Wall clock time and date at job start Sat Apr 11 2020 07:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47242 * 2 1 4 4 C 1.50702 * 109.46976 * 119.99456 * 2 1 3 5 5 H 1.07993 * 120.00434 * 119.99893 * 4 2 1 6 6 C 1.37882 * 119.99755 * 300.00051 * 4 2 1 7 7 N 1.31515 * 120.00398 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99741 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47642 * 59.99836 * 8 6 4 10 10 H 1.48500 * 109.47038 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47365 * 299.99653 * 8 6 4 12 12 N 1.46492 * 109.47290 * 239.99285 * 2 1 3 13 13 C 1.46499 * 120.00186 * 303.77987 * 12 2 1 14 14 C 1.34777 * 119.99893 * 123.77909 * 12 2 1 15 15 O 1.21283 * 120.00126 * 185.01913 * 14 12 2 16 16 C 1.50694 * 120.00275 * 5.02248 * 14 12 2 17 17 H 1.09005 * 109.47023 * 309.54328 * 16 14 12 18 18 O 1.42903 * 109.47482 * 189.54573 * 16 14 12 19 19 C 1.53000 * 109.47289 * 69.53781 * 16 14 12 20 20 C 1.50699 * 109.46937 * 184.38186 * 19 16 14 21 21 C 1.38261 * 119.99949 * 90.00338 * 20 19 16 22 22 C 1.38212 * 119.99877 * 179.71683 * 21 20 19 23 23 C 1.38261 * 120.00215 * 0.25834 * 22 21 20 24 24 C 1.38214 * 119.99737 * 0.02562 * 23 22 21 25 25 C 1.50703 * 119.99910 * 179.97438 * 24 23 22 26 26 F 1.39899 * 109.46903 * 359.97438 * 25 24 23 27 27 F 1.39901 * 109.47113 * 120.00140 * 25 24 23 28 28 F 1.39900 * 109.47171 * 239.99899 * 25 24 23 29 29 C 1.38221 * 120.00256 * 270.23313 * 20 19 16 30 30 H 1.08992 * 109.46941 * 60.01025 * 1 2 3 31 31 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46867 * 300.00644 * 1 2 3 33 33 H 0.96996 * 120.00343 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47449 * 264.84087 * 13 12 2 35 35 H 1.08999 * 109.47304 * 24.83648 * 13 12 2 36 36 H 1.09001 * 109.47588 * 144.84311 * 13 12 2 37 37 H 0.96702 * 113.99563 * 299.99482 * 18 16 14 38 38 H 1.09000 * 109.46523 * 64.38587 * 19 16 14 39 39 H 1.08994 * 109.47451 * 304.38057 * 19 16 14 40 40 H 1.07998 * 119.99850 * 359.97438 * 21 20 19 41 41 H 1.07994 * 120.00068 * 180.27543 * 22 21 20 42 42 H 1.08001 * 120.00290 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99376 * 0.02731 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3224 -1.1191 4.0081 9 1 3.8074 -1.1186 4.0080 10 1 1.8268 -0.4194 5.2205 11 1 1.8279 -2.5194 4.0085 12 7 2.0184 -0.6907 -1.1960 13 6 1.5975 -2.0669 -1.4703 14 6 2.8549 -0.0601 -2.0440 15 8 3.1871 -0.5971 -3.0795 16 6 3.3775 1.3122 -1.7056 17 1 2.5451 1.9609 -1.4326 18 8 4.0539 1.8575 -2.8402 19 6 4.3521 1.2114 -0.5305 20 6 4.7918 2.5939 -0.1227 21 6 4.0761 3.2937 0.8311 22 6 4.4828 4.5593 1.2094 23 6 5.6022 5.1277 0.6303 24 6 6.3143 4.4304 -0.3274 25 6 7.5342 5.0502 -0.9590 26 9 7.7430 6.3236 -0.4188 27 9 8.6505 4.2462 -0.7045 28 9 7.3411 5.1561 -2.3406 29 6 5.9079 3.1642 -0.7054 30 1 -0.3633 0.5136 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.7080 1.1612 3.4843 34 1 2.3461 -2.7594 -1.0853 35 1 0.6412 -2.2583 -0.9836 36 1 1.4922 -2.2071 -2.5461 37 1 4.8078 1.3309 -3.1392 38 1 5.2221 0.6268 -0.8294 39 1 3.8583 0.7244 0.3103 40 1 3.2017 2.8497 1.2834 41 1 3.9263 5.1042 1.9576 42 1 5.9198 6.1168 0.9256 43 1 6.4645 2.6191 -1.4534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189133431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:20 Heat of formation + Delta-G solvation = -216.136951 kcal Electronic energy + Delta-G solvation = -31467.862085 eV Core-core repulsion = 26676.971796 eV Total energy + Delta-G solvation = -4790.890289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.17215 -47.70651 -47.61747 -40.00736 -39.06931 -36.42938 -35.67494 -33.00628 -32.79578 -31.62512 -29.42270 -29.27770 -26.42094 -25.97963 -25.48973 -23.83821 -22.29165 -21.57348 -20.95493 -18.96667 -18.48982 -18.36802 -18.01721 -17.00887 -16.89004 -16.13495 -15.93506 -15.42316 -15.09044 -14.62502 -14.58451 -14.50064 -14.38317 -14.18600 -14.08418 -13.85500 -13.84210 -13.79784 -13.54261 -13.05073 -12.91017 -12.63634 -12.49788 -12.27341 -11.88056 -11.71446 -11.45120 -11.44084 -11.25976 -11.10718 -11.05905 -10.89933 -10.82105 -10.50007 -10.33582 -10.29276 -9.53222 -9.11835 -9.02051 -8.71012 -8.59873 -7.80258 -6.33904 -4.43774 1.05027 1.33528 2.66380 3.10914 3.13225 3.19461 3.23248 3.58840 3.72742 3.79557 4.02496 4.18669 4.43633 4.58792 4.83211 4.88417 4.97206 5.08415 5.23522 5.30374 5.37220 5.44330 5.48487 5.75719 5.91298 5.98832 6.06901 6.13291 6.20353 6.30618 6.37874 6.44606 6.47774 6.60962 6.69911 6.76198 6.90769 7.03199 7.21415 7.49838 7.69895 7.79217 7.94107 8.25566 8.58557 8.80422 9.25722 10.69573 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.003832 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.798414 B = 7305.789129 C = 8818.288476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.250 3.750 3 H 0.054 0.946 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.072 3.928 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.587 5.587 13 C 0.094 3.906 14 C 0.481 3.519 15 O -0.568 6.568 16 C 0.103 3.897 17 H 0.123 0.877 18 O -0.541 6.541 19 C -0.122 4.122 20 C -0.066 4.066 21 C -0.073 4.073 22 C -0.120 4.120 23 C -0.083 4.083 24 C -0.191 4.191 25 C 0.509 3.491 26 F -0.181 7.181 27 F -0.180 7.180 28 F -0.177 7.177 29 C -0.057 4.057 30 H 0.014 0.986 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.267 0.733 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.376 0.624 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.148 0.852 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.137 6.835 -2.133 10.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.149 3.851 3 H 0.071 0.929 4 C -0.571 4.571 5 H 0.081 0.919 6 C -0.131 4.131 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.318 5.318 13 C -0.049 4.049 14 C 0.268 3.732 15 O -0.450 6.450 16 C 0.041 3.959 17 H 0.140 0.860 18 O -0.346 6.346 19 C -0.159 4.159 20 C -0.066 4.066 21 C -0.091 4.091 22 C -0.138 4.138 23 C -0.101 4.101 24 C -0.192 4.192 25 C 0.455 3.545 26 F -0.162 7.162 27 F -0.161 7.161 28 F -0.158 7.158 29 C -0.076 4.076 30 H 0.033 0.967 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.224 0.776 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.166 0.834 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.781 7.159 -2.463 10.164 hybrid contribution 0.821 -0.836 0.894 1.474 sum 7.602 6.322 -1.569 10.012 Atomic orbital electron populations 1.22157 0.97831 1.00173 1.01114 1.19182 0.91782 0.93132 0.80957 0.92871 1.21284 1.32373 1.13512 0.89890 0.91937 1.24852 0.94536 0.94857 0.98888 1.69828 1.35595 1.22433 1.24337 0.86607 0.79369 0.79937 0.81934 1.20061 1.21084 1.20146 1.48300 1.44792 1.14132 1.24627 1.21399 1.00218 0.83024 1.00242 1.21326 0.79775 0.88398 0.83661 1.90612 1.60558 1.68195 1.25591 1.21779 0.95504 0.92956 0.85660 0.85964 1.86581 1.48435 1.51730 1.47805 1.21510 1.00111 0.93565 1.00739 1.19707 0.94484 0.96359 0.96026 1.21664 0.99116 0.93772 0.94516 1.21160 0.96470 0.95817 1.00384 1.20930 0.94875 0.99616 0.94663 1.19835 0.97639 0.98025 1.03684 1.18363 0.83778 0.75893 0.76439 1.93142 1.95573 1.41626 1.85907 1.93205 1.55576 1.73408 1.93916 1.93220 1.95172 1.95974 1.31479 1.20716 0.96215 0.92930 0.97703 0.96704 0.94547 0.88461 0.92305 0.93533 0.90894 0.92484 0.77619 0.90552 0.85327 0.83447 0.84911 0.85013 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.89 37.16 0.33 -2.84 16 2 C 0.25 5.14 1.77 -69.08 -0.12 5.02 16 3 H 0.05 1.11 4.90 -51.93 -0.25 0.85 16 4 C -0.53 -11.92 7.23 -34.44 -0.25 -12.17 16 5 H 0.06 1.45 7.76 -52.49 -0.41 1.04 16 6 C 0.07 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.88 -20.59 11.32 55.43 0.63 -19.96 16 8 Si 0.89 18.54 29.54 -169.99 -5.02 13.52 16 9 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 10 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 N -0.59 -11.47 2.75 -175.27 -0.48 -11.95 16 13 C 0.09 1.69 9.80 59.85 0.59 2.28 16 14 C 0.48 9.37 7.01 -10.99 -0.08 9.29 16 15 O -0.57 -12.27 15.94 -14.17 -0.23 -12.50 16 16 C 0.10 1.74 2.52 -27.89 -0.07 1.67 16 17 H 0.12 2.12 6.95 -51.93 -0.36 1.76 16 18 O -0.54 -8.82 12.49 -54.96 -0.69 -9.51 16 19 C -0.12 -1.91 4.67 -27.88 -0.13 -2.04 16 20 C -0.07 -0.97 4.96 -104.62 -0.52 -1.49 16 21 C -0.07 -1.06 9.70 -39.58 -0.38 -1.44 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.08 -1.01 9.43 -39.58 -0.37 -1.38 16 24 C -0.19 -2.50 5.37 -104.62 -0.56 -3.07 16 25 C 0.51 6.41 3.32 36.01 0.12 6.53 16 26 F -0.18 -2.19 15.97 2.25 0.04 -2.15 16 27 F -0.18 -2.31 17.24 2.25 0.04 -2.27 16 28 F -0.18 -2.34 17.24 2.25 0.04 -2.30 16 29 C -0.06 -0.79 8.93 -39.58 -0.35 -1.14 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.72 6.53 -51.93 -0.34 0.38 16 32 H 0.10 2.17 6.07 -51.93 -0.32 1.86 16 33 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.25 6.24 -51.93 -0.32 0.93 16 36 H 0.06 1.00 7.52 -51.93 -0.39 0.61 16 37 H 0.38 5.22 8.74 45.56 0.40 5.62 16 38 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 39 H 0.13 2.31 5.25 -51.93 -0.27 2.04 16 40 H 0.15 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.13 1.34 7.16 -52.49 -0.38 0.96 16 43 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -25.55 366.70 -6.75 -32.30 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -4.31 Total: 10.42 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.30 Total: -1.12 kcal Atomic # 7 Polarization: -32.06 SS G_CDS: 0.15 Total: -31.91 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.91 Total: -22.01 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.11 Total: -6.72 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -25.55 -6.75 -32.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189133431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.835 kcal (2) G-P(sol) polarization free energy of solvation -25.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds