Wall clock time and date at job start Sat Apr 11 2020 07:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46818 * 2 1 4 4 C 1.34946 * 126.03366 * 125.00347 * 3 2 1 5 5 C 1.35317 * 107.74749 * 180.02562 * 4 3 2 6 6 C 1.50690 * 126.04318 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47377 * 89.99712 * 6 5 4 8 8 C 1.46498 * 120.00420 * 270.00587 * 7 6 5 9 9 C 1.34780 * 119.99856 * 89.99622 * 7 6 5 10 10 O 1.21611 * 119.99919 * 4.12271 * 9 7 6 11 11 C 1.47428 * 119.99872 * 184.12365 * 9 7 6 12 12 C 1.39675 * 120.21432 * 310.78948 * 11 9 7 13 13 C 1.37811 * 119.93870 * 180.02562 * 12 11 9 14 14 C 1.38658 * 120.37774 * 359.97438 * 13 12 11 15 15 C 1.37908 * 120.44094 * 0.02562 * 14 13 12 16 16 C 1.39113 * 120.05129 * 0.02562 * 15 14 13 17 17 S 1.76190 * 120.18822 * 179.97438 * 16 15 14 18 18 C 1.76203 * 100.00344 * 352.01394 * 17 16 15 19 19 H 1.08000 * 119.99401 * 4.14956 * 18 17 16 20 20 C 1.38802 * 120.00078 * 184.15290 * 18 17 16 21 21 N 1.31557 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00203 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46899 * 59.99818 * 22 20 18 24 24 H 1.48497 * 109.47306 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46969 * 300.00126 * 22 20 18 26 26 C 1.39877 * 107.91756 * 0.25955 * 5 4 3 27 27 N 1.30841 * 108.19937 * 359.55635 * 26 5 4 28 28 H 1.08995 * 109.47048 * 60.00207 * 1 2 3 29 29 H 1.09002 * 109.46680 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47417 * 299.99569 * 1 2 3 31 31 H 1.08999 * 109.47091 * 240.00246 * 2 1 3 32 32 H 1.09000 * 109.47455 * 120.00001 * 2 1 3 33 33 H 1.08004 * 126.12726 * 0.03365 * 4 3 2 34 34 H 1.08997 * 109.47265 * 330.00060 * 6 5 4 35 35 H 1.09001 * 109.47609 * 209.99732 * 6 5 4 36 36 H 1.08999 * 109.46605 * 272.52920 * 8 7 6 37 37 H 1.09001 * 109.47179 * 32.51757 * 8 7 6 38 38 H 1.08998 * 109.47526 * 152.52729 * 8 7 6 39 39 H 1.07997 * 120.02957 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.80871 * 180.02562 * 13 12 11 41 41 H 1.07998 * 119.77697 * 179.74694 * 14 13 12 42 42 H 1.08002 * 119.97246 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00184 * 180.02562 * 21 20 18 44 44 H 1.07994 * 125.89791 * 179.73897 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0712 3.2138 0.5464 6 6 3.9538 4.2002 1.2666 7 7 5.3070 4.1434 0.7080 8 6 6.2945 3.2204 1.2727 9 6 5.6433 4.9403 -0.3257 10 8 4.8483 5.7590 -0.7460 11 6 6.9749 4.8194 -0.9468 12 6 8.1229 4.8061 -0.1513 13 6 9.3648 4.6934 -0.7380 14 6 9.4829 4.5923 -2.1158 15 6 8.3598 4.6038 -2.9160 16 6 7.0973 4.7179 -2.3431 17 16 5.6601 4.7336 -3.3621 18 6 6.4134 4.8223 -4.9525 19 1 7.4888 4.7817 -5.0435 20 6 5.6248 4.9444 -6.0882 21 7 4.3148 4.9934 -5.9772 22 14 6.4234 5.0392 -7.7742 23 1 7.2142 3.8059 -8.0173 24 1 5.3709 5.1649 -8.8142 25 1 7.3202 6.2215 -7.8313 26 6 2.3068 3.4745 -0.5956 27 7 1.6800 2.3750 -0.9275 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3192 1.4125 1.7357 34 1 3.9879 3.9506 2.3271 35 1 3.5516 5.2057 1.1428 36 1 6.8112 3.7039 2.1017 37 1 5.7897 2.3238 1.6326 38 1 7.0173 2.9467 0.5041 39 1 8.0374 4.8841 0.9224 40 1 10.2511 4.6830 -0.1209 41 1 10.4612 4.5085 -2.5655 42 1 8.4606 4.5250 -3.9885 43 1 3.7637 5.0783 -6.7709 44 1 2.2469 4.4192 -1.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072889842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:19 Heat of formation + Delta-G solvation = 80.951359 kcal Electronic energy + Delta-G solvation = -27512.572774 eV Core-core repulsion = 23751.467564 eV Total energy + Delta-G solvation = -3761.105211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05556 -39.56658 -37.49386 -35.35017 -34.32572 -32.73270 -31.41300 -30.32173 -30.19174 -29.67616 -26.88544 -25.85068 -25.49750 -23.73343 -22.55188 -21.96962 -20.64395 -20.16546 -19.21205 -17.82662 -16.95048 -16.73979 -16.09780 -15.83636 -15.33566 -15.24562 -15.02662 -14.34403 -14.32177 -14.03737 -13.82318 -13.47067 -13.03228 -12.98818 -12.91361 -12.78202 -12.54834 -12.40492 -12.25792 -12.19150 -11.90399 -11.60236 -11.52217 -11.45224 -11.16081 -11.10798 -10.99839 -10.30607 -10.29642 -9.77034 -9.53977 -9.39936 -9.19376 -8.72731 -8.45517 -8.39732 -8.26119 -8.13794 -6.49910 -6.44252 -4.14599 1.69239 2.02872 2.04100 2.63205 2.90052 3.11041 3.16074 3.19963 3.39824 3.41473 3.68638 4.06195 4.39710 4.43650 4.77352 4.83808 4.97332 5.01518 5.02861 5.14258 5.22249 5.28372 5.33951 5.37024 5.45090 5.53572 5.60407 5.61961 5.74439 5.87376 5.88862 5.93309 5.98605 6.07293 6.16153 6.30010 6.40191 6.60826 6.84881 6.91110 6.93144 7.04717 7.15709 7.16403 7.46636 7.61019 7.78821 7.95556 8.17792 8.76351 9.01717 10.60993 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004263 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.903263 B = 6566.853494 C = 8907.175500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 N -0.378 5.378 4 C 0.059 3.941 5 C -0.253 4.253 6 C 0.196 3.804 7 N -0.614 5.614 8 C 0.080 3.920 9 C 0.569 3.431 10 O -0.512 6.512 11 C -0.162 4.162 12 C -0.069 4.069 13 C -0.183 4.183 14 C -0.081 4.081 15 C -0.154 4.154 16 C -0.048 4.048 17 S 0.113 5.887 18 C -0.571 4.571 19 H 0.093 0.907 20 C 0.081 3.919 21 N -0.857 5.857 22 Si 0.922 3.078 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.269 1.269 26 C 0.079 3.921 27 N -0.293 5.293 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.167 0.833 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.138 0.862 43 H 0.275 0.725 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -9.113 17.066 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.011 3.989 3 N -0.160 5.160 4 C -0.088 4.088 5 C -0.266 4.266 6 C 0.073 3.927 7 N -0.349 5.349 8 C -0.063 4.063 9 C 0.358 3.642 10 O -0.387 6.387 11 C -0.176 4.176 12 C -0.089 4.089 13 C -0.207 4.207 14 C -0.102 4.102 15 C -0.180 4.180 16 C -0.167 4.167 17 S 0.374 5.626 18 C -0.718 4.718 19 H 0.110 0.890 20 C -0.130 4.130 21 N -0.490 5.490 22 Si 0.747 3.253 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.194 1.194 26 C -0.108 4.108 27 N -0.113 5.113 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.184 0.816 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.155 0.845 43 H 0.085 0.915 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.602 -9.392 15.917 18.664 hybrid contribution 2.574 0.242 -0.783 2.701 sum -0.028 -9.150 15.134 17.685 Atomic orbital electron populations 1.22041 0.93981 1.02535 1.03634 1.21603 0.95930 0.77949 1.03435 1.48688 1.35897 1.10128 1.21294 1.22226 0.95789 0.94436 0.96375 1.20445 1.08050 0.95524 1.02541 1.19514 0.80082 0.98381 0.94741 1.47861 1.11895 1.40506 1.34642 1.21856 0.92694 0.92773 0.98990 1.18329 0.87036 0.80246 0.78627 1.90792 1.51705 1.35281 1.60884 1.19169 0.92679 1.13139 0.92595 1.20971 0.91855 0.97813 0.98224 1.20648 0.96474 1.08824 0.94780 1.21062 0.97751 0.97648 0.93747 1.21403 0.91298 1.04320 1.00943 1.22890 1.01038 0.96893 0.95897 1.84022 1.01768 1.79661 0.97119 1.23534 0.96585 1.59408 0.92276 0.88977 1.25094 0.94747 0.93252 0.99892 1.69970 1.03783 1.44154 1.31085 0.86161 0.79044 0.79246 0.80875 1.19536 1.20533 1.19417 1.23957 0.94279 0.97506 0.95038 1.77421 1.24471 0.96753 1.12689 0.90939 0.90997 0.92243 0.89934 0.89073 0.81603 0.90553 0.89031 0.93053 0.92162 0.90199 0.86663 0.87047 0.87062 0.84488 0.91509 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 10.10 37.16 0.38 -1.04 16 2 C 0.13 1.24 7.23 -4.04 -0.03 1.21 16 3 N -0.38 -5.13 3.68 -61.36 -0.23 -5.35 16 4 C 0.06 0.72 11.36 -17.22 -0.20 0.52 16 5 C -0.25 -3.68 5.68 -105.06 -0.60 -4.27 16 6 C 0.20 2.59 5.93 -5.20 -0.03 2.55 16 7 N -0.61 -9.24 2.86 -184.24 -0.53 -9.76 16 8 C 0.08 0.91 9.09 59.85 0.54 1.45 16 9 C 0.57 11.21 6.70 -12.52 -0.08 11.13 16 10 O -0.51 -11.87 15.28 5.27 0.08 -11.79 16 11 C -0.16 -3.24 4.90 -104.75 -0.51 -3.75 16 12 C -0.07 -1.11 7.63 -39.20 -0.30 -1.40 16 13 C -0.18 -2.82 10.02 -39.58 -0.40 -3.21 16 14 C -0.08 -1.39 10.03 -39.55 -0.40 -1.78 16 15 C -0.15 -3.25 9.24 -39.38 -0.36 -3.61 16 16 C -0.05 -1.12 6.13 -38.39 -0.24 -1.36 16 17 S 0.11 3.05 19.72 -107.50 -2.12 0.93 16 18 C -0.57 -15.98 9.08 30.94 0.28 -15.70 16 19 H 0.09 2.43 4.86 -52.49 -0.25 2.18 16 20 C 0.08 2.26 5.49 -17.46 -0.10 2.16 16 21 N -0.86 -25.12 13.22 55.49 0.73 -24.38 16 22 Si 0.92 20.99 29.55 -169.99 -5.02 15.96 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.08 1.40 11.96 -17.36 -0.21 1.19 16 27 N -0.29 -5.16 12.42 30.63 0.38 -4.78 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 35 H 0.09 1.33 7.37 -51.93 -0.38 0.95 16 36 H 0.05 0.46 7.53 -51.93 -0.39 0.07 16 37 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.08 1.03 5.74 -51.93 -0.30 0.73 16 39 H 0.12 1.50 6.57 -52.49 -0.35 1.15 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.14 3.01 4.98 -52.49 -0.26 2.75 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.19 3.46 8.06 -52.49 -0.42 3.04 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -35.06 383.00 -8.88 -43.95 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.71 Total: 5.38 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.24 Total: -15.92 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.36 Total: -44.29 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.12 Total: 0.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.06 -8.88 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072889842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.897 kcal (2) G-P(sol) polarization free energy of solvation -35.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds