Wall clock time and date at job start Sat Apr 11 2020 07:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.46707 * 2 1 4 4 C 1.46500 * 119.99836 * 269.99703 * 3 2 1 5 5 C 1.52999 * 109.47383 * 270.00349 * 4 3 2 6 6 C 1.52994 * 109.47158 * 180.02562 * 5 4 3 7 7 F 1.39899 * 109.47378 * 59.99873 * 6 5 4 8 8 F 1.39904 * 109.47054 * 180.02562 * 6 5 4 9 9 F 1.39903 * 109.47096 * 299.99631 * 6 5 4 10 10 C 1.34774 * 120.00045 * 89.99957 * 3 2 1 11 11 O 1.21282 * 120.00304 * 179.97438 * 10 3 2 12 12 C 1.50704 * 120.00135 * 359.97438 * 10 3 2 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 3 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47010 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46908 * 119.99967 * 23 21 19 26 26 H 1.48504 * 109.47373 * 240.00300 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08993 * 109.47295 * 299.99936 * 1 2 3 29 29 H 1.08997 * 109.47295 * 60.00253 * 1 2 3 30 30 H 1.09002 * 109.46988 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46846 * 240.00123 * 2 1 3 32 32 H 1.08997 * 109.47295 * 119.99746 * 2 1 3 33 33 H 1.09006 * 109.46954 * 30.00438 * 4 3 2 34 34 H 1.09003 * 109.47215 * 149.99975 * 4 3 2 35 35 H 1.09006 * 109.46657 * 299.99773 * 5 4 3 36 36 H 1.08996 * 109.46904 * 59.99579 * 5 4 3 37 37 H 1.09002 * 109.46571 * 59.99894 * 12 10 3 38 38 H 1.08992 * 109.46782 * 300.00158 * 12 10 3 39 39 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 40 40 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 41 41 H 1.08006 * 120.03715 * 180.31908 * 16 15 14 42 42 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 43 43 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8315 -1.7105 6 6 3.9626 2.5532 -3.0351 7 9 3.7484 3.9255 -2.8674 8 9 5.2837 2.3329 -3.4393 9 9 3.0888 2.0606 -4.0104 10 6 2.2429 2.0166 1.1672 11 8 2.6475 3.1599 1.1672 12 6 1.9912 1.3064 2.4723 13 6 2.3171 2.2299 3.6177 14 6 3.5963 2.2536 4.1437 15 6 3.8991 3.0992 5.1950 16 6 2.9261 3.9278 5.7190 17 6 1.6397 3.9022 5.1970 18 8 0.6797 4.7111 5.7138 19 6 1.0064 5.4263 6.8091 20 1 2.0177 5.4030 7.1874 21 6 0.0440 6.1918 7.4497 22 7 -1.1879 6.2198 6.9891 23 14 0.4965 7.1821 8.9676 24 1 1.9344 6.9810 9.2793 25 1 0.2425 8.6229 8.7124 26 1 -0.3277 6.7303 10.1173 27 6 1.3384 3.0512 4.1413 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5816 1.6876 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 4.3882 2.2157 -0.9508 36 1 3.8744 0.7623 -1.8407 37 1 2.6212 0.4187 2.5302 38 1 0.9432 1.0126 2.5298 39 1 4.3601 1.6103 3.7323 40 1 4.8986 3.1151 5.6038 41 1 3.1645 4.5918 6.5368 42 1 -1.8613 6.7550 7.4375 43 1 0.3398 3.0317 3.7307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089785307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:27 Heat of formation + Delta-G solvation = -219.471358 kcal Electronic energy + Delta-G solvation = -29884.474760 eV Core-core repulsion = 25093.439880 eV Total energy + Delta-G solvation = -4791.034880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.12276 -48.63160 -48.60266 -41.33930 -40.52556 -38.31655 -37.24050 -34.50420 -34.24756 -33.11746 -31.01338 -30.84303 -28.84290 -27.34004 -26.36580 -24.31246 -23.62497 -23.21890 -22.44572 -20.31176 -19.57345 -19.44289 -19.27867 -18.73478 -18.51997 -18.11256 -17.02748 -16.76679 -16.61237 -16.08453 -15.95379 -15.79457 -15.51526 -15.47942 -15.07060 -15.04772 -14.86246 -14.78386 -14.76276 -14.69530 -14.48338 -14.37477 -13.97944 -13.90927 -13.57381 -13.26714 -13.04918 -12.98267 -12.83025 -12.65060 -12.45899 -12.40148 -12.24680 -12.15617 -12.09465 -11.86970 -11.19825 -10.91498 -10.79392 -9.82475 -9.62896 -8.97051 -8.47305 -6.15707 0.52276 0.76633 1.33754 1.42447 1.52517 1.56881 1.65354 2.06760 2.17433 2.81890 2.91317 3.00711 3.06151 3.16862 3.44384 3.64929 3.84650 3.88709 4.04246 4.10579 4.13852 4.30661 4.31245 4.36665 4.47969 4.57116 4.60650 4.62968 4.67472 4.74508 4.82034 4.91601 5.03658 5.08963 5.13450 5.31196 5.44627 5.54541 5.65896 5.73567 5.76054 6.03139 6.22201 6.34917 6.97504 7.17994 7.79455 8.76598 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015625 B = 0.002241 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.580177 B =12489.393055 C =12850.471495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.096 3.904 3 N -0.607 5.607 4 C 0.111 3.889 5 C -0.172 4.172 6 C 0.457 3.543 7 F -0.196 7.196 8 F -0.188 7.188 9 F -0.183 7.183 10 C 0.514 3.486 11 O -0.573 6.573 12 C -0.089 4.089 13 C -0.026 4.026 14 C -0.179 4.179 15 C -0.074 4.074 16 C -0.247 4.247 17 C 0.112 3.888 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.265 1.265 27 C -0.193 4.193 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.117 0.883 39 H 0.149 0.851 40 H 0.145 0.855 41 H 0.116 0.884 42 H 0.272 0.728 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 -18.695 -18.577 28.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.025 4.025 3 N -0.340 5.340 4 C -0.012 4.012 5 C -0.211 4.211 6 C 0.402 3.598 7 F -0.178 7.178 8 F -0.170 7.170 9 F -0.164 7.164 10 C 0.303 3.697 11 O -0.451 6.451 12 C -0.128 4.128 13 C -0.027 4.027 14 C -0.197 4.197 15 C -0.092 4.092 16 C -0.267 4.267 17 C 0.062 3.938 18 O -0.143 6.143 19 C -0.489 4.489 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.190 1.190 27 C -0.212 4.212 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.135 0.865 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.134 0.866 42 H 0.081 0.919 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.475 -17.962 -18.639 27.565 hybrid contribution -0.260 1.328 0.470 1.432 sum 9.216 -16.635 -18.169 26.301 Atomic orbital electron populations 1.22255 0.95850 1.03552 1.01831 1.22021 0.94553 0.79791 1.06136 1.48008 1.65982 1.15913 1.04088 1.21328 0.94254 0.98988 0.86661 1.23227 1.01284 1.04735 0.91878 1.20646 0.73714 0.77356 0.88044 1.93200 1.94553 1.34386 1.95657 1.93188 1.37104 1.94473 1.92217 1.93185 1.69486 1.87354 1.66401 1.21017 0.76268 0.86113 0.86280 1.90772 1.46585 1.19913 1.87804 1.20765 1.06148 0.98339 0.87556 1.19219 0.92923 0.95365 0.95186 1.20974 0.96166 1.03278 0.99272 1.21136 0.98552 0.93890 0.95597 1.21296 0.93692 1.06025 1.05662 1.19882 0.89362 0.90609 0.93978 1.83935 1.37129 1.51031 1.42157 1.21857 0.98010 1.25270 1.03759 0.88275 1.26607 0.94344 0.98650 1.02556 1.70193 1.03297 1.40732 1.41880 0.84519 0.79274 0.77103 0.75210 1.17525 1.19435 1.19027 1.20208 1.00441 1.00788 0.99760 0.93829 0.92800 0.89127 0.87069 0.87706 0.86776 0.91726 0.87957 0.83762 0.83566 0.86482 0.83292 0.83729 0.86602 0.91864 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 10.24 71.98 0.74 -0.85 16 2 C 0.10 0.67 5.93 86.38 0.51 1.18 16 3 N -0.61 -9.63 2.47 -821.79 -2.03 -11.66 16 4 C 0.11 1.74 5.16 86.38 0.45 2.19 16 5 C -0.17 -2.17 5.58 30.59 0.17 -2.00 16 6 C 0.46 7.42 3.16 71.98 0.23 7.65 16 7 F -0.20 -4.35 16.80 44.97 0.76 -3.59 16 8 F -0.19 -3.30 17.32 44.97 0.78 -2.52 16 9 F -0.18 -2.81 16.80 44.97 0.76 -2.05 16 10 C 0.51 12.92 7.67 87.66 0.67 13.60 16 11 O -0.57 -21.16 15.61 -3.04 -0.05 -21.21 16 12 C -0.09 -1.95 4.38 29.10 0.13 -1.82 16 13 C -0.03 -0.90 4.37 -19.88 -0.09 -0.98 16 14 C -0.18 -5.69 9.70 22.30 0.22 -5.48 16 15 C -0.07 -2.66 10.04 22.25 0.22 -2.44 16 16 C -0.25 -11.44 9.17 22.39 0.21 -11.24 16 17 C 0.11 5.89 6.65 22.58 0.15 6.04 16 18 O -0.24 -14.88 9.76 -22.74 -0.22 -15.10 16 19 C -0.41 -25.05 9.49 67.92 0.64 -24.40 16 20 H 0.10 5.56 5.21 -2.91 -0.02 5.55 16 21 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 22 N -0.92 -58.26 13.67 21.61 0.30 -57.96 16 23 Si 1.02 44.25 29.55 68.60 2.03 46.28 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 27 C -0.19 -8.67 9.65 22.39 0.22 -8.46 16 28 H 0.04 0.58 7.22 -2.39 -0.02 0.56 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.17 8.07 -2.39 -0.02 0.15 16 32 H 0.10 0.39 6.44 -2.39 -0.02 0.37 16 33 H 0.11 1.19 7.73 -2.38 -0.02 1.17 16 34 H 0.06 1.49 7.08 -2.39 -0.02 1.47 16 35 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.15 1.83 7.34 -2.39 -0.02 1.81 16 38 H 0.12 2.23 7.13 -2.39 -0.02 2.22 16 39 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 41 H 0.12 5.45 5.64 -2.91 -0.02 5.43 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 43 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -85.12 376.89 8.29 -76.83 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 1.05 Total: 18.98 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.93 Total: -28.00 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.74 Total: -69.62 kcal Atomic # 8 Polarization: -36.04 SS G_CDS: -0.27 Total: -36.31 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 2.29 Total: -8.17 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -85.12 8.29 -76.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089785307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.637 kcal (2) G-P(sol) polarization free energy of solvation -85.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds