Wall clock time and date at job start Sat Apr 11 2020 07:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00214 * 2 1 4 4 C 1.50697 * 109.46731 * 66.04751 * 3 2 1 5 5 H 1.08002 * 120.00699 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00002 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99711 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00295 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47049 * 89.99901 * 8 6 4 10 10 H 1.48501 * 109.46888 * 209.99859 * 8 6 4 11 11 H 1.48501 * 109.46794 * 329.99969 * 8 6 4 12 12 C 1.46905 * 110.99853 * 236.04931 * 2 1 3 13 13 C 1.50701 * 109.46984 * 293.95176 * 12 2 1 14 14 O 1.21278 * 119.99841 * 0.02562 * 13 12 2 15 15 N 1.34772 * 120.00046 * 179.97438 * 13 12 2 16 16 C 1.46494 * 120.00261 * 179.97438 * 15 13 12 17 17 H 1.09000 * 109.47081 * 35.00406 * 16 15 13 18 18 C 1.50705 * 109.47219 * 275.00171 * 16 15 13 19 19 N 1.29026 * 124.91600 * 314.69379 * 18 16 15 20 20 C 1.31783 * 117.12169 * 179.81172 * 19 18 16 21 21 C 1.33640 * 114.50290 * 0.47745 * 20 19 18 22 22 S 1.70982 * 124.91541 * 134.99943 * 18 16 15 23 23 C 1.50703 * 109.47581 * 155.00102 * 16 15 13 24 24 C 1.38235 * 120.00292 * 220.00303 * 23 16 15 25 25 C 1.38230 * 119.99899 * 179.97438 * 24 23 16 26 26 C 1.38235 * 120.00326 * 359.95697 * 25 24 23 27 27 C 1.38234 * 119.99814 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99503 * 39.97596 * 23 16 15 29 29 H 1.08997 * 109.47036 * 183.95424 * 1 2 3 30 30 H 1.08998 * 109.47061 * 303.94944 * 1 2 3 31 31 H 1.09001 * 109.47009 * 63.95305 * 1 2 3 32 32 H 1.08998 * 109.47246 * 186.04512 * 3 2 1 33 33 H 1.09004 * 109.46834 * 306.04849 * 3 2 1 34 34 H 0.97009 * 119.99681 * 179.97438 * 7 6 4 35 35 H 1.08999 * 109.46935 * 173.95755 * 12 2 1 36 36 H 1.08990 * 109.47100 * 53.95304 * 12 2 1 37 37 H 0.97006 * 120.00033 * 0.02562 * 15 13 12 38 38 H 1.07995 * 122.74642 * 180.22329 * 20 19 18 39 39 H 1.07998 * 126.03719 * 179.79105 * 21 20 19 40 40 H 1.08001 * 119.99730 * 359.97438 * 24 23 16 41 41 H 1.08000 * 120.00376 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.00616 * 179.72578 * 26 25 24 43 43 H 1.08001 * 120.00299 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.00455 * 0.02562 * 28 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0268 3.3494 1.5286 7 7 2.7120 4.0018 0.6150 8 14 1.5819 4.1871 3.1378 9 1 2.6585 3.9510 4.1330 10 1 1.4294 5.6467 2.9104 11 1 0.3040 3.6296 3.6492 12 6 1.9954 -0.7659 -1.1377 13 6 1.6369 -2.2204 -0.9730 14 8 1.0047 -2.5831 -0.0036 15 7 2.0179 -3.1179 -1.9034 16 6 1.6699 -4.5319 -1.7430 17 1 0.6902 -4.6138 -1.2724 18 6 2.7014 -5.2080 -0.8769 19 7 3.9777 -5.0642 -0.9996 20 6 4.7410 -5.7273 -0.1544 21 6 4.0716 -6.4795 0.7242 22 16 2.3498 -6.2824 0.4059 23 6 1.6350 -5.1971 -3.0948 24 6 0.6494 -6.1219 -3.3848 25 6 0.6171 -6.7317 -4.6249 26 6 1.5700 -6.4161 -5.5754 27 6 2.5548 -5.4903 -5.2859 28 6 2.5884 -4.8821 -4.0449 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5739 0.8525 31 1 -0.3633 0.4513 -0.9233 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.9860 4.9182 0.7768 35 1 3.0797 -0.6611 -1.1757 36 1 1.5611 -0.3872 -2.0628 37 1 2.5233 -2.8278 -2.6789 38 1 5.8193 -5.6707 -0.1730 39 1 4.5087 -7.0985 1.4937 40 1 -0.0955 -6.3680 -2.6425 41 1 -0.1527 -7.4546 -4.8514 42 1 1.5475 -6.8958 -6.5427 43 1 3.2995 -5.2440 -6.0282 44 1 3.3585 -4.1596 -3.8183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177191964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:14 Heat of formation + Delta-G solvation = 54.021530 kcal Electronic energy + Delta-G solvation = -27016.696440 eV Core-core repulsion = 23254.423464 eV Total energy + Delta-G solvation = -3762.272976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55892 -39.27498 -39.07660 -36.17745 -35.09344 -32.49283 -31.92390 -31.16409 -30.31670 -28.46640 -27.16642 -26.62294 -24.46485 -23.84161 -23.01364 -21.76520 -20.97311 -20.05912 -19.53564 -18.34337 -17.66040 -16.65704 -16.27889 -16.03641 -15.84460 -15.37476 -15.11865 -14.75604 -14.59572 -14.42538 -14.13620 -13.89595 -13.76183 -13.64957 -13.49541 -13.22648 -12.83166 -12.59643 -12.36353 -11.81047 -11.63540 -11.51891 -11.40400 -11.31751 -11.01113 -10.83325 -10.65515 -10.50629 -9.96032 -9.90180 -9.60992 -9.46859 -9.28527 -9.21567 -9.07979 -9.00669 -8.94628 -8.40783 -7.20643 -6.00562 -4.00929 0.54010 0.97092 1.10314 1.24943 1.63554 2.71137 2.92769 3.19906 3.35491 3.40846 3.45685 3.49498 4.02363 4.32377 4.46215 4.54571 4.70191 4.82826 4.88403 4.99334 5.05090 5.09643 5.16839 5.21188 5.34746 5.35811 5.43438 5.60733 5.72052 5.77523 5.85202 6.01073 6.12318 6.16246 6.20624 6.32670 6.40730 6.47244 6.65540 6.93871 7.25537 7.32790 7.53102 7.63058 7.83367 8.07950 8.21133 8.46230 8.57376 9.07051 9.62993 11.10567 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.002628 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.324483 B =10650.886809 C =11717.341323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.523 5.523 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.040 3.960 13 C 0.519 3.481 14 O -0.514 6.514 15 N -0.721 5.721 16 C 0.271 3.729 17 H 0.114 0.886 18 C 0.043 3.957 19 N -0.460 5.460 20 C 0.040 3.960 21 C -0.263 4.263 22 S 0.139 5.861 23 C -0.091 4.091 24 C -0.103 4.103 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.093 4.093 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.005 0.995 32 H 0.030 0.970 33 H -0.007 1.007 34 H 0.261 0.739 35 H 0.098 0.902 36 H 0.053 0.947 37 H 0.403 0.597 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.132 -25.667 -11.668 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.248 5.248 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.092 4.092 13 C 0.306 3.694 14 O -0.387 6.387 15 N -0.376 5.376 16 C 0.162 3.838 17 H 0.131 0.869 18 C -0.237 4.237 19 N -0.174 5.174 20 C -0.112 4.112 21 C -0.403 4.403 22 S 0.393 5.607 23 C -0.093 4.093 24 C -0.122 4.122 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.112 4.112 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.023 0.977 32 H 0.048 0.952 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.239 0.761 38 H 0.192 0.808 39 H 0.194 0.806 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.083 -25.980 -10.490 28.039 hybrid contribution 1.058 1.108 -0.193 1.544 sum -0.025 -24.873 -10.683 27.070 Atomic orbital electron populations 1.22364 0.88039 1.01135 0.99978 1.61855 1.07832 1.17283 1.37795 1.19788 0.95354 0.81070 0.96949 1.21156 1.34675 0.96829 1.01614 0.91699 1.24982 0.95332 0.97295 0.97045 1.69961 1.38571 1.11460 1.34052 0.86477 0.78939 0.78312 0.83578 1.20626 1.21339 1.19801 1.21923 1.02114 0.89856 0.95339 1.21120 0.78234 0.88370 0.81661 1.90645 1.38351 1.80526 1.29210 1.46068 1.59385 1.05304 1.26841 1.18017 0.94674 0.80695 0.90437 0.86876 1.27415 0.95121 1.01292 0.99847 1.66121 1.02854 1.22346 1.26099 1.21801 1.01414 0.95446 0.92528 1.27101 0.95713 1.09699 1.07782 1.83994 1.06814 1.40781 1.29068 1.19632 0.96864 0.98658 0.94116 1.21011 0.97743 0.96103 0.97308 1.21112 0.99147 1.00060 0.93433 1.21223 0.94981 0.97721 0.99381 1.21166 0.98775 0.96993 0.96730 1.21003 0.97669 0.99470 0.93026 0.91752 0.90744 0.97687 0.95191 0.98951 0.92957 0.88382 0.92913 0.76071 0.80807 0.80626 0.85647 0.85733 0.85968 0.85735 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.03 60.06 0.54 1.26 16 2 N -0.52 -12.02 4.49 -245.83 -1.10 -13.12 16 3 C 0.19 5.13 4.72 -4.98 -0.02 5.11 16 4 C -0.50 -14.58 8.46 -34.44 -0.29 -14.87 16 5 H 0.06 1.89 7.12 -52.49 -0.37 1.51 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 13 C 0.52 8.77 7.51 -10.99 -0.08 8.69 16 14 O -0.51 -10.31 13.97 5.56 0.08 -10.23 16 15 N -0.72 -9.34 4.98 -56.07 -0.28 -9.62 16 16 C 0.27 3.24 2.67 -70.23 -0.19 3.05 16 17 H 0.11 1.40 7.44 -51.93 -0.39 1.01 16 18 C 0.04 0.54 6.18 -13.45 -0.08 0.46 16 19 N -0.46 -6.07 10.51 -11.86 -0.12 -6.19 16 20 C 0.04 0.45 11.35 -19.18 -0.22 0.23 16 21 C -0.26 -2.67 11.37 29.12 0.33 -2.34 16 22 S 0.14 1.55 23.18 -107.50 -2.49 -0.94 16 23 C -0.09 -0.91 4.94 -104.62 -0.52 -1.43 16 24 C -0.10 -0.90 9.67 -39.59 -0.38 -1.28 16 25 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 26 C -0.11 -0.85 10.05 -39.58 -0.40 -1.25 16 27 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 28 C -0.09 -0.87 9.05 -39.58 -0.36 -1.23 16 29 H 0.06 1.32 5.88 -51.93 -0.31 1.02 16 30 H 0.07 1.70 6.76 -51.93 -0.35 1.35 16 31 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 33 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.10 1.70 7.93 -51.93 -0.41 1.29 16 36 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 37 H 0.40 4.35 6.87 -40.82 -0.28 4.07 16 38 H 0.17 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 0.90 8.04 -52.49 -0.42 0.48 16 41 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 1.16 6.92 -52.49 -0.36 0.79 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -34.68 385.13 -10.81 -45.49 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.82 Total: 2.04 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -2.59 Total: -4.09 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.77 Total: -55.19 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.49 Total: -0.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.68 -10.81 -45.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177191964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.515 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds