Wall clock time and date at job start Sat Apr 11 2020 07:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46818 * 2 1 4 4 C 1.34946 * 126.03366 * 125.00347 * 3 2 1 5 5 C 1.35317 * 107.74749 * 180.02562 * 4 3 2 6 6 C 1.50690 * 126.04318 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47377 * 89.99712 * 6 5 4 8 8 C 1.46498 * 120.00420 * 270.00587 * 7 6 5 9 9 C 1.34780 * 119.99856 * 89.99622 * 7 6 5 10 10 O 1.21611 * 119.99919 * 4.12271 * 9 7 6 11 11 C 1.47428 * 119.99872 * 184.12365 * 9 7 6 12 12 C 1.39675 * 120.21432 * 310.78948 * 11 9 7 13 13 C 1.37811 * 119.93870 * 180.02562 * 12 11 9 14 14 C 1.38658 * 120.37774 * 359.97438 * 13 12 11 15 15 C 1.37908 * 120.44094 * 0.02562 * 14 13 12 16 16 C 1.39113 * 120.05129 * 0.02562 * 15 14 13 17 17 S 1.76190 * 120.18822 * 179.97438 * 16 15 14 18 18 C 1.76203 * 100.00344 * 352.01394 * 17 16 15 19 19 H 1.08000 * 119.99401 * 4.14956 * 18 17 16 20 20 C 1.38802 * 120.00078 * 184.15290 * 18 17 16 21 21 N 1.31557 * 120.00192 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00203 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46899 * 59.99818 * 22 20 18 24 24 H 1.48497 * 109.47306 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46969 * 300.00126 * 22 20 18 26 26 C 1.39877 * 107.91756 * 0.25955 * 5 4 3 27 27 N 1.30841 * 108.19937 * 359.55635 * 26 5 4 28 28 H 1.08995 * 109.47048 * 60.00207 * 1 2 3 29 29 H 1.09002 * 109.46680 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47417 * 299.99569 * 1 2 3 31 31 H 1.08999 * 109.47091 * 240.00246 * 2 1 3 32 32 H 1.09000 * 109.47455 * 120.00001 * 2 1 3 33 33 H 1.08004 * 126.12726 * 0.03365 * 4 3 2 34 34 H 1.08997 * 109.47265 * 330.00060 * 6 5 4 35 35 H 1.09001 * 109.47609 * 209.99732 * 6 5 4 36 36 H 1.08999 * 109.46605 * 272.52920 * 8 7 6 37 37 H 1.09001 * 109.47179 * 32.51757 * 8 7 6 38 38 H 1.08998 * 109.47526 * 152.52729 * 8 7 6 39 39 H 1.07997 * 120.02957 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.80871 * 180.02562 * 13 12 11 41 41 H 1.07998 * 119.77697 * 179.74694 * 14 13 12 42 42 H 1.08002 * 119.97246 * 179.97438 * 15 14 13 43 43 H 0.97002 * 120.00184 * 180.02562 * 21 20 18 44 44 H 1.07994 * 125.89791 * 179.73897 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8730 1.9211 0.8939 5 6 3.0712 3.2138 0.5464 6 6 3.9538 4.2002 1.2666 7 7 5.3070 4.1434 0.7080 8 6 6.2945 3.2204 1.2727 9 6 5.6433 4.9403 -0.3257 10 8 4.8483 5.7590 -0.7460 11 6 6.9749 4.8194 -0.9468 12 6 8.1229 4.8061 -0.1513 13 6 9.3648 4.6934 -0.7380 14 6 9.4829 4.5923 -2.1158 15 6 8.3598 4.6038 -2.9160 16 6 7.0973 4.7179 -2.3431 17 16 5.6601 4.7336 -3.3621 18 6 6.4134 4.8223 -4.9525 19 1 7.4888 4.7817 -5.0435 20 6 5.6248 4.9444 -6.0882 21 7 4.3148 4.9934 -5.9772 22 14 6.4234 5.0392 -7.7742 23 1 7.2142 3.8059 -8.0173 24 1 5.3709 5.1649 -8.8142 25 1 7.3202 6.2215 -7.8313 26 6 2.3068 3.4745 -0.5956 27 7 1.6800 2.3750 -0.9275 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.3192 1.4125 1.7357 34 1 3.9879 3.9506 2.3271 35 1 3.5516 5.2057 1.1428 36 1 6.8112 3.7039 2.1017 37 1 5.7897 2.3238 1.6326 38 1 7.0173 2.9467 0.5041 39 1 8.0374 4.8841 0.9224 40 1 10.2511 4.6830 -0.1209 41 1 10.4612 4.5085 -2.5655 42 1 8.4606 4.5250 -3.9885 43 1 3.7637 5.0783 -6.7709 44 1 2.2469 4.4192 -1.1154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072889842.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:18 Heat of formation + Delta-G solvation = 57.842243 kcal Electronic energy + Delta-G solvation = -27513.574861 eV Core-core repulsion = 23751.467564 eV Total energy + Delta-G solvation = -3762.107297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.17988 -40.97615 -38.95671 -36.62939 -35.27610 -34.80333 -32.72332 -31.82549 -31.36833 -30.77065 -27.97061 -27.79538 -26.73539 -24.67987 -23.93334 -23.44652 -21.68834 -21.42008 -20.61427 -19.59128 -18.18831 -17.95787 -17.61151 -17.14809 -17.04098 -16.46538 -16.28776 -15.76572 -15.61703 -15.26703 -15.00837 -14.79718 -14.62768 -14.38878 -14.11272 -13.93825 -13.67626 -13.63374 -13.36771 -13.24151 -13.06338 -12.99211 -12.94601 -12.87758 -12.56890 -12.50197 -12.26465 -12.07745 -11.48504 -11.41226 -11.38911 -10.99841 -10.48901 -10.34651 -10.23696 -9.72461 -9.57270 -9.30390 -8.50163 -8.46673 -6.27330 0.20976 0.54926 0.98621 1.23286 1.36132 1.41969 1.57260 1.63530 1.71557 1.97527 2.17365 2.49269 2.83618 2.98429 3.18511 3.59311 3.78559 3.98291 4.07728 4.08645 4.16832 4.25853 4.31119 4.36265 4.43072 4.50684 4.64125 4.65274 4.73096 4.79393 4.84785 4.86608 4.90748 5.00666 5.06362 5.11732 5.19090 5.23212 5.36438 5.50336 5.57225 5.65791 5.68967 5.77036 6.07591 6.17496 6.25502 6.51534 6.77382 6.91628 7.36444 8.58013 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004263 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.903263 B = 6566.853494 C = 8907.175500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 N -0.374 5.374 4 C 0.085 3.915 5 C -0.271 4.271 6 C 0.198 3.802 7 N -0.604 5.604 8 C 0.070 3.930 9 C 0.556 3.444 10 O -0.565 6.565 11 C -0.165 4.165 12 C -0.060 4.060 13 C -0.150 4.150 14 C -0.077 4.077 15 C -0.174 4.174 16 C -0.070 4.070 17 S -0.003 6.003 18 C -0.578 4.578 19 H 0.099 0.901 20 C 0.021 3.979 21 N -0.906 5.906 22 Si 0.997 3.003 23 H -0.258 1.258 24 H -0.274 1.274 25 H -0.260 1.260 26 C 0.047 3.953 27 N -0.341 5.341 28 H 0.037 0.963 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.226 0.774 34 H 0.131 0.869 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.160 0.840 40 H 0.167 0.833 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.275 0.725 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.485 -11.601 21.416 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 N -0.157 5.157 4 C -0.063 4.063 5 C -0.283 4.283 6 C 0.075 3.925 7 N -0.336 5.336 8 C -0.072 4.072 9 C 0.345 3.655 10 O -0.444 6.444 11 C -0.177 4.177 12 C -0.079 4.079 13 C -0.173 4.173 14 C -0.097 4.097 15 C -0.199 4.199 16 C -0.187 4.187 17 S 0.253 5.747 18 C -0.725 4.725 19 H 0.116 0.884 20 C -0.185 4.185 21 N -0.541 5.541 22 Si 0.818 3.182 23 H -0.182 1.182 24 H -0.199 1.199 25 H -0.185 1.185 26 C -0.139 4.139 27 N -0.163 5.163 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.242 0.758 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.178 0.822 40 H 0.185 0.815 41 H 0.167 0.833 42 H 0.134 0.866 43 H 0.084 0.916 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.589 -11.922 20.364 23.651 hybrid contribution 1.475 0.903 -1.783 2.484 sum 3.064 -11.019 18.581 21.819 Atomic orbital electron populations 1.21998 0.93730 1.03949 1.01962 1.22079 0.96301 0.75906 1.05586 1.49077 1.35523 1.10741 1.20338 1.22995 0.93686 0.93249 0.96411 1.20602 1.08582 0.97271 1.01869 1.19689 0.78771 0.96957 0.97073 1.47929 1.13293 1.39490 1.32886 1.22206 0.92082 0.93600 0.99280 1.18538 0.86718 0.80658 0.79588 1.90775 1.52945 1.38003 1.62675 1.19539 0.94648 1.11811 0.91728 1.21478 0.90541 0.95841 1.00089 1.21332 0.97975 1.03664 0.94307 1.21492 0.97736 0.95911 0.94589 1.21421 0.92104 1.05699 1.00693 1.22759 0.99458 0.99891 0.96607 1.84215 1.06597 1.84489 0.99391 1.23806 0.96890 1.59273 0.92549 0.88388 1.26212 0.95207 0.92779 1.04299 1.70149 1.05545 1.46341 1.32028 0.85024 0.78134 0.79801 0.75262 1.18186 1.19891 1.18460 1.23706 0.96527 0.96714 0.96941 1.77308 1.26033 0.97880 1.15058 0.94348 0.87976 0.92156 0.90456 0.84110 0.75754 0.85121 0.91722 0.89287 0.88911 0.91853 0.82219 0.81530 0.83343 0.86585 0.91604 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.10 71.98 0.73 -1.86 16 2 C 0.12 2.00 7.23 86.38 0.62 2.63 16 3 N -0.37 -9.89 3.68 -348.04 -1.28 -11.17 16 4 C 0.08 1.82 11.36 83.54 0.95 2.77 16 5 C -0.27 -7.89 5.68 -20.15 -0.11 -8.01 16 6 C 0.20 4.98 5.93 85.63 0.51 5.49 16 7 N -0.60 -17.14 2.86 -855.05 -2.44 -19.58 16 8 C 0.07 1.23 9.09 127.77 1.16 2.39 16 9 C 0.56 22.51 6.70 86.66 0.58 23.09 16 10 O -0.57 -28.57 15.28 -4.07 -0.06 -28.64 16 11 C -0.16 -6.55 4.90 -19.95 -0.10 -6.65 16 12 C -0.06 -1.66 7.63 22.52 0.17 -1.49 16 13 C -0.15 -3.72 10.02 22.27 0.22 -3.49 16 14 C -0.08 -2.35 10.03 22.29 0.22 -2.13 16 15 C -0.17 -7.41 9.24 22.40 0.21 -7.20 16 16 C -0.07 -3.39 6.13 23.04 0.14 -3.25 16 17 S 0.00 -0.18 19.72 -56.49 -1.11 -1.30 16 18 C -0.58 -34.85 9.08 67.95 0.62 -34.24 16 19 H 0.10 5.53 4.86 -2.91 -0.01 5.52 16 20 C 0.02 1.22 5.49 84.87 0.47 1.68 16 21 N -0.91 -57.59 13.22 21.65 0.29 -57.30 16 22 Si 1.00 45.22 29.55 68.60 2.03 47.25 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 26 C 0.05 1.84 11.96 85.24 1.02 2.86 16 27 N -0.34 -13.05 12.42 -57.02 -0.71 -13.76 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.14 0.98 8.07 -2.39 -0.02 0.96 16 33 H 0.23 2.01 8.06 -2.91 -0.02 1.98 16 34 H 0.13 1.87 8.07 -2.39 -0.02 1.85 16 35 H 0.06 1.98 7.37 -2.39 -0.02 1.97 16 36 H 0.09 0.96 7.53 -2.39 -0.02 0.94 16 37 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 38 H 0.06 1.36 5.74 -2.39 -0.01 1.34 16 39 H 0.16 3.06 6.57 -2.91 -0.02 3.04 16 40 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 41 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 42 H 0.12 5.35 4.98 -2.91 -0.01 5.33 16 43 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 44 H 0.15 6.65 8.06 -2.91 -0.02 6.62 16 Total: -1.00 -92.97 383.00 5.14 -87.83 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 1.02 Total: 24.07 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 7.41 Total: -27.41 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.15 Total: -101.82 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.06 Total: -28.64 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.11 Total: -1.30 kcal Total: -92.97 5.14 -87.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072889842.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.675 kcal (2) G-P(sol) polarization free energy of solvation -92.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds