Wall clock time and date at job start Sat Apr 11 2020 07:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47440 * 2 1 4 4 C 1.46499 * 120.00063 * 262.35416 * 3 2 1 5 5 C 1.50695 * 109.47181 * 269.99937 * 4 3 2 6 6 H 1.08001 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00329 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99698 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47312 * 90.00133 * 9 7 5 11 11 H 1.48504 * 109.46790 * 209.99697 * 9 7 5 12 12 H 1.48495 * 109.47400 * 329.99687 * 9 7 5 13 13 C 1.34772 * 119.99826 * 82.34786 * 3 2 1 14 14 O 1.21557 * 119.99824 * 183.21761 * 13 3 2 15 15 C 1.47857 * 120.00286 * 3.22566 * 13 3 2 16 16 C 1.41521 * 119.90571 * 173.59961 * 15 13 3 17 17 C 1.36400 * 118.23664 * 179.97438 * 16 15 13 18 18 C 1.41165 * 117.94883 * 0.02562 * 17 16 15 19 19 O 1.21984 * 120.21516 * 180.02562 * 18 17 16 20 20 N 1.34603 * 119.56467 * 359.97438 * 18 17 16 21 21 C 1.39884 * 119.09585 * 180.02562 * 20 18 17 22 22 C 1.38935 * 120.04983 * 222.99296 * 21 20 18 23 23 C 1.38066 * 119.95154 * 179.76944 * 22 21 20 24 24 C 1.38506 * 120.04918 * 0.49811 * 23 22 21 25 25 F 1.35105 * 119.95242 * 179.76819 * 24 23 22 26 26 C 1.38512 * 120.10065 * 359.75076 * 24 23 22 27 27 C 1.38064 * 120.05146 * 359.97438 * 26 24 23 28 28 N 1.28382 * 121.81016 * 359.97438 * 20 18 17 29 29 H 1.09005 * 109.47079 * 300.00613 * 1 2 3 30 30 H 1.09005 * 109.47356 * 59.99274 * 1 2 3 31 31 H 1.08998 * 109.47867 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46511 * 239.99895 * 2 1 3 33 33 H 1.08993 * 109.47023 * 120.00649 * 2 1 3 34 34 H 1.09000 * 109.47429 * 29.99729 * 4 3 2 35 35 H 1.08997 * 109.47602 * 149.99660 * 4 3 2 36 36 H 0.97002 * 119.99606 * 179.97438 * 8 7 5 37 37 H 1.07996 * 120.87864 * 0.02562 * 16 15 13 38 38 H 1.07997 * 121.02706 * 179.97438 * 17 16 15 39 39 H 1.08000 * 120.02115 * 359.97438 * 22 21 20 40 40 H 1.07998 * 119.97383 * 180.24926 * 23 22 21 41 41 H 1.08005 * 119.98163 * 179.97438 * 26 24 23 42 42 H 1.08004 * 120.02891 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4218 2.0155 -1.2574 5 6 3.8876 1.7636 -1.4996 6 1 4.4616 1.1888 -0.7877 7 6 4.4965 2.2677 -2.6293 8 7 3.7977 2.9680 -3.4958 9 14 6.3137 1.9560 -2.9289 10 1 6.4794 0.6992 -3.7026 11 1 6.8904 3.0892 -3.6962 12 1 7.0160 1.8318 -1.6265 13 6 2.0965 2.0683 1.1568 14 8 2.4460 3.2325 1.1497 15 6 1.7573 1.4060 2.4345 16 6 1.9689 2.0839 3.6586 17 6 1.6435 1.4412 4.8168 18 6 1.1149 0.1356 4.7230 19 8 0.8094 -0.4770 5.7327 20 7 0.9493 -0.4284 3.5121 21 6 0.4242 -1.7224 3.4305 22 6 0.9810 -2.6451 2.5537 23 6 0.4642 -3.9232 2.4783 24 6 -0.6151 -4.2826 3.2684 25 9 -1.1222 -5.5324 3.1896 26 6 -1.1751 -3.3628 4.1396 27 6 -0.6580 -2.0854 4.2225 28 7 1.2591 0.1889 2.4300 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8406 1.5962 -2.0787 35 1 2.2428 3.0890 -1.1967 36 1 4.2262 3.3230 -4.2904 37 1 2.3763 3.0840 3.6751 38 1 1.7866 1.9161 5.7761 39 1 1.8196 -2.3639 1.9340 40 1 0.8993 -4.6420 1.7998 41 1 -2.0170 -3.6450 4.7545 42 1 -1.0947 -1.3686 4.9022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267386611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:31 Heat of formation + Delta-G solvation = 12.511992 kcal Electronic energy + Delta-G solvation = -30225.086921 eV Core-core repulsion = 25894.800780 eV Total energy + Delta-G solvation = -4330.286140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.23709 -42.71905 -39.60360 -38.89432 -37.81986 -35.65019 -34.87682 -32.95317 -31.76852 -31.58437 -30.26521 -29.85439 -27.39204 -25.87651 -24.86849 -23.57849 -23.04892 -22.94091 -22.33207 -19.99618 -18.95913 -17.97737 -17.90462 -17.24823 -16.88722 -16.53179 -16.39357 -16.03409 -15.89379 -15.45759 -14.93623 -14.54248 -14.47790 -14.31361 -14.05421 -13.70878 -13.66682 -13.47374 -13.24695 -13.23007 -13.01682 -12.72917 -12.36516 -12.03886 -11.80263 -11.55175 -11.50218 -11.28565 -10.98226 -10.87185 -10.73044 -10.50965 -10.21781 -9.93822 -9.71427 -9.53641 -9.45975 -9.18793 -8.50585 -8.45430 -7.81866 -6.11911 -4.17385 0.03422 0.76065 0.81474 1.09197 1.82016 2.83860 3.11555 3.25913 3.33108 3.36137 3.51795 3.66649 3.85198 3.95940 4.34892 4.38238 4.40905 4.49863 4.58351 4.68876 4.76175 4.92909 4.97849 5.22906 5.40281 5.46356 5.50502 5.63881 5.65695 5.69239 5.70056 5.72587 5.80836 5.87547 5.92600 6.19604 6.23878 6.41522 6.57892 6.92645 7.27798 7.30894 7.39499 7.75147 7.83766 8.12242 8.19062 8.67970 8.89062 9.47973 10.96149 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.003304 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.266525 B = 8472.077511 C = 9775.992459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.101 3.899 3 N -0.569 5.569 4 C 0.244 3.756 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.569 3.431 14 O -0.527 6.527 15 C 0.041 3.959 16 C -0.024 4.024 17 C -0.195 4.195 18 C 0.481 3.519 19 O -0.523 6.523 20 N -0.300 5.300 21 C 0.112 3.888 22 C -0.069 4.069 23 C -0.141 4.141 24 C 0.108 3.892 25 F -0.135 7.135 26 C -0.143 4.143 27 C -0.059 4.059 28 N -0.179 5.179 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.048 0.952 36 H 0.264 0.736 37 H 0.167 0.833 38 H 0.170 0.830 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.375 -11.326 13.897 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.299 5.299 4 C 0.125 3.875 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.352 3.648 14 O -0.402 6.402 15 C -0.131 4.131 16 C -0.047 4.047 17 C -0.224 4.224 18 C 0.281 3.719 19 O -0.400 6.400 20 N -0.114 5.114 21 C 0.023 3.977 22 C -0.088 4.088 23 C -0.161 4.161 24 C 0.088 3.912 25 F -0.114 7.114 26 C -0.162 4.162 27 C -0.079 4.079 28 N -0.006 5.006 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.164 0.836 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.603 -11.647 13.727 20.404 hybrid contribution 1.168 0.203 0.317 1.227 sum -8.435 -11.444 14.044 19.984 Atomic orbital electron populations 1.22072 0.96488 1.01330 1.01486 1.21891 0.93844 0.83507 1.03091 1.48235 1.59975 1.13365 1.08289 1.19443 0.95304 0.94776 0.77934 1.21395 0.94420 1.34459 1.06657 0.92319 1.24920 0.98416 0.94784 0.95801 1.69926 1.36323 1.35173 1.11662 0.86489 0.84799 0.77801 0.78299 1.20595 1.21040 1.19861 1.17171 0.79772 0.86030 0.81815 1.90811 1.48495 1.15471 1.85410 1.22545 1.02844 0.90272 0.97427 1.22375 0.90771 1.01444 0.90144 1.22627 1.04742 0.93956 1.01082 1.18157 0.81569 0.88965 0.83209 1.90965 1.51662 1.64124 1.33288 1.44144 1.49563 1.13482 1.04220 1.17584 0.96349 0.82295 1.01483 1.20965 0.99456 0.91162 0.97258 1.21025 0.96782 0.97177 1.01081 1.17807 0.94993 0.80221 0.98191 1.91525 1.86271 1.38344 1.95254 1.20996 1.02221 0.92747 1.00268 1.20922 0.92718 0.96627 0.97620 1.72213 1.07621 1.09108 1.11644 0.93255 0.92573 0.92301 0.90071 0.89365 0.94419 0.93394 0.92594 0.81549 0.81214 0.83597 0.83475 0.83719 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.57 37.16 0.36 -1.75 16 2 C 0.10 1.57 5.71 -4.04 -0.02 1.55 16 3 N -0.57 -11.33 2.48 -176.18 -0.44 -11.76 16 4 C 0.24 5.99 5.15 -5.20 -0.03 5.96 16 5 C -0.53 -14.24 9.39 -34.44 -0.32 -14.56 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 9 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.57 11.06 7.58 -12.33 -0.09 10.97 16 14 O -0.53 -11.97 15.96 5.32 0.08 -11.88 16 15 C 0.04 0.62 6.59 -82.82 -0.55 0.07 16 16 C -0.02 -0.30 9.68 -38.99 -0.38 -0.67 16 17 C -0.19 -2.19 10.11 -39.13 -0.40 -2.59 16 18 C 0.48 6.41 7.22 -15.23 -0.11 6.30 16 19 O -0.52 -7.85 15.16 4.93 0.07 -7.78 16 20 N -0.30 -3.86 3.38 -12.56 -0.04 -3.90 16 21 C 0.11 1.30 5.75 -83.67 -0.48 0.82 16 22 C -0.07 -0.69 9.56 -39.39 -0.38 -1.06 16 23 C -0.14 -1.23 10.02 -39.55 -0.40 -1.63 16 24 C 0.11 1.00 7.30 -39.38 -0.29 0.71 16 25 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 26 C -0.14 -1.27 10.02 -39.54 -0.40 -1.67 16 27 C -0.06 -0.62 8.61 -39.39 -0.34 -0.96 16 28 N -0.18 -2.44 4.44 33.41 0.15 -2.29 16 29 H 0.05 0.68 6.71 -51.93 -0.35 0.34 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.29 8.02 -51.93 -0.42 0.87 16 33 H 0.09 1.26 4.23 -52.22 -0.22 1.04 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.32 7.38 -51.93 -0.38 0.94 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.17 1.86 7.73 -52.49 -0.41 1.45 16 38 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.15 1.38 6.95 -52.49 -0.36 1.02 16 40 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.14 1.52 6.94 -52.48 -0.36 1.15 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -31.73 363.15 -7.44 -39.17 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.58 Total: -0.15 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.91 Total: 3.12 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.41 Total: -42.65 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: 0.16 Total: -19.66 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.73 -7.44 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267386611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.677 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds