Wall clock time and date at job start Sat Apr 11 2020 07:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 C 1.34776 * 120.00710 * 240.00300 * 12 2 1 15 15 O 1.21283 * 119.99682 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00475 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.46989 * 304.99759 * 16 14 12 18 18 O 1.42900 * 109.47309 * 184.99742 * 16 14 12 19 19 C 1.53001 * 109.47104 * 64.99793 * 16 14 12 20 20 C 1.50700 * 109.47421 * 184.99982 * 19 16 14 21 21 C 1.38252 * 119.99781 * 89.99746 * 20 19 16 22 22 C 1.38213 * 119.99811 * 179.97438 * 21 20 19 23 23 C 1.38260 * 120.00094 * 0.02562 * 22 21 20 24 24 C 1.38211 * 120.00014 * 0.02562 * 23 22 21 25 25 C 1.50697 * 120.00056 * 179.97438 * 24 23 22 26 26 F 1.39898 * 109.47289 * 0.02562 * 25 24 23 27 27 F 1.39898 * 109.47435 * 120.00120 * 25 24 23 28 28 F 1.39902 * 109.47127 * 239.99963 * 25 24 23 29 29 C 1.38219 * 120.00067 * 269.73325 * 20 19 16 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 35 35 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 36 36 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 37 37 H 0.96706 * 114.00004 * 300.00424 * 18 16 14 38 38 H 1.08997 * 109.47008 * 305.00383 * 19 16 14 39 39 H 1.09004 * 109.46702 * 64.99907 * 19 16 14 40 40 H 1.07997 * 120.00412 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.99885 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00076 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.99571 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8913 16 6 3.2959 -0.7461 3.3136 17 1 2.4521 -1.1659 3.8611 18 8 3.9914 0.1817 4.1488 19 6 4.2462 -1.8716 2.8999 20 6 4.6527 -2.6593 4.1186 21 6 3.9042 -3.7511 4.5173 22 6 4.2773 -4.4739 5.6348 23 6 5.3988 -4.1047 6.3541 24 6 6.1465 -3.0126 5.9562 25 6 7.3686 -2.6099 6.7406 26 9 7.5407 -3.4855 7.8179 27 9 8.4940 -2.6646 5.9114 28 9 7.2060 -1.3058 7.2203 29 6 5.7770 -2.2935 4.8346 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 0.7089 1.1612 -3.4844 34 1 2.4157 -2.7377 0.9718 35 1 1.6238 -2.2851 2.5002 36 1 0.6904 -2.3002 0.9847 37 1 4.7563 0.5953 3.7254 38 1 3.7428 -2.5305 2.1926 39 1 5.1327 -1.4445 2.4309 40 1 3.0284 -4.0397 3.9552 41 1 3.6928 -5.3270 5.9460 42 1 5.6906 -4.6698 7.2271 43 1 6.3644 -1.4434 4.5204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189133453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:22 Heat of formation + Delta-G solvation = -211.204392 kcal Electronic energy + Delta-G solvation = -30618.357640 eV Core-core repulsion = 25827.681242 eV Total energy + Delta-G solvation = -4790.676397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.37647 -47.91146 -47.81696 -40.23302 -39.25745 -36.60578 -35.39123 -33.55595 -32.78244 -31.99323 -30.13760 -28.43784 -26.46100 -26.25755 -25.32396 -24.63263 -22.66851 -21.49554 -21.08945 -18.92758 -18.68953 -18.59165 -18.29271 -17.18805 -16.59799 -16.47542 -16.27488 -15.68466 -15.27503 -15.04423 -14.75673 -14.69694 -14.58121 -14.31742 -14.27929 -14.03373 -13.99186 -13.94621 -13.50256 -13.20349 -12.94616 -12.86623 -12.73004 -12.56538 -12.00994 -11.88820 -11.69590 -11.55909 -11.40223 -11.30662 -11.12692 -10.85983 -10.77546 -10.66068 -10.30786 -10.24281 -9.49353 -9.24750 -9.22253 -8.77233 -8.49243 -7.72453 -6.14095 -4.22804 0.65592 0.96296 2.42913 3.05945 3.20807 3.26809 3.29718 3.31626 3.48094 3.74699 3.79884 4.20343 4.27236 4.33178 4.51040 4.52694 4.71567 4.87580 4.90245 4.97522 5.07587 5.12201 5.17797 5.36230 5.46647 5.55416 5.66366 5.79063 5.86152 5.88625 5.97974 6.15457 6.22134 6.47612 6.68375 6.74019 6.97174 7.29870 7.40901 7.61069 7.64070 7.93645 8.10853 8.39672 8.73036 8.89954 9.44122 10.91208 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002483 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.570739 B =11273.089967 C =11407.932194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.587 5.587 13 C 0.081 3.919 14 C 0.474 3.526 15 O -0.543 6.543 16 C 0.099 3.901 17 H 0.118 0.882 18 O -0.538 6.538 19 C -0.121 4.121 20 C -0.068 4.068 21 C -0.085 4.085 22 C -0.119 4.119 23 C -0.080 4.080 24 C -0.183 4.183 25 C 0.508 3.492 26 F -0.180 7.180 27 F -0.178 7.178 28 F -0.175 7.175 29 C -0.054 4.054 30 H 0.030 0.970 31 H 0.094 0.906 32 H 0.012 0.988 33 H 0.263 0.737 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.380 0.620 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.481 -12.455 17.293 22.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.320 5.320 13 C -0.063 4.063 14 C 0.260 3.740 15 O -0.421 6.421 16 C 0.036 3.964 17 H 0.136 0.864 18 O -0.343 6.343 19 C -0.158 4.158 20 C -0.068 4.068 21 C -0.103 4.103 22 C -0.137 4.137 23 C -0.099 4.099 24 C -0.184 4.184 25 C 0.454 3.546 26 F -0.161 7.161 27 F -0.159 7.159 28 F -0.156 7.156 29 C -0.072 4.072 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.229 0.771 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.117 -11.871 17.479 22.296 hybrid contribution 0.865 -0.360 -1.195 1.519 sum 7.982 -12.232 16.284 21.874 Atomic orbital electron populations 1.22104 0.98165 0.99396 1.00980 1.18978 0.90944 0.94553 0.79890 0.91894 1.21321 1.31950 1.13023 0.90213 0.92210 1.24901 0.94906 0.94956 0.99021 1.69882 1.36244 1.22583 1.23752 0.86442 0.78618 0.79573 0.82757 1.19808 1.20916 1.20887 1.48290 1.48677 1.11529 1.23484 1.21730 1.01975 0.83397 0.99213 1.21190 0.80098 0.87738 0.84968 1.90680 1.58355 1.16847 1.76245 1.21824 0.95071 0.88327 0.91171 0.86435 1.86559 1.46967 1.59862 1.40902 1.21496 1.01316 0.97690 0.95333 1.19704 0.94543 0.95694 0.96898 1.21357 0.98962 0.93917 0.96057 1.21127 0.96701 1.00409 0.95446 1.20975 0.94456 0.94844 0.99583 1.19920 0.97372 1.01429 0.99677 1.18328 0.83740 0.74855 0.77655 1.93152 1.95976 1.69412 1.57579 1.93220 1.54748 1.96104 1.71830 1.93238 1.95569 1.37930 1.88860 1.20770 0.96169 0.97739 0.92498 0.95047 0.88726 0.96921 0.92661 0.92809 0.92939 0.90507 0.77109 0.87877 0.89513 0.84791 0.84781 0.84691 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.95 37.16 0.33 -3.07 16 2 C 0.26 6.26 2.64 -69.09 -0.18 6.08 16 3 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -13.59 8.37 -34.44 -0.29 -13.88 16 5 H 0.06 1.51 7.65 -52.49 -0.40 1.10 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.59 -11.49 2.75 -175.26 -0.48 -11.98 16 13 C 0.08 1.17 8.17 59.85 0.49 1.66 16 14 C 0.47 9.10 7.09 -10.99 -0.08 9.02 16 15 O -0.54 -12.84 15.65 -14.30 -0.22 -13.06 16 16 C 0.10 1.37 2.56 -27.88 -0.07 1.30 16 17 H 0.12 1.46 7.13 -51.93 -0.37 1.09 16 18 O -0.54 -7.79 12.50 -55.09 -0.69 -8.48 16 19 C -0.12 -1.35 4.77 -27.88 -0.13 -1.49 16 20 C -0.07 -0.69 4.96 -104.62 -0.52 -1.21 16 21 C -0.08 -0.71 9.70 -39.59 -0.38 -1.10 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 23 C -0.08 -0.68 9.43 -39.58 -0.37 -1.06 16 24 C -0.18 -1.83 5.37 -104.63 -0.56 -2.39 16 25 C 0.51 5.22 3.32 36.00 0.12 5.34 16 26 F -0.18 -1.77 15.97 2.25 0.04 -1.73 16 27 F -0.18 -1.92 17.23 2.25 0.04 -1.88 16 28 F -0.17 -1.97 17.24 2.25 0.04 -1.93 16 29 C -0.05 -0.56 8.97 -39.58 -0.35 -0.91 16 30 H 0.03 0.65 6.66 -51.93 -0.35 0.31 16 31 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.05 0.73 6.95 -51.93 -0.36 0.37 16 35 H 0.05 0.56 6.11 -51.93 -0.32 0.25 16 36 H 0.08 1.15 6.43 -51.93 -0.33 0.82 16 37 H 0.38 4.81 8.79 45.56 0.40 5.21 16 38 H 0.10 1.11 5.01 -51.93 -0.26 0.85 16 39 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.14 0.92 7.16 -52.48 -0.38 0.54 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -31.58 366.72 -6.93 -38.51 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.28 Total: 4.91 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.50 Total: -1.39 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.14 Total: -35.84 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.91 Total: -21.54 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.11 Total: -5.55 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.58 -6.93 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189133453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.692 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds