Wall clock time and date at job start Sat Apr 11 2020 07:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47242 * 2 1 4 4 C 1.50702 * 109.46976 * 119.99456 * 2 1 3 5 5 H 1.07993 * 120.00434 * 119.99893 * 4 2 1 6 6 C 1.37882 * 119.99755 * 300.00051 * 4 2 1 7 7 N 1.31515 * 120.00398 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99741 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47642 * 59.99836 * 8 6 4 10 10 H 1.48500 * 109.47038 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47365 * 299.99653 * 8 6 4 12 12 N 1.46492 * 109.47290 * 239.99285 * 2 1 3 13 13 C 1.46499 * 120.00186 * 303.77987 * 12 2 1 14 14 C 1.34777 * 119.99893 * 123.77909 * 12 2 1 15 15 O 1.21283 * 120.00126 * 185.01913 * 14 12 2 16 16 C 1.50694 * 120.00275 * 5.02248 * 14 12 2 17 17 H 1.09005 * 109.47023 * 309.54328 * 16 14 12 18 18 O 1.42903 * 109.47482 * 189.54573 * 16 14 12 19 19 C 1.53000 * 109.47289 * 69.53781 * 16 14 12 20 20 C 1.50699 * 109.46937 * 184.38186 * 19 16 14 21 21 C 1.38261 * 119.99949 * 90.00338 * 20 19 16 22 22 C 1.38212 * 119.99877 * 179.71683 * 21 20 19 23 23 C 1.38261 * 120.00215 * 0.25834 * 22 21 20 24 24 C 1.38214 * 119.99737 * 0.02562 * 23 22 21 25 25 C 1.50703 * 119.99910 * 179.97438 * 24 23 22 26 26 F 1.39899 * 109.46903 * 359.97438 * 25 24 23 27 27 F 1.39901 * 109.47113 * 120.00140 * 25 24 23 28 28 F 1.39900 * 109.47171 * 239.99899 * 25 24 23 29 29 C 1.38221 * 120.00256 * 270.23313 * 20 19 16 30 30 H 1.08992 * 109.46941 * 60.01025 * 1 2 3 31 31 H 1.09001 * 109.46902 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46867 * 300.00644 * 1 2 3 33 33 H 0.96996 * 120.00343 * 179.97438 * 7 6 4 34 34 H 1.09004 * 109.47449 * 264.84087 * 13 12 2 35 35 H 1.08999 * 109.47304 * 24.83648 * 13 12 2 36 36 H 1.09001 * 109.47588 * 144.84311 * 13 12 2 37 37 H 0.96702 * 113.99563 * 299.99482 * 18 16 14 38 38 H 1.09000 * 109.46523 * 64.38587 * 19 16 14 39 39 H 1.08994 * 109.47451 * 304.38057 * 19 16 14 40 40 H 1.07998 * 119.99850 * 359.97438 * 21 20 19 41 41 H 1.07994 * 120.00068 * 180.27543 * 22 21 20 42 42 H 1.08001 * 120.00290 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99376 * 0.02731 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6992 -0.2391 2.4828 7 7 0.9427 0.8299 2.6034 8 14 2.3224 -1.1191 4.0081 9 1 3.8074 -1.1186 4.0080 10 1 1.8268 -0.4194 5.2205 11 1 1.8279 -2.5194 4.0085 12 7 2.0184 -0.6907 -1.1960 13 6 1.5975 -2.0669 -1.4703 14 6 2.8549 -0.0601 -2.0440 15 8 3.1871 -0.5971 -3.0795 16 6 3.3775 1.3122 -1.7056 17 1 2.5451 1.9609 -1.4326 18 8 4.0539 1.8575 -2.8402 19 6 4.3521 1.2114 -0.5305 20 6 4.7918 2.5939 -0.1227 21 6 4.0761 3.2937 0.8311 22 6 4.4828 4.5593 1.2094 23 6 5.6022 5.1277 0.6303 24 6 6.3143 4.4304 -0.3274 25 6 7.5342 5.0502 -0.9590 26 9 7.7430 6.3236 -0.4188 27 9 8.6505 4.2462 -0.7045 28 9 7.3411 5.1561 -2.3406 29 6 5.9079 3.1642 -0.7054 30 1 -0.3633 0.5136 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.7080 1.1612 3.4843 34 1 2.3461 -2.7594 -1.0853 35 1 0.6412 -2.2583 -0.9836 36 1 1.4922 -2.2071 -2.5461 37 1 4.8078 1.3309 -3.1392 38 1 5.2221 0.6268 -0.8294 39 1 3.8583 0.7244 0.3103 40 1 3.2017 2.8497 1.2834 41 1 3.9263 5.1042 1.9576 42 1 5.9198 6.1168 0.9256 43 1 6.4645 2.6191 -1.4534 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189133431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:19 Heat of formation + Delta-G solvation = -227.894560 kcal Electronic energy + Delta-G solvation = -31468.371933 eV Core-core repulsion = 26676.971796 eV Total energy + Delta-G solvation = -4791.400137 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.16605 -48.68553 -48.62707 -41.39851 -40.27646 -37.84082 -37.25056 -34.55107 -34.13586 -32.67002 -30.99297 -30.65680 -27.80051 -27.24238 -26.99838 -25.17920 -23.32987 -23.16387 -22.09344 -20.44764 -19.48668 -19.36218 -19.09819 -18.55610 -18.49052 -17.43923 -17.18696 -16.84453 -16.41323 -16.13469 -15.99417 -15.54431 -15.47333 -15.31143 -15.14444 -15.07540 -15.00525 -14.84396 -14.79364 -14.58542 -14.17225 -13.80091 -13.74852 -13.53307 -13.47195 -13.20911 -12.94913 -12.83138 -12.79205 -12.61776 -12.45899 -12.27538 -12.14882 -12.04366 -11.92540 -11.77166 -11.19744 -10.57498 -10.43682 -10.12255 -9.75469 -9.41393 -8.09758 -6.22878 -0.00935 0.29395 1.46518 1.51173 1.53831 1.60071 1.66311 2.25198 2.47121 2.55091 2.72323 3.02957 3.17595 3.32111 3.43499 3.55776 3.84992 3.88625 4.02113 4.04915 4.18707 4.34260 4.43039 4.49961 4.62392 4.66779 4.73703 4.87319 4.88713 4.96010 4.97943 5.04747 5.15412 5.18252 5.37626 5.40470 5.57543 5.60154 5.75597 5.84601 5.98069 6.21983 6.55021 6.65946 6.85250 7.22068 7.48512 8.92403 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.003832 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.798414 B = 7305.789129 C = 8818.288476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.051 0.949 4 C -0.534 4.534 5 H 0.052 0.948 6 C 0.044 3.956 7 N -0.898 5.898 8 Si 0.938 3.062 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.590 5.590 13 C 0.093 3.907 14 C 0.478 3.522 15 O -0.591 6.591 16 C 0.115 3.885 17 H 0.117 0.883 18 O -0.544 6.544 19 C -0.110 4.110 20 C -0.077 4.077 21 C -0.086 4.086 22 C -0.117 4.117 23 C -0.077 4.077 24 C -0.196 4.196 25 C 0.515 3.485 26 F -0.176 7.176 27 F -0.181 7.181 28 F -0.181 7.181 29 C -0.062 4.062 30 H 0.024 0.976 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.267 0.733 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.387 0.613 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.129 0.871 41 H 0.155 0.845 42 H 0.156 0.844 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.888 7.681 -1.904 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.070 0.930 6 C -0.158 4.158 7 N -0.536 5.536 8 Si 0.765 3.235 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.205 1.205 12 N -0.321 5.321 13 C -0.050 4.050 14 C 0.266 3.734 15 O -0.474 6.474 16 C 0.052 3.948 17 H 0.135 0.865 18 O -0.350 6.350 19 C -0.147 4.147 20 C -0.077 4.077 21 C -0.104 4.104 22 C -0.135 4.135 23 C -0.095 4.095 24 C -0.197 4.197 25 C 0.461 3.539 26 F -0.157 7.157 27 F -0.162 7.162 28 F -0.162 7.162 29 C -0.080 4.080 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.147 0.853 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.536 7.997 -2.234 11.213 hybrid contribution 0.604 -1.080 0.802 1.475 sum 8.140 6.917 -1.433 10.777 Atomic orbital electron populations 1.22043 0.97679 1.00145 1.00704 1.19027 0.91738 0.92932 0.80766 0.93096 1.21345 1.32088 1.13140 0.90692 0.92957 1.25266 0.94803 0.95334 1.00439 1.69895 1.36136 1.23018 1.24551 0.85923 0.78708 0.78871 0.79960 1.20233 1.21113 1.20536 1.48341 1.44779 1.14691 1.24304 1.21474 1.00601 0.82362 1.00570 1.21775 0.79313 0.89177 0.83162 1.90593 1.61311 1.69057 1.26434 1.21626 0.95680 0.91186 0.86299 0.86547 1.86557 1.48940 1.51909 1.47585 1.21311 0.99803 0.94443 0.99189 1.19604 0.95316 0.95942 0.96865 1.21610 0.98914 0.94855 0.95061 1.21390 0.96601 0.95020 1.00484 1.21224 0.94143 1.00401 0.93707 1.19977 0.97928 0.97931 1.03911 1.18233 0.83497 0.75981 0.76198 1.93151 1.95527 1.41261 1.85801 1.93205 1.55628 1.73507 1.93904 1.93215 1.95184 1.96000 1.31809 1.20809 0.95916 0.93386 0.97873 0.95715 0.94354 0.90164 0.92386 0.93310 0.90229 0.92117 0.76353 0.89628 0.87649 0.85286 0.82695 0.82602 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.99 8.89 71.98 0.64 -5.35 16 2 C 0.26 10.52 1.77 44.25 0.08 10.60 16 3 H 0.05 2.14 4.90 -2.39 -0.01 2.13 16 4 C -0.53 -23.88 7.23 25.60 0.19 -23.69 16 5 H 0.05 2.42 7.76 -2.91 -0.02 2.40 16 6 C 0.04 1.98 5.30 84.66 0.45 2.43 16 7 N -0.90 -41.72 11.32 21.45 0.24 -41.48 16 8 Si 0.94 37.70 29.54 68.60 2.03 39.73 16 9 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16 11 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 12 N -0.59 -22.89 2.75 -826.81 -2.28 -25.16 16 13 C 0.09 3.28 9.80 127.77 1.25 4.53 16 14 C 0.48 18.43 7.01 87.66 0.61 19.04 16 15 O -0.59 -25.22 15.94 15.82 0.25 -24.97 16 16 C 0.11 3.83 2.52 29.85 0.08 3.90 16 17 H 0.12 4.04 6.95 -2.38 -0.02 4.03 16 18 O -0.54 -17.23 12.49 -130.12 -1.62 -18.86 16 19 C -0.11 -3.42 4.67 29.85 0.14 -3.28 16 20 C -0.08 -2.22 4.96 -19.86 -0.10 -2.32 16 21 C -0.09 -2.47 9.70 22.27 0.22 -2.26 16 22 C -0.12 -2.74 10.05 22.27 0.22 -2.51 16 23 C -0.08 -1.69 9.43 22.27 0.21 -1.48 16 24 C -0.20 -4.76 5.37 -19.87 -0.11 -4.87 16 25 C 0.51 11.90 3.32 71.24 0.24 12.14 16 26 F -0.18 -3.82 15.97 44.97 0.72 -3.10 16 27 F -0.18 -4.32 17.24 44.97 0.78 -3.54 16 28 F -0.18 -4.44 17.24 44.97 0.78 -3.67 16 29 C -0.06 -1.61 8.93 22.27 0.20 -1.41 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.04 1.50 6.53 -2.39 -0.02 1.48 16 32 H 0.08 3.57 6.07 -2.39 -0.01 3.56 16 33 H 0.27 12.05 8.31 -92.71 -0.77 11.28 16 34 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 2.67 6.24 -2.39 -0.01 2.66 16 36 H 0.06 2.09 7.52 -2.39 -0.02 2.07 16 37 H 0.39 10.32 8.74 -74.06 -0.65 9.67 16 38 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 39 H 0.11 3.83 5.25 -2.39 -0.01 3.82 16 40 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 41 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 42 H 0.16 2.64 7.16 -2.91 -0.02 2.62 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -52.13 366.70 5.63 -46.50 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.43 Total: 29.07 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.31 Total: 5.47 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -2.03 Total: -66.64 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -1.37 Total: -43.83 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 2.27 Total: -10.31 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -52.13 5.63 -46.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189133431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.393 kcal (2) G-P(sol) polarization free energy of solvation -52.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds