Wall clock time and date at job start Sat Apr 11 2020 07:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46778 * 2 1 4 4 C 1.36938 * 120.00278 * 265.77573 * 3 2 1 5 5 H 1.08004 * 120.00124 * 146.20165 * 4 3 2 6 6 C 1.38813 * 119.99869 * 326.20853 * 4 3 2 7 7 N 1.31615 * 119.99737 * 337.69591 * 6 4 3 8 8 Si 1.86799 * 119.99855 * 157.69622 * 6 4 3 9 9 H 1.48501 * 109.47164 * 60.00162 * 8 6 4 10 10 H 1.48497 * 109.46864 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47469 * 299.99760 * 8 6 4 12 12 C 1.46504 * 119.99805 * 85.78144 * 3 2 1 13 13 C 1.50696 * 109.47251 * 89.99908 * 12 3 2 14 14 C 1.33644 * 122.75139 * 94.99701 * 13 12 3 15 15 S 1.76199 * 107.92535 * 179.75934 * 14 13 12 16 16 C 1.70974 * 90.28309 * 0.28302 * 15 14 13 17 17 C 1.50698 * 124.91889 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.46832 * 269.69534 * 17 16 15 19 19 C 1.34776 * 119.99821 * 179.97438 * 18 17 16 20 20 O 1.21548 * 120.00146 * 0.02562 * 19 18 17 21 21 C 1.47854 * 119.99862 * 180.02562 * 19 18 17 22 22 C 1.39578 * 120.14180 * 359.71878 * 21 19 18 23 23 C 1.37957 * 119.85027 * 180.28133 * 22 21 19 24 24 C 1.38363 * 120.14259 * 359.97438 * 23 22 21 25 25 C 1.38359 * 120.29437 * 0.02562 * 24 23 22 26 26 C 1.37955 * 120.14508 * 359.97438 * 25 24 23 27 27 N 1.29030 * 110.16715 * 359.70988 * 16 15 14 28 28 H 1.08998 * 109.47286 * 299.99575 * 1 2 3 29 29 H 1.08998 * 109.47015 * 60.00401 * 1 2 3 30 30 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47286 * 240.00424 * 2 1 3 32 32 H 1.09004 * 109.47670 * 119.99788 * 2 1 3 33 33 H 0.97009 * 119.99558 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47199 * 329.99646 * 12 3 2 35 35 H 1.09011 * 109.46960 * 209.99653 * 12 3 2 36 36 H 1.08002 * 126.03336 * 359.97438 * 14 13 12 37 37 H 1.08997 * 109.47433 * 149.69518 * 17 16 15 38 38 H 1.09000 * 109.46897 * 29.69287 * 17 16 15 39 39 H 0.96999 * 120.00132 * 359.97438 * 18 17 16 40 40 H 1.07995 * 120.07525 * 0.27479 * 22 21 19 41 41 H 1.07994 * 119.92868 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.85147 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.92316 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.07327 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3288 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2998 6 6 2.8612 1.2600 -2.2310 7 7 3.4701 0.1183 -1.9897 8 14 2.7135 1.8875 -3.9843 9 1 3.3860 3.2067 -4.0962 10 1 3.3589 0.9233 -4.9111 11 1 1.2789 2.0315 -4.3393 12 6 2.1743 2.1030 1.2654 13 6 3.5638 1.8782 1.8038 14 6 4.5716 2.7272 1.5811 15 16 6.0035 2.0929 2.3884 16 6 5.1068 0.7449 2.9381 17 6 5.6620 -0.3755 3.7792 18 7 6.1739 -1.4344 2.9056 19 6 6.7217 -2.5434 3.4408 20 8 6.7906 -2.6653 4.6482 21 6 7.2388 -3.6118 2.5592 22 6 7.1558 -3.4776 1.1724 23 6 7.6350 -4.4807 0.3555 24 6 8.1972 -5.6177 0.9082 25 6 8.2825 -5.7570 2.2822 26 6 7.8071 -4.7613 3.1103 27 7 3.8846 0.8286 2.5332 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8425 -0.3971 -2.7223 34 1 1.4422 1.7370 1.9851 35 1 2.0177 3.1686 1.0975 36 1 4.5169 3.6424 1.0103 37 1 4.8731 -0.7783 4.4144 38 1 6.4716 0.0046 4.4022 39 1 6.1185 -1.3373 1.9421 40 1 6.7175 -2.5904 0.7398 41 1 7.5718 -4.3780 -0.7177 42 1 8.5705 -6.4004 0.2643 43 1 8.7221 -6.6472 2.7072 44 1 7.8739 -4.8715 4.1826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079404089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:22 Heat of formation + Delta-G solvation = 57.951833 kcal Electronic energy + Delta-G solvation = -27032.045844 eV Core-core repulsion = 23269.943299 eV Total energy + Delta-G solvation = -3762.102545 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.24640 -39.31010 -38.27244 -35.91061 -34.89995 -32.02573 -31.52095 -31.07032 -30.68333 -29.08041 -27.25229 -26.19218 -23.97275 -23.52262 -22.69548 -22.09064 -20.50468 -20.36294 -19.16408 -18.39079 -17.23756 -16.46464 -16.40365 -15.99040 -15.25414 -15.13090 -14.91447 -14.73139 -14.46485 -14.20446 -13.78404 -13.73826 -13.50279 -13.46306 -13.06805 -12.79613 -12.61892 -12.28335 -12.15310 -12.07658 -11.81663 -11.40991 -11.23127 -11.00305 -10.93124 -10.88869 -10.59967 -10.13408 -10.06937 -9.97962 -9.62967 -9.28749 -9.17830 -9.13948 -8.99697 -8.87995 -8.56853 -8.23248 -6.75641 -5.90695 -3.42430 0.72869 1.12948 1.22235 1.83747 2.23474 2.81347 3.05339 3.28808 3.35141 3.37458 3.59908 3.77428 4.31688 4.39470 4.60416 4.70318 4.80029 4.97624 5.18629 5.22306 5.24786 5.34829 5.52454 5.59603 5.64345 5.71787 5.83480 5.86081 6.02540 6.17382 6.23207 6.28852 6.29647 6.32323 6.43858 6.54067 6.58916 6.69006 6.72288 6.81368 6.93367 7.26559 7.44334 7.66106 7.76048 8.13466 8.33371 8.37907 9.06436 9.68856 10.26211 11.08418 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.003424 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.694628 B = 8175.131581 C = 9643.240607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 N -0.566 5.566 4 C -0.259 4.259 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.880 5.880 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.208 3.792 13 C 0.068 3.932 14 C -0.229 4.229 15 S 0.079 5.921 16 C 0.003 3.997 17 C 0.209 3.791 18 N -0.716 5.716 19 C 0.562 3.438 20 O -0.542 6.542 21 C -0.134 4.134 22 C -0.080 4.080 23 C -0.125 4.125 24 C -0.096 4.096 25 C -0.132 4.132 26 C -0.061 4.061 27 N -0.431 5.431 28 H 0.033 0.967 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.097 0.903 32 H 0.028 0.972 33 H 0.255 0.745 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.171 0.829 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.408 0.592 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 -5.520 7.200 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 N -0.284 5.284 4 C -0.389 4.389 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.078 3.922 13 C -0.066 4.066 14 C -0.369 4.369 15 S 0.331 5.669 16 C -0.275 4.275 17 C 0.083 3.917 18 N -0.369 5.369 19 C 0.350 3.650 20 O -0.421 6.421 21 C -0.137 4.137 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.114 4.114 25 C -0.150 4.150 26 C -0.080 4.080 27 N -0.147 5.147 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.188 0.812 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.244 0.756 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.235 -5.800 8.196 13.642 hybrid contribution -0.775 0.477 -2.049 2.242 sum 8.460 -5.323 6.147 11.734 Atomic orbital electron populations 1.22278 1.00683 0.98798 1.00374 1.20987 0.89778 0.85854 1.02143 1.44119 1.72022 1.12254 1.00013 1.19121 1.36300 0.94264 0.89189 0.91793 1.25129 0.96643 0.97782 0.99231 1.69998 1.35628 1.15562 1.30966 0.86441 0.78098 0.78147 0.84536 1.20719 1.21592 1.20763 1.19805 0.86844 0.96950 0.88587 1.21814 1.01682 0.88431 0.94646 1.26817 0.93637 1.06986 1.09453 1.83597 1.16973 1.18964 1.47330 1.26568 0.93246 1.01293 1.06397 1.19585 0.98644 0.83453 0.90061 1.45963 1.61206 1.18572 1.11143 1.18250 0.77441 0.81527 0.87793 1.90754 1.57435 1.79383 1.14518 1.19928 1.04035 0.96249 0.93491 1.21464 0.96832 0.99202 0.92398 1.21176 0.98885 0.93832 1.00411 1.21393 0.97316 0.97458 0.95253 1.21141 1.01057 0.99223 0.93603 1.21263 0.94357 0.91636 1.00774 1.66082 1.15694 1.22378 1.10535 0.94754 0.93314 0.94642 0.88588 0.95368 0.93474 0.92691 0.91938 0.81203 0.88720 0.89568 0.75595 0.85215 0.85159 0.85633 0.85419 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 10.24 37.16 0.38 -2.88 16 2 C 0.14 3.23 5.97 -4.04 -0.02 3.20 16 3 N -0.57 -13.42 2.44 -174.60 -0.43 -13.84 16 4 C -0.26 -6.62 9.49 -15.06 -0.14 -6.77 16 5 H 0.06 1.61 7.92 -52.48 -0.42 1.20 16 6 C 0.01 0.34 4.93 -17.43 -0.09 0.26 16 7 N -0.88 -23.91 11.32 55.49 0.63 -23.28 16 8 Si 0.90 20.58 29.61 -169.99 -5.03 15.55 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.21 4.27 6.12 -5.19 -0.03 4.24 16 13 C 0.07 1.36 6.32 -84.23 -0.53 0.83 16 14 C -0.23 -4.13 11.11 29.12 0.32 -3.81 16 15 S 0.08 1.22 23.18 -107.50 -2.49 -1.27 16 16 C 0.00 0.05 6.75 -13.46 -0.09 -0.04 16 17 C 0.21 3.04 6.25 -5.19 -0.03 3.01 16 18 N -0.72 -10.36 5.50 -62.43 -0.34 -10.71 16 19 C 0.56 8.40 7.77 -12.33 -0.10 8.31 16 20 O -0.54 -9.36 16.35 5.32 0.09 -9.28 16 21 C -0.13 -1.76 5.87 -104.96 -0.62 -2.37 16 22 C -0.08 -0.97 9.54 -39.18 -0.37 -1.35 16 23 C -0.13 -1.32 10.03 -39.64 -0.40 -1.72 16 24 C -0.10 -0.89 10.04 -39.49 -0.40 -1.28 16 25 C -0.13 -1.25 10.03 -39.64 -0.40 -1.65 16 26 C -0.06 -0.71 9.60 -39.19 -0.38 -1.09 16 27 N -0.43 -8.41 10.53 -8.06 -0.08 -8.49 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 2.53 5.32 -51.93 -0.28 2.25 16 32 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.05 1.08 8.07 -51.93 -0.42 0.66 16 35 H 0.06 1.19 8.00 -51.92 -0.42 0.77 16 36 H 0.17 2.86 8.06 -52.49 -0.42 2.44 16 37 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.41 5.90 6.50 -40.82 -0.27 5.64 16 40 H 0.13 1.57 6.41 -52.49 -0.34 1.23 16 41 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 44 H 0.14 1.52 7.65 -52.48 -0.40 1.12 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -30.04 389.55 -10.57 -40.62 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.89 Total: 7.95 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.89 Total: -3.12 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.23 Total: -56.32 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.04 -10.57 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079404089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.568 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds