Wall clock time and date at job start Sat Apr 11 2020 07:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 C 1.34776 * 120.00710 * 240.00300 * 12 2 1 15 15 O 1.21283 * 119.99682 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00475 * 180.02562 * 14 12 2 17 17 H 1.08997 * 109.46989 * 304.99759 * 16 14 12 18 18 O 1.42900 * 109.47309 * 184.99742 * 16 14 12 19 19 C 1.53001 * 109.47104 * 64.99793 * 16 14 12 20 20 C 1.50700 * 109.47421 * 184.99982 * 19 16 14 21 21 C 1.38252 * 119.99781 * 89.99746 * 20 19 16 22 22 C 1.38213 * 119.99811 * 179.97438 * 21 20 19 23 23 C 1.38260 * 120.00094 * 0.02562 * 22 21 20 24 24 C 1.38211 * 120.00014 * 0.02562 * 23 22 21 25 25 C 1.50697 * 120.00056 * 179.97438 * 24 23 22 26 26 F 1.39898 * 109.47289 * 0.02562 * 25 24 23 27 27 F 1.39898 * 109.47435 * 120.00120 * 25 24 23 28 28 F 1.39902 * 109.47127 * 239.99963 * 25 24 23 29 29 C 1.38219 * 120.00067 * 269.73325 * 20 19 16 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 35 35 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 36 36 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 37 37 H 0.96706 * 114.00004 * 300.00424 * 18 16 14 38 38 H 1.08997 * 109.47008 * 305.00383 * 19 16 14 39 39 H 1.09004 * 109.46702 * 64.99907 * 19 16 14 40 40 H 1.07997 * 120.00412 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.99885 * 180.02562 * 22 21 20 42 42 H 1.08005 * 120.00076 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.99571 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8913 16 6 3.2959 -0.7461 3.3136 17 1 2.4521 -1.1659 3.8611 18 8 3.9914 0.1817 4.1488 19 6 4.2462 -1.8716 2.8999 20 6 4.6527 -2.6593 4.1186 21 6 3.9042 -3.7511 4.5173 22 6 4.2773 -4.4739 5.6348 23 6 5.3988 -4.1047 6.3541 24 6 6.1465 -3.0126 5.9562 25 6 7.3686 -2.6099 6.7406 26 9 7.5407 -3.4855 7.8179 27 9 8.4940 -2.6646 5.9114 28 9 7.2060 -1.3058 7.2203 29 6 5.7770 -2.2935 4.8346 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 0.7089 1.1612 -3.4844 34 1 2.4157 -2.7377 0.9718 35 1 1.6238 -2.2851 2.5002 36 1 0.6904 -2.3002 0.9847 37 1 4.7563 0.5953 3.7254 38 1 3.7428 -2.5305 2.1926 39 1 5.1327 -1.4445 2.4309 40 1 3.0284 -4.0397 3.9552 41 1 3.6928 -5.3270 5.9460 42 1 5.6906 -4.6698 7.2271 43 1 6.3644 -1.4434 4.5204 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189133453.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:22 Heat of formation + Delta-G solvation = -230.165127 kcal Electronic energy + Delta-G solvation = -30619.179839 eV Core-core repulsion = 25827.681242 eV Total energy + Delta-G solvation = -4791.498596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.18561 -48.70788 -48.65465 -41.36278 -40.27104 -37.89243 -36.97622 -35.00845 -34.05317 -32.66476 -31.71426 -29.62706 -27.73996 -27.29635 -27.01601 -25.76491 -23.34828 -22.87807 -22.11259 -20.40355 -19.50788 -19.38760 -19.13437 -18.67112 -18.13128 -17.76431 -17.20198 -16.82116 -16.65869 -16.17970 -16.02997 -15.57026 -15.48740 -15.27760 -15.13007 -15.09917 -14.91927 -14.82053 -14.80718 -14.42985 -14.12052 -14.00315 -13.73326 -13.55257 -13.48537 -13.11325 -13.01073 -12.91816 -12.85658 -12.57818 -12.55098 -12.23298 -12.17124 -12.10119 -12.04467 -11.73764 -11.15092 -10.58994 -10.41476 -10.10684 -9.75674 -9.34234 -8.13869 -6.30486 -0.00738 0.29929 1.41794 1.44001 1.54463 1.65451 1.69316 2.26085 2.45515 2.55384 2.72620 3.01197 3.14739 3.24783 3.41188 3.56771 3.83126 3.86519 3.98017 4.02176 4.17022 4.31928 4.38917 4.47681 4.60500 4.69645 4.72435 4.83568 4.88033 4.89781 4.97760 5.06644 5.13494 5.21973 5.37757 5.46954 5.51591 5.61180 5.67453 5.85934 6.02848 6.16409 6.49982 6.78304 6.81841 7.29128 7.45420 8.90658 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002483 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.570739 B =11273.089967 C =11407.932194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.260 3.740 3 H 0.005 0.995 4 C -0.533 4.533 5 H 0.066 0.934 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.964 3.036 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.289 1.289 12 N -0.592 5.592 13 C 0.072 3.928 14 C 0.464 3.536 15 O -0.601 6.601 16 C 0.116 3.884 17 H 0.142 0.858 18 O -0.547 6.547 19 C -0.109 4.109 20 C -0.079 4.079 21 C -0.082 4.082 22 C -0.114 4.114 23 C -0.082 4.082 24 C -0.197 4.197 25 C 0.508 3.492 26 F -0.177 7.177 27 F -0.184 7.184 28 F -0.184 7.184 29 C -0.069 4.069 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.386 0.614 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.161 0.839 41 H 0.166 0.834 42 H 0.151 0.849 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.172 -15.968 18.313 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.157 3.843 3 H 0.023 0.977 4 C -0.572 4.572 5 H 0.085 0.915 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.789 3.211 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.215 1.215 12 N -0.323 5.323 13 C -0.070 4.070 14 C 0.252 3.748 15 O -0.483 6.483 16 C 0.053 3.947 17 H 0.159 0.841 18 O -0.353 6.353 19 C -0.147 4.147 20 C -0.079 4.079 21 C -0.100 4.100 22 C -0.131 4.131 23 C -0.100 4.100 24 C -0.198 4.198 25 C 0.454 3.546 26 F -0.158 7.158 27 F -0.165 7.165 28 F -0.165 7.165 29 C -0.087 4.087 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.235 0.765 38 H 0.132 0.868 39 H 0.096 0.904 40 H 0.179 0.821 41 H 0.184 0.816 42 H 0.168 0.832 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.810 -15.435 18.526 25.057 hybrid contribution 0.983 0.739 -1.440 1.894 sum 7.793 -14.697 17.086 23.846 Atomic orbital electron populations 1.21898 0.97231 1.00349 0.99858 1.18538 0.91601 0.92176 0.81939 0.97712 1.21608 1.31695 1.13020 0.90852 0.91549 1.25747 0.95132 0.95620 1.02119 1.70035 1.37482 1.24064 1.24298 0.85422 0.78157 0.78560 0.78959 1.18449 1.20229 1.21542 1.48256 1.48498 1.13497 1.22036 1.22084 1.02155 0.80264 1.02461 1.22273 0.79094 0.87281 0.86119 1.90647 1.60276 1.19620 1.77779 1.21838 0.96266 0.88205 0.88361 0.84051 1.86533 1.47289 1.60349 1.41113 1.21352 1.00326 0.96817 0.96192 1.19585 0.95103 0.96661 0.96575 1.21702 0.99224 0.92831 0.96203 1.21507 0.96180 1.00836 0.94600 1.21289 0.94448 0.94156 1.00066 1.19966 0.97589 1.02402 0.99852 1.18440 0.83918 0.74516 0.77705 1.93150 1.95991 1.69219 1.57483 1.93204 1.55194 1.96105 1.72015 1.93217 1.95614 1.38706 1.89003 1.20833 0.96770 0.98034 0.93076 0.92882 0.91572 0.96300 0.92759 0.91301 0.88394 0.90829 0.76485 0.86787 0.90404 0.82102 0.81614 0.83168 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.95 71.98 0.64 -5.63 16 2 C 0.26 12.96 2.64 44.24 0.12 13.08 16 3 H 0.00 0.30 6.90 -2.39 -0.02 0.28 16 4 C -0.53 -27.60 8.37 25.60 0.21 -27.39 16 5 H 0.07 3.27 7.65 -2.91 -0.02 3.24 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 8 Si 0.96 41.68 29.54 68.60 2.03 43.70 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 12 N -0.59 -22.75 2.75 -826.79 -2.28 -25.03 16 13 C 0.07 1.86 8.17 127.77 1.04 2.90 16 14 C 0.46 17.80 7.09 87.66 0.62 18.42 16 15 O -0.60 -29.72 15.65 15.95 0.25 -29.47 16 16 C 0.12 3.00 2.56 29.85 0.08 3.08 16 17 H 0.14 2.99 7.13 -2.39 -0.02 2.98 16 18 O -0.55 -15.52 12.50 -129.99 -1.62 -17.14 16 19 C -0.11 -2.20 4.77 29.85 0.14 -2.06 16 20 C -0.08 -1.37 4.96 -19.87 -0.10 -1.47 16 21 C -0.08 -1.01 9.70 22.27 0.22 -0.79 16 22 C -0.11 -1.22 10.05 22.27 0.22 -0.99 16 23 C -0.08 -1.14 9.43 22.27 0.21 -0.93 16 24 C -0.20 -3.61 5.37 -19.87 -0.11 -3.72 16 25 C 0.51 10.04 3.32 71.23 0.24 10.28 16 26 F -0.18 -3.26 15.97 44.97 0.72 -2.54 16 27 F -0.18 -3.91 17.23 44.97 0.77 -3.14 16 28 F -0.18 -4.11 17.24 44.97 0.78 -3.34 16 29 C -0.07 -1.34 8.97 22.27 0.20 -1.14 16 30 H 0.05 2.18 6.66 -2.39 -0.02 2.16 16 31 H 0.07 3.47 6.07 -2.39 -0.01 3.46 16 32 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.07 1.60 6.95 -2.39 -0.02 1.58 16 35 H 0.10 1.62 6.11 -2.39 -0.01 1.61 16 36 H 0.07 1.97 6.43 -2.39 -0.02 1.96 16 37 H 0.39 9.98 8.79 -74.05 -0.65 9.33 16 38 H 0.11 2.04 5.01 -2.39 -0.01 2.02 16 39 H 0.08 1.71 8.08 -2.38 -0.02 1.69 16 40 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 41 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 42 H 0.15 1.56 7.16 -2.91 -0.02 1.54 16 43 H 0.13 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -72.16 366.72 5.50 -66.66 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 0.42 Total: 17.43 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 4.19 Total: 4.79 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.03 Total: -76.96 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -1.38 Total: -46.61 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 2.27 Total: -9.01 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -72.16 5.50 -66.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189133453.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.504 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds