Wall clock time and date at job start Sat Apr 11 2020 07:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46832 * 2 1 4 4 C 1.50701 * 109.46695 * 240.00422 * 2 1 3 5 5 H 1.07999 * 119.99953 * 239.99495 * 4 2 1 6 6 C 1.37878 * 120.00142 * 60.00157 * 4 2 1 7 7 N 1.31507 * 119.99967 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99965 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46994 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47025 * 119.99612 * 8 6 4 11 11 H 1.48494 * 109.46952 * 240.00108 * 8 6 4 12 12 N 1.46492 * 109.47038 * 120.00274 * 2 1 3 13 13 C 1.46503 * 120.00064 * 60.00465 * 12 2 1 14 14 C 1.34775 * 120.00036 * 239.99617 * 12 2 1 15 15 O 1.21557 * 119.99910 * 2.93465 * 14 12 2 16 16 C 1.47854 * 120.00148 * 182.93420 * 14 12 2 17 17 C 1.41521 * 119.90502 * 173.53936 * 16 14 12 18 18 C 1.36405 * 118.24106 * 179.71973 * 17 16 14 19 19 C 1.41161 * 117.94237 * 0.02562 * 18 17 16 20 20 O 1.21987 * 120.21373 * 179.97438 * 19 18 17 21 21 N 1.34607 * 119.57276 * 359.97438 * 19 18 17 22 22 C 1.39879 * 119.09722 * 179.97438 * 21 19 18 23 23 C 1.38924 * 120.05213 * 310.84656 * 22 21 19 24 24 C 1.38065 * 119.95031 * 179.76779 * 23 22 21 25 25 C 1.38508 * 120.04922 * 0.51554 * 24 23 22 26 26 F 1.35106 * 119.95119 * 179.76101 * 25 24 23 27 27 C 1.38515 * 120.10217 * 359.74046 * 25 24 23 28 28 C 1.38061 * 120.04790 * 359.97438 * 27 25 24 29 29 N 1.28389 * 121.80076 * 359.97438 * 21 19 18 30 30 H 1.09000 * 109.47305 * 59.99643 * 1 2 3 31 31 H 1.09006 * 109.47034 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47139 * 299.99372 * 1 2 3 33 33 H 0.97002 * 120.00439 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.46627 * 263.96264 * 13 12 2 35 35 H 1.08995 * 109.47384 * 23.96148 * 13 12 2 36 36 H 1.09005 * 109.47097 * 143.96927 * 13 12 2 37 37 H 1.08006 * 120.87899 * 359.70164 * 17 16 14 38 38 H 1.07998 * 121.02440 * 180.02562 * 18 17 16 39 39 H 1.07998 * 120.02396 * 0.02562 * 23 22 21 40 40 H 1.08003 * 119.97319 * 180.23128 * 24 23 22 41 41 H 1.07998 * 119.97766 * 179.97438 * 27 25 24 42 42 H 1.07999 * 120.02600 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 3.1482 -2.2854 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1855 -4.8161 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4278 14 6 2.7932 -0.0357 2.0832 15 8 3.0430 1.1425 1.9186 16 6 3.3395 -0.7503 3.2567 17 6 4.2616 -0.1011 4.1118 18 6 4.7396 -0.7900 5.1877 19 6 4.2841 -2.1119 5.3822 20 8 4.6849 -2.7660 6.3307 21 7 3.4047 -2.6460 4.5143 22 6 2.9604 -3.9569 4.7163 23 6 3.8771 -4.9733 4.9540 24 6 3.4359 -6.2656 5.1578 25 6 2.0812 -6.5509 5.1148 26 9 1.6520 -7.8171 5.3097 27 6 1.1657 -5.5401 4.8726 28 6 1.6019 -4.2453 4.6741 29 7 2.9625 -1.9851 3.5063 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.7081 1.1611 -3.4843 34 1 0.7989 -2.1452 2.0883 35 1 1.4251 -2.5695 0.4771 36 1 2.5061 -2.6086 1.8907 37 1 4.5788 0.9129 3.9174 38 1 5.4446 -0.3381 5.8696 39 1 4.9337 -4.7521 4.9835 40 1 4.1480 -7.0555 5.3464 41 1 0.1099 -5.7649 4.8391 42 1 0.8878 -3.4574 4.4857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:26:33 Heat of formation + Delta-G solvation = -3.195518 kcal Electronic energy + Delta-G solvation = -29966.864146 eV Core-core repulsion = 25635.896877 eV Total energy + Delta-G solvation = -4330.967269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.99638 -43.72413 -40.95118 -39.82854 -39.00106 -37.31619 -35.90229 -34.88486 -32.96740 -32.37785 -31.42083 -30.45664 -27.91649 -27.28601 -26.83865 -25.85657 -24.32360 -23.74319 -23.02251 -21.12660 -19.92767 -19.20858 -18.74276 -18.48175 -18.20364 -17.88169 -17.52281 -17.29800 -16.84943 -16.66514 -16.26309 -16.14382 -15.57738 -15.23753 -14.99416 -14.77014 -14.59406 -14.47592 -14.33004 -14.20627 -14.07540 -13.90270 -13.59886 -13.49473 -13.34932 -12.98760 -12.71524 -12.67119 -12.31154 -12.21097 -12.15274 -12.10185 -11.79320 -11.30301 -11.12823 -10.70647 -10.50135 -10.27853 -10.26556 -9.48593 -9.35669 -8.13523 -6.29168 -0.91418 -0.16122 -0.00738 0.07654 0.81399 1.43024 1.45521 1.55644 1.67529 2.06983 2.23720 2.42761 2.45238 2.86654 3.10151 3.15559 3.46785 3.49239 3.60284 3.65769 3.70450 3.97879 4.12790 4.16453 4.41008 4.57300 4.72653 4.75307 4.78998 4.80822 4.81823 4.90074 4.94370 4.94634 4.99296 5.06890 5.10561 5.21460 5.48371 5.56128 5.66195 5.67548 6.01143 6.16399 6.23999 6.63445 6.71928 6.77384 7.15143 7.42666 8.91152 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011218 B = 0.003346 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.285222 B = 8365.361551 C = 9931.061903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.261 3.739 3 H 0.021 0.979 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.961 3.039 9 H -0.267 1.267 10 H -0.276 1.276 11 H -0.285 1.285 12 N -0.573 5.573 13 C 0.082 3.918 14 C 0.564 3.436 15 O -0.575 6.575 16 C 0.033 3.967 17 C -0.026 4.026 18 C -0.174 4.174 19 C 0.473 3.527 20 O -0.541 6.541 21 N -0.294 5.294 22 C 0.083 3.917 23 C -0.064 4.064 24 C -0.138 4.138 25 C 0.107 3.893 26 F -0.136 7.136 27 C -0.135 4.135 28 C -0.067 4.067 29 N -0.174 5.174 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.179 0.821 38 H 0.202 0.798 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -12.538 16.353 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.039 0.961 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.191 1.191 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.302 5.302 13 C -0.061 4.061 14 C 0.349 3.651 15 O -0.454 6.454 16 C -0.138 4.138 17 C -0.049 4.049 18 C -0.203 4.203 19 C 0.274 3.726 20 O -0.420 6.420 21 N -0.109 5.109 22 C -0.006 4.006 23 C -0.084 4.084 24 C -0.157 4.157 25 C 0.087 3.913 26 F -0.115 7.115 27 C -0.154 4.154 28 C -0.086 4.086 29 N -0.003 5.003 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.197 0.803 38 H 0.219 0.781 39 H 0.156 0.844 40 H 0.185 0.815 41 H 0.188 0.812 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.609 -12.901 16.368 21.004 hybrid contribution 0.657 0.358 -0.732 1.047 sum 3.266 -12.543 15.636 20.310 Atomic orbital electron populations 1.21885 0.96755 1.00256 1.00246 1.18707 0.91920 0.92545 0.80830 0.96096 1.21561 1.32023 1.13117 0.90982 0.92137 1.25637 0.95015 0.95561 1.01740 1.70005 1.37099 1.23732 1.24437 0.85463 0.78205 0.78516 0.79166 1.19141 1.20125 1.21095 1.48198 1.46718 1.13525 1.21737 1.22276 1.01733 0.80294 1.01800 1.17675 0.79585 0.85921 0.81922 1.90761 1.62010 1.16334 1.76344 1.21874 1.02060 0.90452 0.99378 1.22385 0.90002 1.02333 0.90190 1.22892 1.04485 0.92058 1.00856 1.18533 0.80596 0.90169 0.83276 1.90967 1.57451 1.63523 1.30089 1.44241 1.35442 1.12337 1.18889 1.17881 0.94432 0.80763 1.07536 1.20941 0.99954 0.90834 0.96701 1.21192 0.94729 0.97283 1.02498 1.17944 0.93084 0.79469 1.00767 1.91531 1.90473 1.37110 1.92339 1.21267 1.01756 0.90758 1.01645 1.21079 0.93003 0.97829 0.96726 1.72032 1.17526 1.07382 1.03319 0.91120 0.93515 0.95795 0.92563 0.91434 0.91284 0.88637 0.80349 0.78096 0.84401 0.81548 0.81150 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.97 71.98 0.65 -5.46 16 2 C 0.26 12.92 2.63 44.25 0.12 13.04 16 3 H 0.02 1.23 6.90 -2.39 -0.02 1.21 16 4 C -0.54 -28.07 7.95 25.60 0.20 -27.87 16 5 H 0.06 3.09 7.44 -2.91 -0.02 3.07 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -50.64 11.32 21.45 0.24 -50.40 16 8 Si 0.96 41.72 29.54 68.60 2.03 43.75 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 12 N -0.57 -23.32 2.75 -830.19 -2.29 -25.60 16 13 C 0.08 2.62 8.31 127.77 1.06 3.68 16 14 C 0.56 22.00 7.65 86.79 0.66 22.66 16 15 O -0.58 -26.30 15.73 -3.90 -0.06 -26.36 16 16 C 0.03 0.97 6.72 42.55 0.29 1.26 16 17 C -0.03 -0.60 9.67 22.65 0.22 -0.38 16 18 C -0.17 -3.51 10.11 22.56 0.23 -3.29 16 19 C 0.47 11.91 7.22 84.99 0.61 12.53 16 20 O -0.54 -15.66 15.60 -5.27 -0.08 -15.74 16 21 N -0.29 -7.27 3.35 -311.84 -1.04 -8.31 16 22 C 0.08 1.82 5.56 38.19 0.21 2.03 16 23 C -0.06 -1.28 8.66 22.39 0.19 -1.09 16 24 C -0.14 -2.23 10.02 22.29 0.22 -2.01 16 25 C 0.11 1.77 7.30 22.40 0.16 1.93 16 26 F -0.14 -2.36 17.27 44.97 0.78 -1.58 16 27 C -0.14 -2.05 10.02 22.29 0.22 -1.82 16 28 C -0.07 -1.21 9.65 22.40 0.22 -1.00 16 29 N -0.17 -4.64 6.26 -48.21 -0.30 -4.94 16 30 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 31 H 0.05 1.95 7.67 -2.38 -0.02 1.93 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.36 7.12 -2.39 -0.02 2.34 16 36 H 0.10 2.81 5.18 -5.20 -0.03 2.78 16 37 H 0.18 3.68 7.73 -2.91 -0.02 3.65 16 38 H 0.20 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.14 2.78 7.38 -2.91 -0.02 2.76 16 40 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 41 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -66.52 361.21 6.05 -60.47 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.06 Total: 12.96 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 5.72 Total: 15.75 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -3.39 Total: -89.25 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.14 Total: -42.10 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.78 Total: -1.58 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -66.52 6.05 -60.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.273 kcal (2) G-P(sol) polarization free energy of solvation -66.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds