Wall clock time and date at job start Sat Apr 11 2020 07:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46707 * 2 1 4 4 C 1.46500 * 119.99836 * 269.99703 * 3 2 1 5 5 C 1.52999 * 109.47383 * 270.00349 * 4 3 2 6 6 C 1.52994 * 109.47158 * 180.02562 * 5 4 3 7 7 F 1.39899 * 109.47378 * 59.99873 * 6 5 4 8 8 F 1.39904 * 109.47054 * 180.02562 * 6 5 4 9 9 F 1.39903 * 109.47096 * 299.99631 * 6 5 4 10 10 C 1.34774 * 120.00045 * 89.99957 * 3 2 1 11 11 O 1.21282 * 120.00304 * 179.97438 * 10 3 2 12 12 C 1.50704 * 120.00135 * 359.97438 * 10 3 2 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 3 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08993 * 109.47295 * 299.99936 * 1 2 3 29 29 H 1.08997 * 109.47295 * 60.00253 * 1 2 3 30 30 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46846 * 240.00123 * 2 1 3 32 32 H 1.08997 * 109.47295 * 119.99746 * 2 1 3 33 33 H 1.09006 * 109.46954 * 30.00438 * 4 3 2 34 34 H 1.09003 * 109.47215 * 149.99975 * 4 3 2 35 35 H 1.09006 * 109.46657 * 299.99773 * 5 4 3 36 36 H 1.08996 * 109.46904 * 59.99579 * 5 4 3 37 37 H 1.09002 * 109.46571 * 59.99894 * 12 10 3 38 38 H 1.08992 * 109.46782 * 300.00158 * 12 10 3 39 39 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 40 40 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 41 41 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 42 42 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8315 -1.7105 6 6 3.9626 2.5532 -3.0351 7 9 3.7484 3.9255 -2.8674 8 9 5.2837 2.3329 -3.4393 9 9 3.0888 2.0606 -4.0104 10 6 2.2429 2.0166 1.1672 11 8 2.6475 3.1599 1.1672 12 6 1.9912 1.3064 2.4723 13 6 2.3171 2.2299 3.6177 14 6 3.5963 2.2536 4.1437 15 6 3.8991 3.0992 5.1950 16 6 2.9261 3.9278 5.7190 17 6 1.6397 3.9022 5.1970 18 8 0.6797 4.7111 5.7138 19 6 1.0064 5.4263 6.8091 20 1 2.0177 5.4030 7.1874 21 6 0.0440 6.1918 7.4497 22 7 -1.1879 6.2198 6.9891 23 14 0.4965 7.1821 8.9676 24 1 1.9344 6.9810 9.2793 25 1 0.2425 8.6229 8.7124 26 1 -0.3277 6.7303 10.1173 27 6 1.3384 3.0512 4.1413 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6876 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 4.3882 2.2157 -0.9508 36 1 3.8744 0.7623 -1.8407 37 1 2.6212 0.4187 2.5302 38 1 0.9432 1.0126 2.5298 39 1 4.3601 1.6103 3.7323 40 1 4.8986 3.1151 5.6038 41 1 3.1645 4.5918 6.5368 42 1 -1.8613 6.7550 7.4375 43 1 0.3398 3.0317 3.7307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089785307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:28 Heat of formation + Delta-G solvation = -198.198837 kcal Electronic energy + Delta-G solvation = -29883.552314 eV Core-core repulsion = 25093.439880 eV Total energy + Delta-G solvation = -4790.112434 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.38244 -47.89755 -47.83608 -40.26359 -38.86675 -36.77140 -36.14198 -33.67351 -32.31106 -31.80506 -30.32565 -29.19916 -27.56533 -25.68764 -25.10822 -23.69165 -22.78575 -21.61994 -20.91168 -19.33460 -18.83686 -18.51703 -17.82222 -17.61055 -17.23935 -16.95341 -16.09889 -15.51191 -15.04876 -15.00385 -14.76388 -14.43869 -14.35948 -14.30720 -14.17288 -14.09268 -14.00719 -13.95252 -13.88677 -13.50269 -13.41970 -13.11755 -12.70508 -12.57752 -12.48058 -12.30534 -12.03749 -11.90111 -11.63041 -11.53163 -11.33368 -11.25062 -10.82234 -10.73680 -10.59095 -10.40330 -9.79429 -9.30218 -9.02077 -8.80752 -8.04118 -7.18655 -6.40942 -3.99813 2.07052 2.35391 2.42779 2.62898 2.84874 3.15060 3.16165 3.21821 3.58570 3.71557 3.74498 3.99761 4.33148 4.53374 4.55434 4.58979 4.80629 4.88173 4.89339 5.00220 5.03880 5.13460 5.21531 5.30848 5.40353 5.46036 5.49125 5.54271 5.66277 5.76272 5.92214 5.95180 6.19869 6.23227 6.36633 6.68155 6.94374 7.10775 7.15329 7.28785 7.40073 7.47535 7.85709 8.04336 8.15335 9.05051 9.76017 10.77460 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.002241 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.580177 B =12489.393055 C =12850.471495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 N -0.620 5.620 4 C 0.115 3.885 5 C -0.184 4.184 6 C 0.457 3.543 7 F -0.178 7.178 8 F -0.185 7.185 9 F -0.186 7.186 10 C 0.515 3.485 11 O -0.510 6.510 12 C -0.091 4.091 13 C -0.035 4.035 14 C -0.197 4.197 15 C -0.074 4.074 16 C -0.230 4.230 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.174 4.174 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.337 -15.343 -17.594 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.020 4.020 3 N -0.356 5.356 4 C -0.009 4.009 5 C -0.224 4.224 6 C 0.402 3.598 7 F -0.160 7.160 8 F -0.166 7.166 9 F -0.167 7.167 10 C 0.304 3.696 11 O -0.383 6.383 12 C -0.131 4.131 13 C -0.036 4.036 14 C -0.216 4.216 15 C -0.093 4.093 16 C -0.249 4.249 17 C 0.102 3.898 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.100 -14.523 -17.600 23.897 hybrid contribution 0.341 0.557 0.452 0.794 sum 7.440 -13.967 -17.148 23.334 Atomic orbital electron populations 1.22248 0.95511 1.02559 1.03096 1.21636 0.94879 0.81953 1.03484 1.48009 1.67674 1.14704 1.05170 1.21272 0.92647 1.00605 0.86365 1.23305 1.02762 1.03015 0.93327 1.20447 0.73887 0.78055 0.87396 1.93229 1.94456 1.32763 1.95542 1.93195 1.36792 1.94542 1.92115 1.93181 1.69621 1.87544 1.66362 1.20903 0.76874 0.86860 0.84973 1.90779 1.43262 1.17359 1.86884 1.20646 1.03914 0.98325 0.90198 1.18667 0.93736 0.96482 0.94704 1.20330 0.95526 1.04575 1.01131 1.20674 0.97805 0.95143 0.95655 1.21181 0.93632 1.04853 1.05283 1.19274 0.88665 0.89500 0.92400 1.83976 1.34930 1.48656 1.40790 1.21365 0.97245 1.24736 1.03288 0.89074 1.25274 0.94648 0.97622 0.99012 1.70047 1.01788 1.38641 1.39479 0.85657 0.78790 0.79084 0.79943 1.19122 1.20180 1.20179 1.19933 0.99422 0.99979 0.99972 0.91769 0.92227 0.91250 0.90328 0.89689 0.89363 0.88375 0.86672 0.87251 0.88369 0.88170 0.88015 0.87492 0.85615 0.92150 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 10.24 37.16 0.38 -0.69 16 2 C 0.10 0.61 5.93 -4.04 -0.02 0.58 16 3 N -0.62 -5.85 2.47 -173.68 -0.43 -6.28 16 4 C 0.11 1.01 5.16 -4.04 -0.02 0.99 16 5 C -0.18 -1.41 5.58 -26.73 -0.15 -1.56 16 6 C 0.46 4.07 3.16 37.15 0.12 4.18 16 7 F -0.18 -1.98 16.80 2.25 0.04 -1.94 16 8 F -0.18 -1.78 17.32 2.25 0.04 -1.74 16 9 F -0.19 -1.62 16.80 2.25 0.04 -1.58 16 10 C 0.52 7.01 7.67 -10.98 -0.08 6.93 16 11 O -0.51 -9.44 15.61 5.56 0.09 -9.36 16 12 C -0.09 -1.15 4.38 -29.03 -0.13 -1.28 16 13 C -0.04 -0.63 4.37 -104.65 -0.46 -1.09 16 14 C -0.20 -3.49 9.70 -39.53 -0.38 -3.87 16 15 C -0.07 -1.42 10.04 -39.61 -0.40 -1.82 16 16 C -0.23 -5.19 9.17 -39.40 -0.36 -5.55 16 17 C 0.15 3.87 6.65 -39.11 -0.26 3.61 16 18 O -0.18 -5.26 9.76 0.05 0.00 -5.26 16 19 C -0.39 -11.13 9.49 30.89 0.29 -10.83 16 20 H 0.09 2.42 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.72 13.67 55.48 0.76 -24.96 16 23 Si 0.94 20.87 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 C -0.17 -3.77 9.65 -39.39 -0.38 -4.15 16 28 H 0.06 0.49 7.22 -51.93 -0.37 0.12 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 32 H 0.08 0.42 6.44 -51.93 -0.33 0.08 16 33 H 0.09 0.59 7.73 -51.93 -0.40 0.19 16 34 H 0.10 1.11 7.08 -51.93 -0.37 0.75 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.93 7.34 -51.93 -0.38 0.55 16 38 H 0.10 1.10 7.13 -51.93 -0.37 0.73 16 39 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 41 H 0.13 2.83 5.64 -52.48 -0.30 2.53 16 42 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -34.68 376.89 -6.08 -40.76 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.31 Total: 2.41 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.95 Total: -13.58 kcal Atomic # 7 Polarization: -31.57 SS G_CDS: 0.33 Total: -31.24 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.11 Total: -5.26 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.68 -6.08 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089785307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.444 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds