Wall clock time and date at job start Sat Apr 11 2020 07:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99806 * 2 1 4 4 C 1.39843 * 110.99910 * 236.04699 * 2 1 3 5 5 C 1.38828 * 120.07900 * 59.72092 * 4 2 1 6 6 C 1.38158 * 119.94486 * 179.76948 * 5 4 2 7 7 C 1.38272 * 120.11267 * 0.48623 * 6 5 4 8 8 C 1.50698 * 119.91964 * 179.76626 * 7 6 5 9 9 N 1.46497 * 109.47022 * 270.02431 * 8 7 6 10 10 S 1.65606 * 120.00012 * 164.42056 * 9 8 7 11 11 O 1.42094 * 106.40479 * 176.27526 * 10 9 8 12 12 O 1.42101 * 106.40424 * 309.19619 * 10 9 8 13 13 N 1.65602 * 107.21837 * 62.73381 * 10 9 8 14 14 C 1.46506 * 119.99998 * 273.06625 * 13 10 9 15 15 C 1.46497 * 120.00113 * 93.06109 * 13 10 9 16 16 C 1.50695 * 109.46941 * 95.55434 * 15 13 10 17 17 H 1.08001 * 120.00372 * 4.96224 * 16 15 13 18 18 C 1.37877 * 120.00014 * 184.95840 * 16 15 13 19 19 N 1.31522 * 120.00205 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 120.00146 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46948 * 89.99842 * 20 18 16 22 22 H 1.48503 * 109.47047 * 209.99906 * 20 18 16 23 23 H 1.48494 * 109.46888 * 330.00083 * 20 18 16 24 24 C 1.38282 * 120.16040 * 359.79047 * 7 6 5 25 25 C 1.38285 * 120.05140 * 359.95569 * 24 7 6 26 26 F 1.35104 * 120.05426 * 180.02562 * 25 24 7 27 27 H 1.08993 * 109.46844 * 183.95929 * 1 2 3 28 28 H 1.08996 * 109.47009 * 63.95148 * 1 2 3 29 29 H 1.09005 * 109.46917 * 303.95157 * 1 2 3 30 30 H 1.09002 * 109.47214 * 56.04518 * 3 2 1 31 31 H 1.09003 * 109.46630 * 176.04950 * 3 2 1 32 32 H 1.08996 * 109.47083 * 296.04449 * 3 2 1 33 33 H 1.07997 * 120.02690 * 0.02562 * 5 4 2 34 34 H 1.08001 * 119.94280 * 180.25477 * 6 5 4 35 35 H 1.09002 * 109.46914 * 30.02273 * 8 7 6 36 36 H 1.09004 * 109.47242 * 150.02332 * 8 7 6 37 37 H 0.96995 * 120.00576 * 344.41691 * 9 8 7 38 38 H 1.08993 * 109.47010 * 89.99642 * 14 13 10 39 39 H 1.09001 * 109.46707 * 209.99946 * 14 13 10 40 40 H 1.09000 * 109.46965 * 329.99455 * 14 13 10 41 41 H 1.09003 * 109.47438 * 215.55671 * 15 13 10 42 42 H 1.09004 * 109.47090 * 335.56039 * 15 13 10 43 43 H 0.96993 * 120.00076 * 179.97438 * 19 18 16 44 44 H 1.08008 * 119.97587 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9702 -0.7292 -1.0830 5 6 1.6540 -0.3527 -2.3813 6 6 2.1545 -1.0722 -3.4492 7 6 2.9616 -2.1727 -3.2270 8 6 3.5009 -2.9575 -4.3950 9 7 2.5589 -4.0240 -4.7433 10 16 2.6849 -4.7960 -6.2029 11 8 1.7000 -5.8203 -6.2015 12 8 2.7453 -3.7773 -7.1918 13 7 4.1540 -5.5599 -6.2283 14 6 5.3469 -4.8388 -6.6792 15 6 4.2608 -6.9568 -5.7997 16 6 4.1883 -7.8588 -7.0047 17 1 4.1549 -7.4331 -7.9967 18 6 4.1647 -9.2276 -6.8408 19 7 4.1020 -10.0149 -7.8925 20 14 4.2219 -9.9640 -5.1250 21 1 2.8386 -10.1278 -4.6104 22 1 4.8909 -11.2887 -5.1770 23 1 4.9816 -9.0607 -4.2238 24 6 3.2747 -2.5552 -1.9355 25 6 2.7817 -1.8367 -0.8617 26 9 3.0880 -2.2100 0.4001 27 1 -0.3633 -1.0252 0.0710 28 1 -0.3633 0.4513 -0.9232 29 1 -0.3633 0.5740 0.8525 30 1 1.5898 1.9164 0.8524 31 1 3.0828 1.3432 0.0708 32 1 1.7044 1.8724 -0.9233 33 1 1.0208 0.5045 -2.5564 34 1 1.9119 -0.7768 -4.4593 35 1 3.6305 -2.2938 -5.2499 36 1 4.4622 -3.3953 -4.1258 37 1 1.8614 -4.2781 -4.1190 38 1 5.8201 -4.3508 -5.8272 39 1 6.0473 -5.5416 -7.1305 40 1 5.0608 -4.0877 -7.4154 41 1 5.2117 -7.1085 -5.2889 42 1 3.4416 -7.1919 -5.1201 43 1 4.0858 -10.9778 -7.7772 44 1 3.9051 -3.4155 -1.7653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069649703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:16 Heat of formation + Delta-G solvation = -74.979430 kcal Electronic energy + Delta-G solvation = -28252.047495 eV Core-core repulsion = 24053.411393 eV Total energy + Delta-G solvation = -4198.636102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.98358 -40.20934 -37.63902 -36.70590 -35.68407 -35.26954 -34.79181 -32.39935 -31.00173 -30.43023 -28.42151 -28.06312 -26.45257 -25.20240 -23.84641 -23.07004 -21.94977 -21.21582 -19.11905 -17.90337 -17.34071 -17.11173 -16.90006 -16.89223 -16.46061 -16.10773 -15.92988 -15.11104 -15.04906 -14.82824 -14.46283 -14.42691 -14.21777 -13.80744 -13.57633 -13.18090 -13.04709 -12.93752 -12.74914 -12.55835 -12.37468 -12.33396 -12.19085 -12.13513 -11.80613 -11.74967 -11.54209 -11.34856 -11.25588 -11.24394 -10.69117 -10.48003 -10.29280 -9.59898 -9.50339 -9.30993 -9.05218 -8.90825 -8.60151 -8.16803 -6.09751 -4.09488 0.58369 0.84012 1.14592 3.05793 3.27229 3.29363 3.32456 3.34757 3.49966 3.92367 4.03258 4.30620 4.37735 4.39562 4.61594 4.78242 4.83359 4.85859 4.93556 5.03084 5.04514 5.15372 5.20302 5.22632 5.30725 5.40430 5.43229 5.50939 5.57978 5.71209 5.80692 5.84743 5.89204 6.12560 6.17580 6.29790 6.34201 6.41838 6.69923 6.85507 6.92606 7.08008 7.37838 7.56288 8.46938 8.94599 9.49481 11.03682 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017676 B = 0.002695 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.658655 B =10386.790837 C =11165.487765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.509 5.509 3 C 0.028 3.972 4 C 0.051 3.949 5 C -0.122 4.122 6 C -0.102 4.102 7 C -0.066 4.066 8 C 0.160 3.840 9 N -1.132 6.132 10 S 2.782 3.218 11 O -0.960 6.960 12 O -0.991 6.991 13 N -0.990 5.990 14 C 0.092 3.908 15 C 0.228 3.772 16 C -0.535 4.535 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.894 5.894 20 Si 0.873 3.127 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.265 1.265 24 C -0.133 4.133 25 C 0.123 3.877 26 F -0.127 7.127 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.414 0.586 38 H 0.040 0.960 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.265 0.735 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.369 23.150 15.551 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.230 5.230 3 C -0.118 4.118 4 C -0.044 4.044 5 C -0.142 4.142 6 C -0.121 4.121 7 C -0.068 4.068 8 C 0.034 3.966 9 N -0.891 5.891 10 S 2.790 3.210 11 O -0.944 6.944 12 O -0.975 6.975 13 N -0.832 5.832 14 C -0.055 4.055 15 C 0.104 3.896 16 C -0.574 4.574 17 H 0.096 0.904 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.700 3.300 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.153 4.153 25 C 0.102 3.898 26 F -0.106 7.106 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.247 0.753 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.699 22.777 15.155 27.491 hybrid contribution -0.235 -0.353 0.945 1.036 sum -2.934 22.424 16.100 27.760 Atomic orbital electron populations 1.22487 0.85362 1.03033 1.01072 1.59557 1.08862 1.14418 1.40125 1.22474 1.01189 0.87107 1.01055 1.18819 0.99715 0.95834 0.90016 1.21481 1.00362 1.00442 0.91947 1.21096 0.96696 0.94772 0.99577 1.19746 0.97639 0.95739 0.93658 1.20142 0.92075 0.88729 0.95681 1.56385 1.43190 1.49610 1.39919 1.01995 0.73414 0.72666 0.72964 1.93653 1.58230 1.56652 1.85834 1.93535 1.87011 1.59934 1.56996 1.57373 1.23909 1.22085 1.79794 1.21433 0.88567 0.96921 0.98560 1.19439 0.97303 0.76489 0.96335 1.21371 1.51565 0.90691 0.93737 0.90400 1.24881 0.94309 0.96980 0.96778 1.69895 1.49965 1.04133 1.29242 0.86905 0.78963 0.79051 0.85099 1.19736 1.20974 1.18983 1.21120 1.02168 1.01021 0.91034 1.17496 0.98152 0.94588 0.79516 1.91514 1.91189 1.90546 1.37303 0.90937 0.94801 0.90614 0.90632 0.91023 0.94853 0.85208 0.84716 0.89230 0.90510 0.75286 0.94154 0.90039 0.91238 0.94931 0.95082 0.92488 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.34 60.07 0.56 0.75 16 2 N -0.51 -4.42 4.83 -186.77 -0.90 -5.32 16 3 C 0.03 0.18 9.39 60.07 0.56 0.75 16 4 C 0.05 0.49 4.74 -83.67 -0.40 0.09 16 5 C -0.12 -1.00 8.58 -39.39 -0.34 -1.34 16 6 C -0.10 -0.88 9.69 -39.60 -0.38 -1.26 16 7 C -0.07 -0.63 5.28 -104.59 -0.55 -1.18 16 8 C 0.16 1.65 6.38 -5.20 -0.03 1.62 16 9 N -1.13 -14.77 6.04 -11.66 -0.07 -14.84 16 10 S 2.78 51.32 6.09 -107.50 -0.65 50.66 16 11 O -0.96 -21.98 16.99 -57.17 -0.97 -22.95 16 12 O -0.99 -19.42 16.34 -57.17 -0.93 -20.35 16 13 N -0.99 -19.01 3.23 -123.05 -0.40 -19.41 16 14 C 0.09 1.42 10.69 59.85 0.64 2.06 16 15 C 0.23 5.22 4.16 -5.20 -0.02 5.20 16 16 C -0.53 -15.05 9.93 -34.44 -0.34 -15.39 16 17 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.89 -27.40 13.96 55.43 0.77 -26.62 16 20 Si 0.87 21.04 27.37 -169.99 -4.65 16.38 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -5.89 6.69 56.52 0.38 -5.51 16 24 C -0.13 -1.29 9.67 -39.55 -0.38 -1.68 16 25 C 0.12 1.30 7.31 -39.25 -0.29 1.02 16 26 F -0.13 -1.53 17.08 2.25 0.04 -1.49 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.20 7.11 -51.93 -0.37 -0.17 16 29 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.03 0.19 7.36 -51.93 -0.38 -0.19 16 33 H 0.13 0.84 7.02 -52.49 -0.37 0.47 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.09 0.88 7.74 -51.93 -0.40 0.48 16 36 H 0.08 0.70 8.00 -51.93 -0.42 0.28 16 37 H 0.41 4.86 8.65 -34.47 -0.30 4.56 16 38 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 39 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.07 1.03 7.05 -51.93 -0.37 0.66 16 41 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 42 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -35.65 381.69 -9.38 -45.03 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.29 Total: 0.50 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -1.07 Total: -7.35 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -0.60 Total: -66.19 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.91 Total: -43.30 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.65 Total: 16.38 kcal Atomic # 16 Polarization: 51.32 SS G_CDS: -0.65 Total: 50.66 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.65 -9.38 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069649703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.954 kcal (2) G-P(sol) polarization free energy of solvation -35.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds