Wall clock time and date at job start Sat Apr 11 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47150 * 2 1 4 4 C 1.46493 * 119.99969 * 274.94963 * 3 2 1 5 5 C 1.50698 * 109.47646 * 270.00048 * 4 3 2 6 6 C 1.39868 * 126.04171 * 269.69641 * 5 4 3 7 7 N 1.30844 * 108.20238 * 179.81338 * 6 5 4 8 8 N 1.40084 * 108.20140 * 0.43497 * 7 6 5 9 9 C 1.46500 * 126.02996 * 179.69585 * 8 7 6 10 10 C 1.34942 * 107.92923 * 359.72285 * 8 7 6 11 11 C 1.34782 * 119.99881 * 94.95205 * 3 2 1 12 12 O 1.21607 * 119.99507 * 185.80971 * 11 3 2 13 13 C 1.47427 * 119.99875 * 5.81099 * 11 3 2 14 14 C 1.39683 * 120.21651 * 55.11320 * 13 11 3 15 15 C 1.37803 * 119.93896 * 180.02562 * 14 13 11 16 16 C 1.38655 * 120.37984 * 359.96991 * 15 14 13 17 17 C 1.37910 * 120.44415 * 0.02562 * 16 15 14 18 18 C 1.39121 * 120.04599 * 0.02562 * 17 16 15 19 19 S 1.76201 * 120.18829 * 179.97438 * 18 17 16 20 20 C 1.76197 * 100.00010 * 354.36306 * 19 18 17 21 21 H 1.07997 * 120.00381 * 5.03041 * 20 19 18 22 22 C 1.38812 * 119.99657 * 185.03739 * 20 19 18 23 23 N 1.31544 * 120.00022 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99540 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47250 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.46793 * 119.99850 * 24 22 20 27 27 H 1.48494 * 109.46922 * 239.99525 * 24 22 20 28 28 H 1.09003 * 109.47385 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47384 * 299.99923 * 1 2 3 30 30 H 1.09003 * 109.47034 * 60.00450 * 1 2 3 31 31 H 1.08996 * 109.47255 * 239.99536 * 2 1 3 32 32 H 1.09002 * 109.46711 * 120.00260 * 2 1 3 33 33 H 1.09006 * 109.47364 * 30.00059 * 4 3 2 34 34 H 1.09004 * 109.47359 * 150.00360 * 4 3 2 35 35 H 1.07998 * 125.89968 * 359.97438 * 6 5 4 36 36 H 1.09004 * 109.47611 * 270.02415 * 9 8 7 37 37 H 1.08997 * 109.47440 * 30.02795 * 9 8 7 38 38 H 1.09001 * 109.46884 * 150.02707 * 9 8 7 39 39 H 1.08001 * 126.12778 * 179.97438 * 10 8 7 40 40 H 1.07994 * 120.02708 * 359.97438 * 14 13 11 41 41 H 1.07996 * 119.81098 * 179.97438 * 15 14 13 42 42 H 1.07999 * 119.77999 * 179.74677 * 16 15 14 43 43 H 1.08000 * 119.98033 * 180.02562 * 17 16 15 44 44 H 0.97000 * 119.99809 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1592 2.1083 -1.2639 5 6 3.5421 1.8858 -1.8200 6 6 4.6684 2.6749 -1.5651 7 7 5.6807 2.1660 -2.2195 8 7 5.2275 1.0411 -2.9206 9 6 6.0382 0.1804 -3.7856 10 6 3.9123 0.8905 -2.6589 11 6 2.3379 1.9830 1.1629 12 8 2.6418 3.1604 1.1747 13 6 2.3191 1.2137 2.4204 14 6 3.0662 0.0392 2.5373 15 6 3.0440 -0.6756 3.7152 16 6 2.2839 -0.2357 4.7882 17 6 1.5406 0.9217 4.6901 18 6 1.5489 1.6569 3.5091 19 16 0.5999 3.1359 3.3794 20 6 -0.2506 3.0900 4.9218 21 1 -0.0201 2.3197 5.6429 22 6 -1.2171 4.0437 5.2101 23 7 -1.4976 4.9821 4.3319 24 14 -2.1193 3.9945 6.8451 25 1 -1.6236 2.8492 7.6497 26 1 -1.8763 5.2603 7.5827 27 1 -3.5755 3.8349 6.6022 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.4184 1.7454 -1.9765 34 1 2.0048 3.1731 -1.0898 35 1 4.6981 3.5513 -0.9347 36 1 6.0107 0.5619 -4.8063 37 1 7.0679 0.1727 -3.4282 38 1 5.6392 -0.8337 -3.7659 39 1 3.2700 0.1150 -3.0492 40 1 3.6598 -0.3087 1.7049 41 1 3.6220 -1.5836 3.8031 42 1 2.2704 -0.8057 5.7054 43 1 0.9515 1.2577 5.5307 44 1 -2.1727 5.6488 4.5335 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065908879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:08 Heat of formation + Delta-G solvation = 59.326532 kcal Electronic energy + Delta-G solvation = -27598.168759 eV Core-core repulsion = 23836.125825 eV Total energy + Delta-G solvation = -3762.042934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.18227 -41.05328 -39.00381 -36.98052 -34.78645 -34.32535 -32.74927 -31.92591 -31.76548 -30.72301 -28.36475 -27.88466 -26.30695 -24.74887 -23.67546 -23.37281 -21.92806 -21.56462 -20.57579 -19.52582 -18.23128 -17.75395 -17.65128 -17.32090 -17.03268 -16.45350 -16.20190 -15.87948 -15.43337 -15.20739 -15.10934 -14.67800 -14.58145 -14.48307 -14.14885 -14.04615 -13.70493 -13.55244 -13.42436 -13.27340 -13.18711 -13.00436 -12.88489 -12.82101 -12.60531 -12.47733 -12.04577 -11.93886 -11.54290 -11.46886 -11.38901 -10.97781 -10.40618 -10.36353 -10.33837 -9.80547 -9.53544 -9.34352 -8.50018 -8.46942 -6.26569 0.21722 0.51685 0.95469 1.26572 1.36331 1.46252 1.59837 1.64374 1.72230 1.85698 2.18295 2.45527 2.83631 2.97106 3.19011 3.62339 3.75517 3.99886 4.05387 4.19384 4.24844 4.27076 4.34819 4.40938 4.49110 4.59983 4.60512 4.64790 4.68779 4.74283 4.80796 4.85958 4.96005 4.96826 5.05144 5.10073 5.17981 5.37753 5.44858 5.49012 5.56353 5.62074 5.67498 5.78809 6.09106 6.16452 6.20416 6.49976 6.72999 6.94069 7.32537 8.60081 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.016310 B = 0.003107 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.318342 B = 9008.408903 C = 9660.455298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.097 3.903 3 N -0.596 5.596 4 C 0.194 3.806 5 C -0.268 4.268 6 C 0.047 3.953 7 N -0.338 5.338 8 N -0.377 5.377 9 C 0.093 3.907 10 C 0.089 3.911 11 C 0.564 3.436 12 O -0.568 6.568 13 C -0.157 4.157 14 C -0.066 4.066 15 C -0.147 4.147 16 C -0.077 4.077 17 C -0.169 4.169 18 C -0.067 4.067 19 S -0.007 6.007 20 C -0.573 4.573 21 H 0.099 0.901 22 C 0.022 3.978 23 N -0.905 5.905 24 Si 0.998 3.002 25 H -0.255 1.255 26 H -0.272 1.272 27 H -0.268 1.268 28 H 0.089 0.911 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.160 0.840 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.221 0.779 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.150 0.850 43 H 0.120 0.880 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -19.429 -14.841 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.328 5.328 4 C 0.071 3.929 5 C -0.280 4.280 6 C -0.138 4.138 7 N -0.160 5.160 8 N -0.159 5.159 9 C -0.047 4.047 10 C -0.059 4.059 11 C 0.353 3.647 12 O -0.447 6.447 13 C -0.170 4.170 14 C -0.085 4.085 15 C -0.170 4.170 16 C -0.098 4.098 17 C -0.194 4.194 18 C -0.184 4.184 19 S 0.249 5.751 20 C -0.720 4.720 21 H 0.117 0.883 22 C -0.184 4.184 23 N -0.540 5.540 24 Si 0.819 3.181 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.193 1.193 28 H 0.108 0.892 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.177 0.823 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.238 0.762 40 H 0.164 0.836 41 H 0.181 0.819 42 H 0.168 0.832 43 H 0.138 0.862 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.060 -17.572 -16.162 25.907 hybrid contribution -1.419 0.194 2.275 2.688 sum 8.641 -17.378 -13.887 23.864 Atomic orbital electron populations 1.22153 0.96146 1.03004 1.01200 1.21961 0.94274 0.81096 1.05091 1.48012 1.64307 1.15510 1.04986 1.19584 0.92430 0.96951 0.83899 1.20440 0.97472 1.01386 1.08736 1.23804 0.91386 1.00216 0.98438 1.77318 1.23749 1.01232 1.13710 1.48884 1.08082 1.22003 1.36927 1.22228 0.96113 0.93542 0.92783 1.22897 0.85863 0.99780 0.97397 1.18469 0.75804 0.86015 0.84451 1.90746 1.49516 1.17371 1.87095 1.19494 1.04933 0.99127 0.93432 1.21204 0.96616 0.91543 0.99168 1.21274 1.01555 1.01812 0.92331 1.21468 0.94183 0.94197 0.99916 1.21459 1.03164 0.97711 0.97036 1.22691 0.99697 0.99621 0.96347 1.84170 1.44060 1.21277 1.25635 1.23833 1.25666 1.18739 1.03777 0.88314 1.26174 0.96396 0.93506 1.02278 1.70132 1.31901 1.15096 1.36881 0.84921 0.77804 0.78941 0.76471 1.17895 1.19773 1.19343 0.89226 0.96190 0.91714 0.86759 0.89582 0.86624 0.92389 0.82267 0.89446 0.89720 0.86001 0.76231 0.83632 0.81865 0.83226 0.86201 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.10 2.04 5.95 86.38 0.51 2.55 16 3 N -0.60 -17.65 2.46 -830.05 -2.04 -19.69 16 4 C 0.19 5.06 5.95 85.63 0.51 5.57 16 5 C -0.27 -6.49 5.68 -20.14 -0.11 -6.60 16 6 C 0.05 1.42 11.96 85.23 1.02 2.44 16 7 N -0.34 -9.59 12.58 -57.02 -0.72 -10.30 16 8 N -0.38 -7.07 4.01 -369.56 -1.48 -8.56 16 9 C 0.09 0.76 11.47 127.77 1.47 2.23 16 10 C 0.09 1.43 11.40 83.54 0.95 2.39 16 11 C 0.56 22.95 6.47 86.66 0.56 23.51 16 12 O -0.57 -28.39 15.66 -4.05 -0.06 -28.45 16 13 C -0.16 -6.28 4.91 -19.95 -0.10 -6.38 16 14 C -0.07 -1.93 7.48 22.52 0.17 -1.77 16 15 C -0.15 -3.79 10.02 22.27 0.22 -3.56 16 16 C -0.08 -2.36 10.02 22.29 0.22 -2.14 16 17 C -0.17 -7.03 9.26 22.40 0.21 -6.83 16 18 C -0.07 -3.15 6.15 23.04 0.14 -3.01 16 19 S -0.01 -0.41 19.96 -56.49 -1.13 -1.53 16 20 C -0.57 -33.25 9.08 67.96 0.62 -32.63 16 21 H 0.10 5.39 4.82 -2.91 -0.01 5.38 16 22 C 0.02 1.26 5.49 84.87 0.47 1.72 16 23 N -0.91 -55.10 13.22 21.65 0.29 -54.81 16 24 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 28 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 1.36 8.11 -2.39 -0.02 1.34 16 32 H 0.09 1.89 4.44 -2.39 -0.01 1.88 16 33 H 0.12 2.10 8.07 -2.38 -0.02 2.08 16 34 H 0.06 1.93 7.35 -2.38 -0.02 1.91 16 35 H 0.16 5.39 8.06 -2.91 -0.02 5.37 16 36 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.15 3.40 7.59 -2.91 -0.02 3.37 16 41 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 42 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 43 H 0.12 5.38 4.93 -2.91 -0.01 5.36 16 44 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -86.49 385.01 5.50 -80.99 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 1.02 Total: 22.23 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: 7.59 Total: -25.54 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -3.95 Total: -93.36 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.06 Total: -28.45 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -0.41 SS G_CDS: -1.13 Total: -1.53 kcal Total: -86.49 5.50 -80.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065908879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.317 kcal (2) G-P(sol) polarization free energy of solvation -86.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds