Wall clock time and date at job start Sat Apr 11 2020 07:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47150 * 2 1 4 4 C 1.46493 * 119.99969 * 274.94963 * 3 2 1 5 5 C 1.50698 * 109.47646 * 270.00048 * 4 3 2 6 6 C 1.39868 * 126.04171 * 269.69641 * 5 4 3 7 7 N 1.30844 * 108.20238 * 179.81338 * 6 5 4 8 8 N 1.40084 * 108.20140 * 0.43497 * 7 6 5 9 9 C 1.46500 * 126.02996 * 179.69585 * 8 7 6 10 10 C 1.34942 * 107.92923 * 359.72285 * 8 7 6 11 11 C 1.34782 * 119.99881 * 94.95205 * 3 2 1 12 12 O 1.21607 * 119.99507 * 185.80971 * 11 3 2 13 13 C 1.47427 * 119.99875 * 5.81099 * 11 3 2 14 14 C 1.39683 * 120.21651 * 55.11320 * 13 11 3 15 15 C 1.37803 * 119.93896 * 180.02562 * 14 13 11 16 16 C 1.38655 * 120.37984 * 359.96991 * 15 14 13 17 17 C 1.37910 * 120.44415 * 0.02562 * 16 15 14 18 18 C 1.39121 * 120.04599 * 0.02562 * 17 16 15 19 19 S 1.76201 * 120.18829 * 179.97438 * 18 17 16 20 20 C 1.76197 * 100.00010 * 354.36306 * 19 18 17 21 21 H 1.07997 * 120.00381 * 5.03041 * 20 19 18 22 22 C 1.38812 * 119.99657 * 185.03739 * 20 19 18 23 23 N 1.31544 * 120.00022 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99540 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47250 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46793 * 119.99850 * 24 22 20 27 27 H 1.48494 * 109.46922 * 239.99525 * 24 22 20 28 28 H 1.09003 * 109.47385 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47384 * 299.99923 * 1 2 3 30 30 H 1.09003 * 109.47034 * 60.00450 * 1 2 3 31 31 H 1.08996 * 109.47255 * 239.99536 * 2 1 3 32 32 H 1.09002 * 109.46711 * 120.00260 * 2 1 3 33 33 H 1.09006 * 109.47364 * 30.00059 * 4 3 2 34 34 H 1.09004 * 109.47359 * 150.00360 * 4 3 2 35 35 H 1.07998 * 125.89968 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.47611 * 270.02415 * 9 8 7 37 37 H 1.08997 * 109.47440 * 30.02795 * 9 8 7 38 38 H 1.09001 * 109.46884 * 150.02707 * 9 8 7 39 39 H 1.08001 * 126.12778 * 179.97438 * 10 8 7 40 40 H 1.07994 * 120.02708 * 359.97438 * 14 13 11 41 41 H 1.07996 * 119.81098 * 179.97438 * 15 14 13 42 42 H 1.07999 * 119.77999 * 179.74677 * 16 15 14 43 43 H 1.08000 * 119.98033 * 180.02562 * 17 16 15 44 44 H 0.97000 * 119.99809 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1083 -1.2639 5 6 3.5421 1.8858 -1.8200 6 6 4.6684 2.6749 -1.5651 7 7 5.6807 2.1660 -2.2195 8 7 5.2275 1.0411 -2.9206 9 6 6.0382 0.1804 -3.7856 10 6 3.9123 0.8905 -2.6589 11 6 2.3379 1.9830 1.1629 12 8 2.6418 3.1604 1.1747 13 6 2.3191 1.2137 2.4204 14 6 3.0662 0.0392 2.5373 15 6 3.0440 -0.6756 3.7152 16 6 2.2839 -0.2357 4.7882 17 6 1.5406 0.9217 4.6901 18 6 1.5489 1.6569 3.5091 19 16 0.5999 3.1359 3.3794 20 6 -0.2506 3.0900 4.9218 21 1 -0.0201 2.3197 5.6429 22 6 -1.2171 4.0437 5.2101 23 7 -1.4976 4.9821 4.3319 24 14 -2.1193 3.9945 6.8451 25 1 -1.6236 2.8492 7.6497 26 1 -1.8763 5.2603 7.5827 27 1 -3.5755 3.8349 6.6022 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.4184 1.7454 -1.9765 34 1 2.0048 3.1731 -1.0898 35 1 4.6981 3.5513 -0.9347 36 1 6.0107 0.5619 -4.8063 37 1 7.0679 0.1727 -3.4282 38 1 5.6392 -0.8337 -3.7659 39 1 3.2700 0.1150 -3.0492 40 1 3.6598 -0.3087 1.7049 41 1 3.6220 -1.5836 3.8031 42 1 2.2704 -0.8057 5.7054 43 1 0.9515 1.2577 5.5307 44 1 -2.1727 5.6488 4.5335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065908879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:09 Heat of formation + Delta-G solvation = 80.491929 kcal Electronic energy + Delta-G solvation = -27597.250958 eV Core-core repulsion = 23836.125825 eV Total energy + Delta-G solvation = -3761.125133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.25194 -39.66819 -37.55022 -35.66353 -33.51214 -32.76974 -31.64985 -30.52821 -30.33153 -29.68799 -27.53095 -25.87191 -25.28773 -23.52407 -22.36066 -21.95887 -21.05948 -20.48654 -19.17232 -17.82227 -16.91010 -16.79498 -16.21025 -16.03419 -15.42804 -15.14459 -15.02982 -14.51399 -14.38711 -13.96240 -13.65928 -13.48528 -13.36941 -13.05149 -12.95061 -12.89676 -12.79234 -12.49482 -12.42187 -12.11706 -11.77991 -11.64080 -11.49464 -11.22718 -11.16414 -10.98597 -10.86893 -10.58518 -10.32038 -9.78554 -9.57007 -9.45450 -9.41291 -8.73556 -8.62960 -8.40559 -8.36215 -8.17312 -6.55469 -6.48935 -4.19586 1.68013 1.81710 1.99824 2.44193 2.70306 3.08775 3.10944 3.19759 3.29422 3.38404 3.62898 4.02535 4.35552 4.38892 4.68110 4.87452 4.93434 4.96110 5.08201 5.10384 5.14541 5.15223 5.27281 5.39959 5.42147 5.56689 5.59086 5.61509 5.79833 5.85415 5.90006 5.96449 6.05994 6.14580 6.18415 6.37791 6.46481 6.58665 6.64913 6.86093 6.89631 6.93252 7.03842 7.13620 7.44037 7.58565 7.66462 7.80283 8.15350 8.73657 8.98252 10.56911 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003107 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.318342 B = 9008.408903 C = 9660.455298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.607 5.607 4 C 0.192 3.808 5 C -0.247 4.247 6 C 0.072 3.928 7 N -0.303 5.303 8 N -0.382 5.382 9 C 0.104 3.896 10 C 0.061 3.939 11 C 0.575 3.425 12 O -0.517 6.517 13 C -0.155 4.155 14 C -0.070 4.070 15 C -0.178 4.178 16 C -0.083 4.083 17 C -0.151 4.151 18 C -0.049 4.049 19 S 0.100 5.900 20 C -0.567 4.567 21 H 0.094 0.906 22 C 0.080 3.920 23 N -0.859 5.859 24 Si 0.923 3.077 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.277 1.277 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.185 0.815 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.170 0.830 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.765 -13.785 -13.707 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.341 5.341 4 C 0.069 3.931 5 C -0.260 4.260 6 C -0.114 4.114 7 N -0.124 5.124 8 N -0.164 5.164 9 C -0.038 4.038 10 C -0.086 4.086 11 C 0.363 3.637 12 O -0.392 6.392 13 C -0.169 4.169 14 C -0.090 4.090 15 C -0.202 4.202 16 C -0.104 4.104 17 C -0.176 4.176 18 C -0.167 4.167 19 S 0.361 5.639 20 C -0.714 4.714 21 H 0.112 0.888 22 C -0.131 4.131 23 N -0.492 5.492 24 Si 0.748 3.252 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.112 0.888 35 H 0.202 0.798 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.188 0.812 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.857 -11.817 -14.990 21.043 hybrid contribution -1.305 -1.251 2.113 2.781 sum 7.552 -13.069 -12.877 19.841 Atomic orbital electron populations 1.22184 0.95880 1.01790 1.03055 1.21671 0.94572 0.82892 1.03030 1.47925 1.66154 1.14307 1.05726 1.19536 0.90629 0.98785 0.84188 1.20553 0.98583 1.00032 1.06797 1.23959 0.89883 0.99913 0.97683 1.77397 1.23257 0.99281 1.12488 1.48479 1.07198 1.23008 1.37753 1.21792 0.96439 0.92523 0.93012 1.22298 0.85984 1.00437 0.99842 1.18272 0.75786 0.86489 0.83109 1.90770 1.46873 1.15301 1.86289 1.19172 1.05616 0.98172 0.93950 1.20797 0.97635 0.93130 0.97398 1.20648 1.04008 1.01368 0.94203 1.21054 0.95716 0.95838 0.97767 1.21431 1.01985 0.96063 0.98165 1.22857 0.98661 1.00868 0.94296 1.84034 1.40295 1.15779 1.23796 1.23595 1.25473 1.18422 1.03914 0.88805 1.25104 0.95556 0.94074 0.98320 1.69979 1.30772 1.13941 1.34532 0.86037 0.79098 0.78635 0.81419 1.19136 1.20221 1.20248 0.92049 0.91447 0.92682 0.91610 0.89146 0.90326 0.88762 0.79765 0.90984 0.89472 0.89709 0.81237 0.86965 0.87069 0.87017 0.84357 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 10.24 37.16 0.38 -1.70 16 2 C 0.10 1.23 5.95 -4.04 -0.02 1.20 16 3 N -0.61 -9.14 2.46 -176.33 -0.43 -9.58 16 4 C 0.19 2.52 5.95 -5.20 -0.03 2.49 16 5 C -0.25 -3.13 5.68 -105.05 -0.60 -3.73 16 6 C 0.07 1.05 11.96 -17.36 -0.21 0.84 16 7 N -0.30 -4.34 12.58 30.63 0.39 -3.96 16 8 N -0.38 -4.18 4.01 -68.16 -0.27 -4.45 16 9 C 0.10 0.64 11.47 59.85 0.69 1.33 16 10 C 0.06 0.62 11.40 -17.22 -0.20 0.43 16 11 C 0.57 11.21 6.47 -12.52 -0.08 11.12 16 12 O -0.52 -11.81 15.66 5.27 0.08 -11.73 16 13 C -0.16 -3.07 4.91 -104.75 -0.51 -3.58 16 14 C -0.07 -1.14 7.48 -39.20 -0.29 -1.44 16 15 C -0.18 -2.76 10.02 -39.59 -0.40 -3.16 16 16 C -0.08 -1.40 10.02 -39.55 -0.40 -1.80 16 17 C -0.15 -3.12 9.26 -39.37 -0.36 -3.48 16 18 C -0.05 -1.09 6.15 -38.39 -0.24 -1.33 16 19 S 0.10 2.65 19.96 -107.50 -2.15 0.50 16 20 C -0.57 -15.41 9.08 30.94 0.28 -15.13 16 21 H 0.09 2.42 4.82 -52.49 -0.25 2.17 16 22 C 0.08 2.17 5.49 -17.46 -0.10 2.08 16 23 N -0.86 -24.48 13.22 55.49 0.73 -23.75 16 24 Si 0.92 20.49 29.55 -169.99 -5.02 15.46 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 32 H 0.09 1.16 4.44 -51.93 -0.23 0.93 16 33 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.09 1.43 7.35 -51.93 -0.38 1.05 16 35 H 0.19 2.71 8.06 -52.49 -0.42 2.29 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.11 1.60 7.59 -52.49 -0.40 1.20 16 41 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 43 H 0.14 2.98 4.93 -52.49 -0.26 2.72 16 44 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 385.01 15.07 5.80 5.80 Total: -1.00 -34.00 385.01 -8.68 -42.68 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.73 Total: 4.87 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -2.09 Total: -15.86 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.41 Total: -41.73 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.15 Total: 0.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.00 -8.68 -42.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065908879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.174 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds