Wall clock time and date at job start Sat Apr 11 2020 07:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47440 * 2 1 4 4 C 1.46499 * 120.00063 * 262.35416 * 3 2 1 5 5 C 1.50695 * 109.47181 * 269.99937 * 4 3 2 6 6 H 1.08001 * 120.00096 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00329 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99698 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99914 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47312 * 90.00133 * 9 7 5 11 11 H 1.48504 * 109.46790 * 209.99697 * 9 7 5 12 12 H 1.48495 * 109.47400 * 329.99687 * 9 7 5 13 13 C 1.34772 * 119.99826 * 82.34786 * 3 2 1 14 14 O 1.21557 * 119.99824 * 183.21761 * 13 3 2 15 15 C 1.47857 * 120.00286 * 3.22566 * 13 3 2 16 16 C 1.41521 * 119.90571 * 173.59961 * 15 13 3 17 17 C 1.36400 * 118.23664 * 179.97438 * 16 15 13 18 18 C 1.41165 * 117.94883 * 0.02562 * 17 16 15 19 19 O 1.21984 * 120.21516 * 180.02562 * 18 17 16 20 20 N 1.34603 * 119.56467 * 359.97438 * 18 17 16 21 21 C 1.39884 * 119.09585 * 180.02562 * 20 18 17 22 22 C 1.38935 * 120.04983 * 222.99296 * 21 20 18 23 23 C 1.38066 * 119.95154 * 179.76944 * 22 21 20 24 24 C 1.38506 * 120.04918 * 0.49811 * 23 22 21 25 25 F 1.35105 * 119.95242 * 179.76819 * 24 23 22 26 26 C 1.38512 * 120.10065 * 359.75076 * 24 23 22 27 27 C 1.38064 * 120.05146 * 359.97438 * 26 24 23 28 28 N 1.28382 * 121.81016 * 359.97438 * 20 18 17 29 29 H 1.09005 * 109.47079 * 300.00613 * 1 2 3 30 30 H 1.09005 * 109.47356 * 59.99274 * 1 2 3 31 31 H 1.08998 * 109.47867 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46511 * 239.99895 * 2 1 3 33 33 H 1.08993 * 109.47023 * 120.00649 * 2 1 3 34 34 H 1.09000 * 109.47429 * 29.99729 * 4 3 2 35 35 H 1.08997 * 109.47602 * 149.99660 * 4 3 2 36 36 H 0.97002 * 119.99606 * 179.97438 * 8 7 5 37 37 H 1.07996 * 120.87864 * 0.02562 * 16 15 13 38 38 H 1.07997 * 121.02706 * 179.97438 * 17 16 15 39 39 H 1.08000 * 120.02115 * 359.97438 * 22 21 20 40 40 H 1.07998 * 119.97383 * 180.24926 * 23 22 21 41 41 H 1.08005 * 119.98163 * 179.97438 * 26 24 23 42 42 H 1.08004 * 120.02891 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4218 2.0155 -1.2574 5 6 3.8876 1.7636 -1.4996 6 1 4.4616 1.1888 -0.7877 7 6 4.4965 2.2677 -2.6293 8 7 3.7977 2.9680 -3.4958 9 14 6.3137 1.9560 -2.9289 10 1 6.4794 0.6992 -3.7026 11 1 6.8904 3.0892 -3.6962 12 1 7.0160 1.8318 -1.6265 13 6 2.0965 2.0683 1.1568 14 8 2.4460 3.2325 1.1497 15 6 1.7573 1.4060 2.4345 16 6 1.9689 2.0839 3.6586 17 6 1.6435 1.4412 4.8168 18 6 1.1149 0.1356 4.7230 19 8 0.8094 -0.4770 5.7327 20 7 0.9493 -0.4284 3.5121 21 6 0.4242 -1.7224 3.4305 22 6 0.9810 -2.6451 2.5537 23 6 0.4642 -3.9232 2.4783 24 6 -0.6151 -4.2826 3.2684 25 9 -1.1222 -5.5324 3.1896 26 6 -1.1751 -3.3628 4.1396 27 6 -0.6580 -2.0854 4.2225 28 7 1.2591 0.1889 2.4300 29 1 -0.3633 0.5140 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.8406 1.5962 -2.0787 35 1 2.2428 3.0890 -1.1967 36 1 4.2262 3.3230 -4.2904 37 1 2.3763 3.0840 3.6751 38 1 1.7866 1.9161 5.7761 39 1 1.8196 -2.3639 1.9340 40 1 0.8993 -4.6420 1.7998 41 1 -2.0170 -3.6450 4.7545 42 1 -1.0947 -1.3686 4.9022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267386611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:30 Heat of formation + Delta-G solvation = -4.878586 kcal Electronic energy + Delta-G solvation = -30225.841033 eV Core-core repulsion = 25894.800780 eV Total energy + Delta-G solvation = -4331.040252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.97791 -43.76449 -40.95537 -39.81343 -38.99939 -37.17845 -35.92169 -34.91373 -32.88296 -32.35941 -31.66053 -30.84309 -29.13665 -27.05724 -25.93632 -25.03074 -24.35261 -23.92861 -23.35793 -21.32402 -19.95570 -19.17112 -18.73320 -18.57036 -18.20641 -17.96472 -17.59456 -17.19250 -16.84550 -16.64643 -16.26397 -16.13633 -15.55341 -15.48163 -15.10282 -14.77488 -14.56239 -14.44966 -14.37309 -14.33928 -14.18738 -13.98244 -13.59734 -13.53000 -13.23541 -13.07868 -12.86190 -12.57834 -12.49093 -12.32438 -12.15448 -11.89358 -11.73039 -11.65174 -11.22636 -10.75183 -10.60582 -10.26315 -10.21740 -9.56992 -9.33285 -8.20014 -6.34257 -0.93892 -0.14601 0.01567 0.09014 0.80625 1.40927 1.43201 1.53115 1.68478 2.05438 2.28929 2.37126 2.45169 2.83542 3.10764 3.12063 3.44409 3.47223 3.61194 3.64148 3.71596 3.98257 4.15033 4.17064 4.22621 4.42061 4.46989 4.62754 4.73964 4.80254 4.80509 4.89595 4.96290 4.96605 5.01420 5.04470 5.07850 5.12214 5.24830 5.41075 5.57566 5.67978 5.81390 6.06227 6.23255 6.56673 6.70481 6.74037 7.15418 7.37758 8.87279 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.003304 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.266525 B = 8472.077511 C = 9775.992459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.099 3.901 3 N -0.577 5.577 4 C 0.260 3.740 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.272 1.272 13 C 0.567 3.433 14 O -0.569 6.569 15 C 0.030 3.970 16 C -0.027 4.027 17 C -0.174 4.174 18 C 0.473 3.527 19 O -0.540 6.540 20 N -0.292 5.292 21 C 0.086 3.914 22 C -0.071 4.071 23 C -0.133 4.133 24 C 0.106 3.894 25 F -0.137 7.137 26 C -0.137 4.137 27 C -0.064 4.064 28 N -0.168 5.168 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.107 0.893 34 H 0.029 0.971 35 H 0.008 0.992 36 H 0.267 0.733 37 H 0.177 0.823 38 H 0.202 0.798 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.167 0.833 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.265 -13.463 15.168 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 N -0.306 5.306 4 C 0.140 3.860 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.352 3.648 14 O -0.447 6.447 15 C -0.141 4.141 16 C -0.050 4.050 17 C -0.203 4.203 18 C 0.274 3.726 19 O -0.419 6.419 20 N -0.106 5.106 21 C -0.003 4.003 22 C -0.091 4.091 23 C -0.153 4.153 24 C 0.086 3.914 25 F -0.115 7.115 26 C -0.156 4.156 27 C -0.084 4.084 28 N 0.003 4.997 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.047 0.953 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.194 0.806 38 H 0.219 0.781 39 H 0.168 0.832 40 H 0.188 0.812 41 H 0.184 0.816 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.514 -13.823 15.009 22.514 hybrid contribution 1.021 0.736 -0.026 1.259 sum -8.494 -13.087 14.983 21.631 Atomic orbital electron populations 1.21981 0.94707 1.02961 1.00684 1.22126 0.95220 0.81185 1.03787 1.48204 1.60336 1.14925 1.07179 1.18900 0.94487 0.92754 0.79908 1.21671 0.95505 1.34346 1.06681 0.92580 1.25785 1.02929 0.94439 0.95561 1.70041 1.38222 1.36072 1.12188 0.85452 0.79237 0.78134 0.78217 1.19076 1.20806 1.19633 1.17621 0.78681 0.85632 0.82871 1.90772 1.50223 1.17368 1.86365 1.21860 1.04917 0.91185 0.96128 1.22372 0.91467 1.01901 0.89303 1.22884 1.02822 0.92763 1.01859 1.18496 0.81517 0.89554 0.83018 1.90960 1.52495 1.64681 1.33721 1.44240 1.48651 1.13861 1.03877 1.17893 0.97505 0.81933 1.02982 1.21044 0.99621 0.91417 0.96991 1.21244 0.96207 0.96965 1.00839 1.17931 0.95077 0.80162 0.98228 1.91530 1.86297 1.38431 1.95248 1.21197 1.02421 0.91919 1.00033 1.20945 0.92702 0.97238 0.97557 1.72049 1.06876 1.08558 1.12215 0.93617 0.93778 0.89352 0.90410 0.87611 0.95307 0.97373 0.92379 0.80563 0.78132 0.83211 0.81248 0.81576 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.80 9.57 71.98 0.69 -3.11 16 2 C 0.10 3.07 5.71 86.38 0.49 3.56 16 3 N -0.58 -23.62 2.48 -829.58 -2.05 -25.67 16 4 C 0.26 13.34 5.15 85.63 0.44 13.78 16 5 C -0.54 -29.84 9.39 25.60 0.24 -29.60 16 6 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.68 5.46 84.66 0.46 1.14 16 8 N -0.93 -53.96 13.29 21.45 0.28 -53.67 16 9 Si 0.96 43.19 29.54 68.60 2.03 45.21 16 10 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 C 0.57 22.61 7.58 86.79 0.66 23.27 16 14 O -0.57 -26.98 15.96 -3.89 -0.06 -27.05 16 15 C 0.03 0.88 6.59 42.55 0.28 1.16 16 16 C -0.03 -0.65 9.68 22.65 0.22 -0.43 16 17 C -0.17 -3.56 10.11 22.56 0.23 -3.33 16 18 C 0.47 11.77 7.22 84.99 0.61 12.39 16 19 O -0.54 -15.27 15.16 -5.26 -0.08 -15.35 16 20 N -0.29 -7.06 3.38 -311.84 -1.05 -8.11 16 21 C 0.09 1.83 5.75 38.19 0.22 2.05 16 22 C -0.07 -1.26 9.56 22.40 0.21 -1.05 16 23 C -0.13 -1.95 10.02 22.29 0.22 -1.73 16 24 C 0.11 1.67 7.30 22.40 0.16 1.83 16 25 F -0.14 -2.28 17.27 44.97 0.78 -1.50 16 26 C -0.14 -2.10 10.02 22.29 0.22 -1.87 16 27 C -0.06 -1.23 8.61 22.39 0.19 -1.04 16 28 N -0.17 -4.41 4.44 -48.20 -0.21 -4.63 16 29 H 0.04 1.23 6.71 -2.38 -0.02 1.21 16 30 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 2.45 8.02 -2.38 -0.02 2.43 16 33 H 0.11 2.90 4.23 -2.76 -0.01 2.89 16 34 H 0.03 1.50 8.07 -2.39 -0.02 1.49 16 35 H 0.01 0.48 7.38 -2.39 -0.02 0.46 16 36 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.18 3.82 7.73 -2.91 -0.02 3.80 16 38 H 0.20 2.79 8.06 -2.91 -0.02 2.77 16 39 H 0.15 2.50 6.95 -2.91 -0.02 2.48 16 40 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 41 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.14 2.76 6.94 -2.91 -0.02 2.74 16 Total: -1.00 -69.99 363.15 6.26 -63.73 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.07 Total: 10.01 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 5.56 Total: 17.03 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -3.04 Total: -92.09 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.14 Total: -42.39 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.99 6.26 -63.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267386611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.854 kcal (2) G-P(sol) polarization free energy of solvation -69.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds