Wall clock time and date at job start Sat Apr 11 2020 07:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.46778 * 2 1 4 4 C 1.36938 * 120.00278 * 265.77573 * 3 2 1 5 5 H 1.08004 * 120.00124 * 146.20165 * 4 3 2 6 6 C 1.38813 * 119.99869 * 326.20853 * 4 3 2 7 7 N 1.31615 * 119.99737 * 337.69591 * 6 4 3 8 8 Si 1.86799 * 119.99855 * 157.69622 * 6 4 3 9 9 H 1.48501 * 109.47164 * 60.00162 * 8 6 4 10 10 H 1.48497 * 109.46864 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47469 * 299.99760 * 8 6 4 12 12 C 1.46504 * 119.99805 * 85.78144 * 3 2 1 13 13 C 1.50696 * 109.47251 * 89.99908 * 12 3 2 14 14 C 1.33644 * 122.75139 * 94.99701 * 13 12 3 15 15 S 1.76199 * 107.92535 * 179.75934 * 14 13 12 16 16 C 1.70974 * 90.28309 * 0.28302 * 15 14 13 17 17 C 1.50698 * 124.91889 * 179.97438 * 16 15 14 18 18 N 1.46504 * 109.46832 * 269.69534 * 17 16 15 19 19 C 1.34776 * 119.99821 * 179.97438 * 18 17 16 20 20 O 1.21548 * 120.00146 * 0.02562 * 19 18 17 21 21 C 1.47854 * 119.99862 * 180.02562 * 19 18 17 22 22 C 1.39578 * 120.14180 * 359.71878 * 21 19 18 23 23 C 1.37957 * 119.85027 * 180.28133 * 22 21 19 24 24 C 1.38363 * 120.14259 * 359.97438 * 23 22 21 25 25 C 1.38359 * 120.29437 * 0.02562 * 24 23 22 26 26 C 1.37955 * 120.14508 * 359.97438 * 25 24 23 27 27 N 1.29030 * 110.16715 * 359.70988 * 16 15 14 28 28 H 1.08998 * 109.47286 * 299.99575 * 1 2 3 29 29 H 1.08998 * 109.47015 * 60.00401 * 1 2 3 30 30 H 1.09004 * 109.46795 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47286 * 240.00424 * 2 1 3 32 32 H 1.09004 * 109.47670 * 119.99788 * 2 1 3 33 33 H 0.97009 * 119.99558 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47199 * 329.99646 * 12 3 2 35 35 H 1.09011 * 109.46960 * 209.99653 * 12 3 2 36 36 H 1.08002 * 126.03336 * 359.97438 * 14 13 12 37 37 H 1.08997 * 109.47433 * 149.69518 * 17 16 15 38 38 H 1.09000 * 109.46897 * 29.69287 * 17 16 15 39 39 H 0.96999 * 120.00132 * 359.97438 * 18 17 16 40 40 H 1.07995 * 120.07525 * 0.27479 * 22 21 19 41 41 H 1.07994 * 119.92868 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.85147 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.92316 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.07327 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3288 1.9978 -1.1827 5 1 2.1594 3.0580 -1.2998 6 6 2.8612 1.2600 -2.2310 7 7 3.4701 0.1183 -1.9897 8 14 2.7135 1.8875 -3.9843 9 1 3.3860 3.2067 -4.0962 10 1 3.3589 0.9233 -4.9111 11 1 1.2789 2.0315 -4.3393 12 6 2.1743 2.1030 1.2654 13 6 3.5638 1.8782 1.8038 14 6 4.5716 2.7272 1.5811 15 16 6.0035 2.0929 2.3884 16 6 5.1068 0.7449 2.9381 17 6 5.6620 -0.3755 3.7792 18 7 6.1739 -1.4344 2.9056 19 6 6.7217 -2.5434 3.4408 20 8 6.7906 -2.6653 4.6482 21 6 7.2388 -3.6118 2.5592 22 6 7.1558 -3.4776 1.1724 23 6 7.6350 -4.4807 0.3555 24 6 8.1972 -5.6177 0.9082 25 6 8.2825 -5.7570 2.2822 26 6 7.8071 -4.7613 3.1103 27 7 3.8846 0.8286 2.5332 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8425 -0.3971 -2.7223 34 1 1.4422 1.7370 1.9851 35 1 2.0177 3.1686 1.0975 36 1 4.5169 3.6424 1.0103 37 1 4.8731 -0.7783 4.4144 38 1 6.4716 0.0046 4.4022 39 1 6.1185 -1.3373 1.9421 40 1 6.7175 -2.5904 0.7398 41 1 7.5718 -4.3780 -0.7177 42 1 8.5705 -6.4004 0.2643 43 1 8.7221 -6.6472 2.7072 44 1 7.8739 -4.8715 4.1826 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079404089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:21 Heat of formation + Delta-G solvation = 41.235480 kcal Electronic energy + Delta-G solvation = -27032.770720 eV Core-core repulsion = 23269.943299 eV Total energy + Delta-G solvation = -3762.827420 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.35473 -40.69887 -39.25302 -37.64459 -36.18079 -33.64747 -32.89102 -32.05582 -31.87550 -30.64367 -28.57482 -27.88584 -25.42839 -24.87869 -23.76511 -23.26261 -22.07637 -21.57478 -20.61293 -19.49172 -18.80302 -18.07409 -17.51806 -16.99833 -16.78335 -16.44727 -16.16494 -16.10276 -15.68940 -15.54949 -15.49378 -14.85728 -14.77545 -14.60071 -14.32475 -14.10511 -13.98626 -13.73850 -13.66136 -13.34435 -13.21206 -12.70566 -12.64805 -12.63300 -12.54821 -12.29068 -12.04471 -11.97882 -11.72518 -11.47577 -11.25108 -10.62120 -10.48682 -10.39937 -10.24929 -9.97837 -9.92466 -9.63726 -8.64071 -7.82788 -5.39079 -0.24395 -0.18135 0.39058 0.49291 0.83154 1.46978 1.50526 1.55448 1.74677 1.77514 2.26999 2.53185 2.87169 3.00901 3.27211 3.57809 3.79838 3.86217 3.97938 3.99371 4.23100 4.29499 4.41302 4.44292 4.45130 4.51425 4.54057 4.59304 4.82206 4.82948 4.92740 4.99693 5.03548 5.05670 5.10288 5.19264 5.30984 5.33288 5.42465 5.48805 5.50047 5.67795 5.87502 5.92688 6.26922 6.44529 6.92418 6.96524 7.15201 7.83117 8.37508 9.14131 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009436 B = 0.003424 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2966.694628 B = 8175.131581 C = 9643.240607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 N -0.580 5.580 4 C -0.265 4.265 5 H 0.065 0.935 6 C -0.030 4.030 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.296 1.296 11 H -0.281 1.281 12 C 0.208 3.792 13 C 0.049 3.951 14 C -0.244 4.244 15 S 0.154 5.846 16 C -0.001 4.001 17 C 0.211 3.789 18 N -0.714 5.714 19 C 0.562 3.438 20 O -0.571 6.571 21 C -0.156 4.156 22 C -0.093 4.093 23 C -0.133 4.133 24 C -0.087 4.087 25 C -0.126 4.126 26 C -0.072 4.072 27 N -0.464 5.464 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.015 0.985 33 H 0.250 0.750 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.180 0.820 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.407 0.593 40 H 0.121 0.879 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -5.938 7.043 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 N -0.299 5.299 4 C -0.395 4.395 5 H 0.082 0.918 6 C -0.228 4.228 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.079 3.921 13 C -0.085 4.085 14 C -0.384 4.384 15 S 0.407 5.593 16 C -0.278 4.278 17 C 0.084 3.916 18 N -0.367 5.367 19 C 0.352 3.648 20 O -0.452 6.452 21 C -0.159 4.159 22 C -0.112 4.112 23 C -0.151 4.151 24 C -0.105 4.105 25 C -0.144 4.144 26 C -0.091 4.091 27 N -0.181 5.181 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.198 0.802 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.243 0.757 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.469 -6.187 8.053 14.585 hybrid contribution -1.060 0.600 -1.880 2.240 sum 9.409 -5.587 6.174 12.564 Atomic orbital electron populations 1.22112 0.98216 1.00092 1.00410 1.20815 0.91675 0.85813 0.99998 1.44158 1.72879 1.12129 1.00717 1.19322 1.35548 0.94338 0.90284 0.91773 1.25702 0.96924 0.98162 1.02023 1.70130 1.37147 1.16762 1.31284 0.85569 0.77744 0.77584 0.80892 1.20081 1.22198 1.20767 1.19781 0.87712 0.97130 0.87454 1.21639 1.01607 0.89346 0.95948 1.27075 0.94954 1.07308 1.09064 1.83301 1.14110 1.16668 1.45226 1.26893 0.93010 1.02220 1.05707 1.19645 0.99036 0.83064 0.89807 1.45957 1.61020 1.18633 1.11059 1.18583 0.76845 0.81728 0.87691 1.90725 1.58824 1.79975 1.15680 1.19886 1.05844 0.96537 0.93619 1.21480 0.97652 0.99751 0.92283 1.21448 0.98661 0.93893 1.01074 1.21805 0.95637 0.97418 0.95620 1.21506 0.99876 0.99409 0.93623 1.21420 0.94686 0.91844 1.01171 1.66063 1.17319 1.22907 1.11769 0.93489 0.94308 0.92758 0.91542 0.96612 0.94076 0.92329 0.90804 0.80226 0.89365 0.87636 0.75652 0.86071 0.83769 0.82308 0.82302 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.95 10.24 71.98 0.74 -5.22 16 2 C 0.14 6.80 5.97 86.38 0.52 7.32 16 3 N -0.58 -27.72 2.44 -706.33 -1.72 -29.44 16 4 C -0.26 -13.61 9.49 84.03 0.80 -12.81 16 5 H 0.06 3.23 7.92 -2.91 -0.02 3.20 16 6 C -0.03 -1.58 4.93 84.86 0.42 -1.16 16 7 N -0.91 -50.46 11.32 21.65 0.25 -50.21 16 8 Si 0.95 42.55 29.61 68.60 2.03 44.58 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.21 8.55 6.12 85.63 0.52 9.07 16 13 C 0.05 1.93 6.32 41.52 0.26 2.19 16 14 C -0.24 -8.58 11.11 66.78 0.74 -7.84 16 15 S 0.15 4.48 23.18 -56.49 -1.31 3.17 16 16 C 0.00 -0.02 6.75 88.52 0.60 0.58 16 17 C 0.21 6.09 6.25 85.63 0.54 6.63 16 18 N -0.71 -20.98 5.50 -469.70 -2.58 -23.56 16 19 C 0.56 17.12 7.77 86.79 0.67 17.80 16 20 O -0.57 -20.05 16.35 -3.87 -0.06 -20.11 16 21 C -0.16 -4.11 5.87 -20.09 -0.12 -4.23 16 22 C -0.09 -2.26 9.54 22.53 0.21 -2.04 16 23 C -0.13 -2.61 10.03 22.23 0.22 -2.39 16 24 C -0.09 -1.36 10.04 22.33 0.22 -1.13 16 25 C -0.13 -2.08 10.03 22.23 0.22 -1.86 16 26 C -0.07 -1.63 9.60 22.52 0.22 -1.41 16 27 N -0.46 -18.16 10.53 -179.40 -1.89 -20.05 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.07 3.61 5.32 -2.39 -0.01 3.60 16 32 H 0.02 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.25 13.51 8.31 -92.70 -0.77 12.74 16 34 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 35 H 0.07 2.79 8.00 -2.38 -0.02 2.77 16 36 H 0.18 5.84 8.06 -2.91 -0.02 5.82 16 37 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.41 12.09 6.50 -92.71 -0.60 11.49 16 40 H 0.12 3.05 6.41 -2.91 -0.02 3.03 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.13 2.96 7.65 -2.91 -0.02 2.94 16 Total: -1.00 -65.18 389.55 1.92 -63.26 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.42 Total: 28.87 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.79 Total: 3.50 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -5.95 Total: -123.27 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.06 Total: -20.11 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.31 Total: 3.17 kcal Total: -65.18 1.92 -63.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079404089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.497 kcal (2) G-P(sol) polarization free energy of solvation -65.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds