Wall clock time and date at job start Sat Apr 11 2020 07:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46844 * 2 1 4 4 C 1.36818 * 120.00148 * 264.24830 * 3 2 1 5 5 H 1.07998 * 119.99867 * 195.18775 * 4 3 2 6 6 C 1.39077 * 119.99839 * 15.18704 * 4 3 2 7 7 N 1.31347 * 120.00149 * 13.92036 * 6 4 3 8 8 Si 1.86796 * 119.99817 * 193.91482 * 6 4 3 9 9 H 1.48499 * 109.47298 * 90.00523 * 8 6 4 10 10 H 1.48505 * 109.47206 * 210.00195 * 8 6 4 11 11 H 1.48502 * 109.47330 * 330.00098 * 8 6 4 12 12 C 1.34774 * 119.99944 * 84.24861 * 3 2 1 13 13 O 1.21628 * 120.00026 * 174.93029 * 12 3 2 14 14 C 1.47505 * 119.99844 * 354.92452 * 12 3 2 15 15 N 1.31733 * 120.63314 * 354.31729 * 14 12 3 16 16 N 1.28188 * 122.08247 * 179.97438 * 15 14 12 17 17 C 1.39891 * 118.34406 * 179.97438 * 16 15 14 18 18 C 1.38895 * 120.08887 * 109.24274 * 17 16 15 19 19 C 1.38090 * 119.95508 * 180.02562 * 18 17 16 20 20 C 1.38331 * 120.12124 * 359.97438 * 19 18 17 21 21 C 1.38238 * 120.17416 * 0.04894 * 20 19 18 22 22 C 1.38339 * 120.05137 * 359.94631 * 21 20 19 23 23 F 1.35096 * 120.06595 * 180.02562 * 22 21 20 24 24 C 1.35546 * 123.30773 * 0.27389 * 16 15 14 25 25 C 1.50693 * 119.57353 * 179.70172 * 24 16 15 26 26 C 1.35442 * 120.84779 * 359.44223 * 24 16 15 27 27 C 1.41878 * 117.83886 * 0.52668 * 26 24 16 28 28 O 1.22114 * 121.41154 * 179.76216 * 27 26 24 29 29 H 1.08998 * 109.47493 * 59.99547 * 1 2 3 30 30 H 1.09006 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47298 * 299.99663 * 1 2 3 32 32 H 1.09000 * 109.46994 * 240.00590 * 2 1 3 33 33 H 1.08994 * 109.47141 * 120.00111 * 2 1 3 34 34 H 0.97001 * 119.99866 * 179.97438 * 7 6 4 35 35 H 1.08002 * 120.02809 * 359.74886 * 18 17 16 36 36 H 1.07993 * 119.94363 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.91190 * 180.02562 * 20 19 18 38 38 H 1.08006 * 119.97619 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.47203 * 92.26228 * 25 24 16 40 40 H 1.09002 * 109.46979 * 212.26404 * 25 24 16 41 41 H 1.09003 * 109.47435 * 332.26078 * 25 24 16 42 42 H 1.07995 * 121.08119 * 180.26573 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3582 1.9867 -1.1789 5 1 2.9402 2.8965 -1.1705 6 6 1.9544 1.4305 -2.3880 7 7 1.0315 0.4962 -2.4054 8 14 2.7246 2.0125 -3.9872 9 1 3.9200 1.1854 -4.2907 10 1 1.7379 1.8795 -5.0890 11 1 3.1282 3.4353 -3.8533 12 6 2.1326 2.0556 1.1613 13 8 2.6239 3.1682 1.1727 14 6 1.6617 1.4444 2.4185 15 7 1.0276 0.2897 2.4071 16 7 0.6070 -0.2666 3.4827 17 6 -0.0577 -1.4932 3.3798 18 6 0.5549 -2.6568 3.8270 19 6 -0.1035 -3.8662 3.7236 20 6 -1.3725 -3.9212 3.1759 21 6 -1.9869 -2.7664 2.7288 22 6 -1.3339 -1.5509 2.8289 23 9 -1.9343 -0.4221 2.3925 24 6 0.7686 0.2766 4.7140 25 6 0.2340 -0.4478 5.9224 26 6 1.4089 1.4595 4.8726 27 6 1.8921 2.1125 3.7095 28 8 2.4748 3.1836 3.7766 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.7496 0.1086 -3.2487 35 1 1.5473 -2.6164 4.2512 36 1 0.3728 -4.7707 4.0718 37 1 -1.8845 -4.8688 3.0971 38 1 -2.9777 -2.8130 2.3013 39 1 1.0138 -1.0860 6.3379 40 1 -0.0790 0.2786 6.6725 41 1 -0.6196 -1.0599 5.6311 42 1 1.5434 1.8936 5.8523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068241283.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:11 Heat of formation + Delta-G solvation = 6.931169 kcal Electronic energy + Delta-G solvation = -31610.654331 eV Core-core repulsion = 27280.126188 eV Total energy + Delta-G solvation = -4330.528143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.08370 -43.24385 -40.67904 -39.78250 -39.05904 -37.03053 -35.75500 -34.37942 -33.66779 -31.74416 -31.34283 -30.52547 -29.39786 -27.48647 -26.09783 -24.57814 -24.13000 -23.74035 -23.09385 -21.89697 -19.88527 -19.53499 -18.80780 -18.42524 -17.98153 -17.60531 -17.13782 -16.78829 -16.73075 -16.62599 -15.90814 -15.85232 -15.53915 -15.31696 -15.13593 -14.90826 -14.74687 -14.60442 -14.22084 -14.16025 -14.02280 -13.83935 -13.64627 -13.16808 -13.11397 -12.91337 -12.88374 -12.72691 -12.39381 -12.27521 -12.12980 -12.05368 -11.72772 -11.09296 -10.91512 -10.83340 -10.32312 -10.10271 -9.85812 -9.74676 -9.31592 -8.35006 -5.96779 -0.44391 -0.29164 0.06980 0.11939 1.00270 1.37460 1.40402 1.53047 1.86042 2.20511 2.42222 2.54612 2.66895 3.05400 3.07963 3.29517 3.31327 3.39188 3.70035 3.91980 3.96462 4.04121 4.24098 4.26388 4.31875 4.54165 4.60071 4.64109 4.78756 4.85887 4.91912 4.94335 4.97481 4.99543 5.02885 5.13781 5.21472 5.33205 5.35088 5.42542 5.50410 5.83166 5.90633 5.99398 6.44776 6.65890 6.79994 7.07343 7.30807 7.93896 8.56340 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.004826 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.083782 B = 5800.380420 C = 7581.699917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.139 3.861 3 N -0.419 5.419 4 C -0.345 4.345 5 H 0.074 0.926 6 C 0.005 3.995 7 N -0.861 5.861 8 Si 0.999 3.001 9 H -0.263 1.263 10 H -0.264 1.264 11 H -0.281 1.281 12 C 0.470 3.530 13 O -0.620 6.620 14 C -0.053 4.053 15 N -0.161 5.161 16 N -0.273 5.273 17 C 0.049 3.951 18 C -0.071 4.071 19 C -0.102 4.102 20 C -0.055 4.055 21 C -0.146 4.146 22 C 0.097 3.903 23 F -0.150 7.150 24 C 0.157 3.843 25 C -0.116 4.116 26 C -0.289 4.289 27 C 0.363 3.637 28 O -0.529 6.529 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.279 0.721 35 H 0.154 0.846 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.159 0.841 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.091 0.909 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 -22.502 15.781 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.017 3.983 3 N -0.136 5.136 4 C -0.473 4.473 5 H 0.092 0.908 6 C -0.199 4.199 7 N -0.498 5.498 8 Si 0.821 3.179 9 H -0.187 1.187 10 H -0.188 1.188 11 H -0.206 1.206 12 C 0.259 3.741 13 O -0.506 6.506 14 C -0.226 4.226 15 N 0.010 4.990 16 N -0.066 5.066 17 C -0.040 4.040 18 C -0.091 4.091 19 C -0.120 4.120 20 C -0.073 4.073 21 C -0.165 4.165 22 C 0.076 3.924 23 F -0.129 7.129 24 C 0.046 3.954 25 C -0.174 4.174 26 C -0.314 4.314 27 C 0.250 3.750 28 O -0.412 6.412 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.172 0.828 36 H 0.198 0.802 37 H 0.198 0.802 38 H 0.177 0.823 39 H 0.144 0.856 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.732 -22.182 15.039 28.511 hybrid contribution 0.562 2.065 -0.742 2.265 sum -9.170 -20.117 14.296 26.328 Atomic orbital electron populations 1.21769 0.95092 0.99857 0.99905 1.21585 0.95825 0.80986 0.99934 1.44026 1.52456 1.12451 1.04630 1.19821 1.33418 1.10492 0.83589 0.90803 1.26155 0.95290 0.96577 1.01868 1.70166 1.25045 1.26153 1.28457 0.84877 0.78454 0.78388 0.76189 1.18746 1.18829 1.20583 1.17462 0.87440 0.85922 0.83266 1.90624 1.52028 1.21973 1.86020 1.25195 1.05140 0.93992 0.98259 1.72401 1.05296 1.09542 1.11764 1.42150 1.44663 1.17904 1.01849 1.17899 0.91780 0.83872 1.10418 1.21445 1.00484 0.89675 0.97460 1.21599 0.94734 0.97477 0.98232 1.21731 0.94532 0.98535 0.92489 1.21485 1.02545 0.89824 1.02675 1.18315 0.90973 0.83967 0.99098 1.91521 1.83139 1.50883 1.87341 1.22169 0.92027 0.93343 0.87843 1.21374 1.03129 1.01729 0.91130 1.22436 1.10329 0.98080 1.00602 1.19503 0.80016 0.86658 0.88792 1.90758 1.39124 1.22573 1.88699 0.92222 0.93005 0.95635 0.89988 0.92361 0.91030 0.82799 0.80157 0.80161 0.82288 0.85564 0.86618 0.89024 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.02 8.86 71.98 0.64 -4.38 16 2 C 0.14 6.95 4.86 86.38 0.42 7.37 16 3 N -0.42 -24.78 2.63 -639.19 -1.68 -26.47 16 4 C -0.34 -21.17 9.43 84.12 0.79 -20.38 16 5 H 0.07 4.91 7.27 -2.91 -0.02 4.89 16 6 C 0.01 0.28 5.10 84.97 0.43 0.72 16 7 N -0.86 -44.63 8.03 21.69 0.17 -44.45 16 8 Si 1.00 43.24 29.58 68.60 2.03 45.27 16 9 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 C 0.47 29.15 7.56 86.69 0.66 29.81 16 13 O -0.62 -43.95 15.21 14.88 0.23 -43.72 16 14 C -0.05 -2.69 6.76 43.95 0.30 -2.39 16 15 N -0.16 -6.65 4.48 -44.51 -0.20 -6.85 16 16 N -0.27 -8.25 3.12 -175.67 -0.55 -8.80 16 17 C 0.05 1.07 3.81 38.23 0.15 1.22 16 18 C -0.07 -0.89 8.88 22.39 0.20 -0.69 16 19 C -0.10 -0.58 10.04 22.26 0.22 -0.36 16 20 C -0.06 -0.33 10.04 22.29 0.22 -0.10 16 21 C -0.15 -1.94 10.02 22.29 0.22 -1.72 16 22 C 0.10 2.19 7.30 22.51 0.16 2.36 16 23 F -0.15 -4.70 15.78 44.97 0.71 -3.99 16 24 C 0.16 3.96 6.59 41.34 0.27 4.23 16 25 C -0.12 -1.29 8.92 71.23 0.64 -0.66 16 26 C -0.29 -9.44 9.75 22.52 0.22 -9.22 16 27 C 0.36 17.64 6.98 25.52 0.18 17.82 16 28 O -0.53 -30.81 16.45 13.31 0.22 -30.59 16 29 H 0.06 3.12 6.05 -2.39 -0.01 3.11 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.02 1.20 4.87 -2.38 -0.01 1.18 16 32 H 0.08 4.24 6.00 -2.39 -0.01 4.23 16 33 H 0.06 2.71 5.78 -2.39 -0.01 2.70 16 34 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 35 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.18 -0.29 8.06 -2.91 -0.02 -0.32 16 37 H 0.18 -0.27 8.06 -2.91 -0.02 -0.29 16 38 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 39 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.12 0.91 8.09 -2.39 -0.02 0.89 16 41 H 0.09 0.88 6.64 -2.39 -0.02 0.86 16 42 H 0.19 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -95.44 351.09 7.74 -87.70 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.08 Total: 8.30 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 5.72 Total: 23.61 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -2.25 Total: -86.57 kcal Atomic # 8 Polarization: -74.76 SS G_CDS: 0.45 Total: -74.32 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.71 Total: -3.99 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -95.44 7.74 -87.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068241283.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.630 kcal (2) G-P(sol) polarization free energy of solvation -95.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds