Wall clock time and date at job start Sat Apr 11 2020 07:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 N 1.46502 * 109.46922 * 299.99561 * 3 2 1 5 5 C 1.36931 * 119.99772 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00311 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00193 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99921 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00475 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46828 * 89.99663 * 9 7 5 11 11 H 1.48498 * 109.47184 * 209.99846 * 9 7 5 12 12 H 1.48500 * 109.46759 * 329.99758 * 9 7 5 13 13 N 1.46497 * 109.47382 * 239.99699 * 2 1 3 14 14 C 1.34773 * 119.99992 * 175.39597 * 13 2 1 15 15 O 1.21608 * 120.00392 * 355.81963 * 14 13 2 16 16 C 1.47397 * 119.99940 * 175.81891 * 14 13 2 17 17 C 1.38875 * 120.01883 * 0.02562 * 16 14 13 18 18 C 1.38235 * 120.45888 * 179.97438 * 17 16 14 19 19 C 1.37953 * 120.27895 * 359.97438 * 18 17 16 20 20 C 1.39196 * 120.44738 * 0.04323 * 19 18 17 21 21 S 1.76136 * 131.63172 * 179.97438 * 20 19 18 22 22 C 1.70686 * 90.71187 * 179.97438 * 21 20 19 23 23 N 1.28150 * 111.37460 * 0.02562 * 22 21 20 24 24 C 1.33640 * 118.02250 * 359.97438 * 23 22 21 25 25 C 1.53001 * 109.46669 * 119.99621 * 2 1 3 26 26 C 1.52999 * 117.49649 * 121.76131 * 25 2 1 27 27 C 1.53000 * 60.00224 * 252.50862 * 26 25 2 28 28 H 1.08995 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47584 * 300.00602 * 1 2 3 30 30 H 1.09006 * 109.47027 * 60.00369 * 1 2 3 31 31 H 1.09003 * 109.47188 * 59.99800 * 3 2 1 32 32 H 1.08997 * 109.47056 * 179.97438 * 3 2 1 33 33 H 0.97002 * 119.99716 * 0.02562 * 4 3 2 34 34 H 0.96994 * 120.00111 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00079 * 355.39595 * 13 2 1 36 36 H 1.07998 * 119.76371 * 359.97438 * 17 16 14 37 37 H 1.07998 * 119.85810 * 179.97438 * 18 17 16 38 38 H 1.07998 * 119.77556 * 180.02562 * 19 18 17 39 39 H 1.07998 * 124.31150 * 179.97438 * 22 21 20 40 40 H 1.08998 * 115.55141 * 267.46223 * 25 2 1 41 41 H 1.09007 * 117.50193 * 359.97438 * 26 25 2 42 42 H 1.09005 * 117.50413 * 145.02250 * 26 25 2 43 43 H 1.08998 * 117.49784 * 252.51255 * 27 26 25 44 44 H 1.09002 * 117.49649 * 107.48445 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5518 2.1331 -1.1963 5 6 1.8831 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4200 4.0984 -2.5464 8 7 0.6629 3.4589 -3.4126 9 14 1.8713 5.8868 -2.8421 10 1 3.1338 5.9564 -3.6208 11 1 0.7834 6.5527 -3.6023 12 1 2.0556 6.5729 -1.5380 13 7 2.0184 -0.6906 -1.1961 14 6 3.3399 -0.7333 -1.4572 15 8 4.1206 -0.1347 -0.7424 16 6 3.8389 -1.5054 -2.6093 17 6 2.9477 -2.1888 -3.4262 18 6 3.4057 -2.9154 -4.5094 19 6 4.7552 -2.9687 -4.7907 20 6 5.6702 -2.2934 -3.9881 21 16 7.4246 -2.1607 -4.0706 22 6 7.4358 -1.1651 -2.6843 23 7 6.2503 -0.9743 -2.2366 24 6 5.2340 -1.5507 -2.8853 25 6 2.0399 -0.7212 1.2493 26 6 2.9488 -1.9345 1.0431 27 6 1.5078 -2.1303 1.5183 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9938 1.6617 -1.8346 34 1 0.3397 3.9161 -4.2046 35 1 1.3907 -1.1173 -1.8001 36 1 1.8894 -2.1522 -3.2137 37 1 2.7040 -3.4435 -5.1380 38 1 5.1040 -3.5385 -5.6392 39 1 8.3284 -0.7495 -2.2404 40 1 2.2376 -0.0847 2.1118 41 1 3.1833 -2.2192 0.0173 42 1 3.7449 -2.0965 1.7699 43 1 1.3557 -2.4209 2.5578 44 1 0.7944 -2.5434 0.8052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732287483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:09 Heat of formation + Delta-G solvation = 86.808880 kcal Electronic energy + Delta-G solvation = -28589.570221 eV Core-core repulsion = 24828.719011 eV Total energy + Delta-G solvation = -3760.851209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86523 -39.77726 -37.17354 -36.66886 -34.87778 -33.32776 -31.97715 -30.61687 -29.98328 -29.34429 -25.97549 -25.12344 -24.18871 -23.59886 -22.04934 -21.70174 -21.26830 -20.88483 -18.92335 -18.65332 -17.21071 -17.05592 -16.42052 -16.00809 -15.56910 -15.22873 -15.15396 -14.89664 -14.31161 -14.20354 -13.78237 -13.59508 -13.50428 -13.21627 -12.80216 -12.72881 -12.21916 -12.10929 -12.01036 -11.98209 -11.76091 -11.30144 -11.25134 -11.01795 -10.79969 -10.73712 -10.68322 -10.17770 -10.12496 -9.98539 -9.79927 -9.60111 -9.56479 -9.13752 -8.86337 -8.64390 -8.48691 -8.19082 -6.73187 -5.66123 -2.90832 0.17292 0.76958 1.15070 1.59756 2.33819 3.08499 3.44536 3.50780 3.55620 3.57202 3.92972 3.97727 4.08505 4.48156 4.67768 4.71808 4.86361 4.92460 5.02891 5.08192 5.16421 5.21536 5.33195 5.47769 5.55290 5.65792 5.71118 5.77512 5.81866 5.87167 5.96983 6.04922 6.09015 6.11340 6.22518 6.33636 6.36891 6.43265 6.43990 6.68344 6.70463 7.03709 7.29335 7.63658 7.82662 7.98744 8.54181 8.76591 9.65349 10.24523 10.60227 11.57550 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.004436 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.860649 B = 6310.960999 C = 8032.995334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.202 3.798 3 C 0.138 3.862 4 N -0.725 5.725 5 C -0.223 4.223 6 H 0.068 0.932 7 C -0.018 4.018 8 N -0.939 5.939 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.714 5.714 14 C 0.559 3.441 15 O -0.485 6.485 16 C -0.068 4.068 17 C -0.074 4.074 18 C -0.107 4.107 19 C -0.054 4.054 20 C -0.189 4.189 21 S 0.078 5.922 22 C 0.070 3.930 23 N -0.429 5.429 24 C 0.130 3.870 25 C -0.142 4.142 26 C -0.162 4.162 27 C -0.183 4.183 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.381 0.619 34 H 0.252 0.748 35 H 0.392 0.608 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.204 0.796 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.661 -19.756 0.132 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.116 3.884 3 C 0.010 3.990 4 N -0.369 5.369 5 C -0.355 4.355 6 H 0.086 0.914 7 C -0.213 4.213 8 N -0.589 5.589 9 Si 0.735 3.265 10 H -0.220 1.220 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.367 5.367 14 C 0.345 3.655 15 O -0.359 6.359 16 C -0.074 4.074 17 C -0.096 4.096 18 C -0.128 4.128 19 C -0.077 4.077 20 C -0.308 4.308 21 S 0.331 5.669 22 C -0.234 4.234 23 N -0.139 5.139 24 C 0.007 3.993 25 C -0.162 4.162 26 C -0.199 4.199 27 C -0.220 4.220 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.076 0.924 33 H 0.215 0.785 34 H 0.062 0.938 35 H 0.226 0.774 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.221 0.779 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.096 -19.126 0.606 20.778 hybrid contribution -1.006 0.888 -0.622 1.479 sum 7.090 -18.239 -0.016 19.568 Atomic orbital electron populations 1.21985 0.93159 1.01262 1.04090 1.20049 0.93604 0.92662 0.82036 1.21186 0.99398 0.87614 0.90759 1.42225 1.61071 1.10437 1.23162 1.19238 1.24493 0.87605 1.04165 0.91430 1.24648 1.00992 0.98103 0.97550 1.69644 1.40045 1.35980 1.13197 0.86219 0.77323 0.85287 0.77630 1.21995 1.21927 1.20845 1.45898 1.06702 1.57471 1.26641 1.17602 0.82720 0.81094 0.84129 1.90820 1.55444 1.41450 1.48169 1.19831 0.90074 0.99763 0.97764 1.21266 0.99567 0.94904 0.93834 1.21048 0.94862 0.99437 0.97490 1.20434 0.92001 0.97397 0.97837 1.23865 0.97506 1.06977 1.02405 1.83880 1.00310 1.50961 1.31704 1.28412 0.99029 0.99509 0.96495 1.65935 0.97972 1.20174 1.29785 1.18762 0.93117 0.95774 0.91654 1.22562 1.03957 0.90169 0.99515 1.22898 0.92723 1.02257 1.02020 1.22959 0.97505 1.00130 1.01440 0.92925 0.90982 0.90741 0.96262 0.92428 0.78530 0.93845 0.77371 0.84302 0.84101 0.84904 0.77936 0.87372 0.89127 0.89599 0.89393 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.17 37.16 0.30 -1.90 16 2 C 0.20 3.41 0.55 -131.82 -0.07 3.34 16 3 C 0.14 3.06 4.83 -4.04 -0.02 3.04 16 4 N -0.72 -18.93 5.18 -59.91 -0.31 -19.24 16 5 C -0.22 -6.58 9.99 -15.06 -0.15 -6.73 16 6 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 7 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 8 N -0.94 -28.86 13.06 55.49 0.72 -28.14 16 9 Si 0.90 23.52 29.55 -169.99 -5.02 18.49 16 10 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 13 N -0.71 -11.52 4.15 -48.68 -0.20 -11.72 16 14 C 0.56 10.31 4.77 -12.53 -0.06 10.25 16 15 O -0.49 -10.67 12.06 5.27 0.06 -10.60 16 16 C -0.07 -1.10 5.92 -104.38 -0.62 -1.72 16 17 C -0.07 -0.90 9.49 -39.35 -0.37 -1.28 16 18 C -0.11 -1.06 10.02 -39.69 -0.40 -1.46 16 19 C -0.05 -0.57 10.05 -39.33 -0.40 -0.96 16 20 C -0.19 -2.49 6.55 -38.59 -0.25 -2.74 16 21 S 0.08 0.83 23.18 -107.50 -2.49 -1.66 16 22 C 0.07 0.88 12.12 51.23 0.62 1.50 16 23 N -0.43 -7.36 9.43 -12.74 -0.12 -7.48 16 24 C 0.13 2.15 6.73 -84.89 -0.57 1.57 16 25 C -0.14 -2.15 4.86 -90.62 -0.44 -2.59 16 26 C -0.16 -2.35 8.52 -26.73 -0.23 -2.58 16 27 C -0.18 -2.23 9.68 -26.73 -0.26 -2.49 16 28 H 0.05 0.63 6.89 -51.93 -0.36 0.27 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.28 6.86 -51.93 -0.36 0.92 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.44 5.72 -51.93 -0.30 1.15 16 33 H 0.38 10.12 6.35 -40.82 -0.26 9.86 16 34 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.39 5.27 6.48 -40.82 -0.26 5.01 16 36 H 0.14 1.34 6.35 -52.49 -0.33 1.01 16 37 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.11 1.65 8.06 -51.93 -0.42 1.23 16 41 H 0.09 1.41 5.17 -51.93 -0.27 1.14 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.09 1.01 7.17 -51.93 -0.37 0.64 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -36.78 367.62 -10.26 -47.04 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -5.43 Total: 13.15 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.01 Total: -5.38 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: 0.09 Total: -66.58 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.06 Total: -10.60 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.49 Total: -1.66 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.78 -10.26 -47.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732287483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.852 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds