 * 10 9 8 36 36 H 1.09002 * 109.46557 * 20.02375 * 12 11 10 37 37 H 1.08995 * 109.46872 * 140.02228 * 12 11 10 38 38 H 0.96996 * 119.99945 * 174.96672 * 17 16 14 39 39 H 1.09000 * 115.54979 * 338.95572 * 22 13 12 40 40 H 1.09002 * 117.49597 * 359.97438 * 23 22 13 41 41 H 1.08996 * 117.50404 * 145.01484 * 23 22 13 42 42 H 1.09004 * 117.50401 * 214.97826 * 24 22 13 43 43 H 1.09001 * 117.49863 * 359.97438 * 24 22 13 44 44 H 1.08002 * 120.06466 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2905 2.3752 0.0005 5 6 1.9164 3.6071 0.0011 6 6 3.2960 3.6839 0.0065 7 6 4.0570 2.5221 0.0006 8 7 5.4553 2.5998 0.0011 9 6 6.3094 1.9239 0.8610 10 6 7.5560 2.2598 0.5456 11 7 7.5025 3.1499 -0.5160 12 6 8.6530 3.7715 -1.1766 13 7 8.8293 5.1348 -0.6699 14 6 9.6241 5.3619 0.4219 15 1 9.3376 6.1030 1.1535 16 6 10.7979 4.6399 0.5881 17 7 11.3621 4.0537 -0.4464 18 14 11.5766 4.5001 2.2804 19 1 10.7532 5.2439 3.2672 20 1 11.6508 3.0702 2.6745 21 1 12.9452 5.0753 2.2445 22 6 8.1553 6.2548 -1.3311 23 6 8.6112 7.6689 -0.9658 24 6 7.2598 7.1481 -0.4704 25 6 6.2074 3.3443 -0.8333 26 16 5.6197 4.3605 -2.0793 27 6 3.4299 1.2838 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2120 2.3184 0.0005 32 1 1.3263 4.5116 0.0019 33 1 3.7828 4.6479 0.0110 34 1 6.0135 1.2458 1.6477 35 1 8.4522 1.9053 1.0330 36 1 9.5500 3.1880 -0.9692 37 1 8.4807 3.8031 -2.2524 38 1 12.2193 3.6113 -0.3452 39 1 7.8468 6.0760 -2.3611 40 1 9.4124 7.7658 -0.2331 41 1 8.6023 8.4204 -1.7552 42 1 6.3622 7.5573 -0.9342 43 1 7.1717 6.9021 0.5878 44 1 4.0194 0.3789 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065188125.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:06 Heat of formation + Delta-G solvation = 118.991393 kcal Electronic energy + Delta-G solvation = -27907.404470 eV Core-core repulsion = 24147.948799 eV Total energy + Delta-G solvation = -3759.455671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17223 -40.17432 -37.84966 -37.03827 -34.78166 -33.30181 -31.37943 -30.91107 -29.88049 -29.11521 -27.56426 -26.07789 -24.30939 -23.13663 -22.50314 -21.28784 -21.25287 -21.18241 -19.94910 -19.07177 -17.37086 -16.64048 -16.44268 -16.20375 -15.96840 -15.65087 -15.27965 -15.18472 -14.93241 -14.50328 -14.27251 -13.87810 -13.78929 -13.69890 -13.33562 -12.91050 -12.75805 -12.49040 -11.99751 -11.87532 -11.45381 -11.34968 -11.17895 -11.07419 -11.00551 -10.81108 -10.62092 -10.54197 -10.31988 -10.17733 -9.71703 -9.40220 -9.21406 -8.87477 -8.73417 -8.35648 -6.93742 -6.74261 -6.63502 -6.23986 -3.76818 0.91377 1.32910 2.09533 2.22463 2.41258 2.91793 3.09968 3.22202 3.26181 3.26746 3.52137 3.61875 4.16663 4.60201 4.77937 4.84552 4.87184 4.90372 5.02364 5.05786 5.15511 5.17819 5.21759 5.30862 5.33581 5.36025 5.54798 5.75098 5.77494 6.07281 6.09847 6.18435 6.23884 6.27801 6.31909 6.44860 6.47173 6.62238 6.76611 6.77973 6.98133 7.09030 7.16868 7.22219 7.43392 7.49601 7.55342 8.17131 8.77736 9.38113 9.96077 10.81490 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016066 B = 0.003356 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.432465 B = 8342.302097 C = 9278.229963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.132 3.868 4 C -0.203 4.203 5 C -0.068 4.068 6 C -0.112 4.112 7 C 0.179 3.821 8 N -0.426 5.426 9 C -0.045 4.045 10 C 0.029 3.971 11 N -0.444 5.444 12 C 0.340 3.660 13 N -0.524 5.524 14 C -0.272 4.272 15 H 0.068 0.932 16 C 0.022 3.978 17 N -0.887 5.887 18 Si 0.904 3.096 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.135 3.865 23 C -0.199 4.199 24 C -0.202 4.202 25 C 0.464 3.536 26 S -0.650 6.650 27 C -0.148 4.148 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.141 0.859 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.264 0.736 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.004 -8.154 4.276 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.086 3.914 4 C -0.222 4.222 5 C -0.087 4.087 6 C -0.132 4.132 7 C 0.088 3.912 8 N -0.114 5.114 9 C -0.172 4.172 10 C -0.103 4.103 11 N -0.137 5.137 12 C 0.134 3.866 13 N -0.237 5.237 14 C -0.401 4.401 15 H 0.086 0.914 16 C -0.180 4.180 17 N -0.528 5.528 18 Si 0.732 3.268 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.211 1.211 22 C 0.028 3.972 23 C -0.238 4.238 24 C -0.242 4.242 25 C 0.107 3.893 26 S -0.517 6.517 27 C -0.169 4.169 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.202 0.798 35 H 0.205 0.795 36 H 0.154 0.846 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.932 -7.717 3.347 18.016 hybrid contribution 0.599 -0.456 1.738 1.894 sum -15.333 -8.173 5.085 18.104 Atomic orbital electron populations 1.23057 0.78271 1.03908 1.01454 1.86055 1.21418 1.26663 1.88922 1.18519 0.91320 0.84349 0.97165 1.21289 1.00104 0.92247 1.08583 1.20796 0.93654 0.97259 0.97024 1.21191 0.93635 0.98344 1.00072 1.16981 0.79331 0.93554 1.01338 1.42611 1.04468 1.36931 1.27381 1.22167 0.88080 1.05729 1.01211 1.22535 0.98434 0.95904 0.93382 1.49005 1.06827 1.32533 1.25381 1.22220 0.84985 0.85733 0.93678 1.43833 1.48638 0.99263 1.32000 1.19105 1.00480 1.21863 0.98663 0.91414 1.25299 0.95617 0.99516 0.97571 1.69812 1.16534 1.38107 1.28303 0.86205 0.79130 0.77910 0.83538 1.19794 1.20907 1.21062 1.21315 0.96677 0.84185 0.95053 1.23179 0.98288 0.98524 1.03813 1.23103 0.93176 1.07749 1.00160 1.23114 0.83668 0.90733 0.91803 1.92885 1.80960 1.46987 1.30901 1.20066 0.92007 0.96964 1.07834 0.92601 0.92514 0.88269 0.85181 0.84874 0.84119 0.79758 0.79456 0.84586 0.90111 0.92534 0.87568 0.88615 0.90618 0.90431 0.90652 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.42 10.49 -19.42 -0.20 -3.62 16 3 C 0.13 1.59 6.68 -39.24 -0.26 1.33 16 4 C -0.20 -2.16 9.04 -39.40 -0.36 -2.52 16 5 C -0.07 -0.81 10.03 -39.63 -0.40 -1.21 16 6 C -0.11 -1.68 8.78 -39.37 -0.35 -2.02 16 7 C 0.18 2.76 5.78 -83.66 -0.48 2.28 16 8 N -0.43 -7.19 2.88 -61.83 -0.18 -7.37 16 9 C -0.05 -0.64 11.19 -16.25 -0.18 -0.82 16 10 C 0.03 0.47 11.48 -16.31 -0.19 0.28 16 11 N -0.44 -8.74 3.01 -121.47 -0.37 -9.10 16 12 C 0.34 7.47 5.97 -63.75 -0.38 7.09 16 13 N -0.52 -12.33 3.02 -169.35 -0.51 -12.85 16 14 C -0.27 -6.74 8.06 -15.06 -0.12 -6.86 16 15 H 0.07 1.75 7.25 -52.48 -0.38 1.37 16 16 C 0.02 0.52 4.97 -17.43 -0.09 0.44 16 17 N -0.89 -22.41 11.45 55.49 0.64 -21.78 16 18 Si 0.90 19.29 29.60 -169.99 -5.03 14.26 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 C 0.14 3.04 5.42 -67.94 -0.37 2.67 16 23 C -0.20 -4.16 9.81 -26.70 -0.26 -4.43 16 24 C -0.20 -4.25 10.11 -26.70 -0.27 -4.52 16 25 C 0.46 9.32 7.63 -86.95 -0.66 8.66 16 26 S -0.65 -14.54 26.88 -107.50 -2.89 -17.43 16 27 C -0.15 -1.99 9.62 -39.25 -0.38 -2.36 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.13 1.00 6.29 -52.49 -0.33 0.67 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 2.39 7.48 -52.49 -0.39 2.00 16 34 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.19 2.62 8.06 -52.48 -0.42 2.20 16 36 H 0.14 3.14 5.50 -51.93 -0.29 2.86 16 37 H 0.08 1.83 7.86 -51.93 -0.41 1.43 16 38 H 0.26 6.42 8.32 -40.82 -0.34 6.08 16 39 H 0.11 2.47 7.55 -51.93 -0.39 2.08 16 40 H 0.10 2.13 6.93 -51.93 -0.36 1.77 16 41 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.07 1.68 8.06 -51.93 -0.42 1.26 16 44 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -30.15 380.26 -12.43 -42.58 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -5.86 Total: 10.41 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -3.75 Total: -0.83 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: -0.42 Total: -51.10 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.20 Total: -3.62 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Atomic # 16 Polarization: -14.54 SS G_CDS: -2.89 Total: -17.43 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.15 -12.43 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065188125.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.570 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds