Wall clock time and date at job start Sat Apr 11 2020 07:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 N 1.46502 * 109.46922 * 299.99561 * 3 2 1 5 5 C 1.36931 * 119.99772 * 180.02562 * 4 3 2 6 6 H 1.08002 * 120.00311 * 359.97438 * 5 4 3 7 7 C 1.38811 * 120.00193 * 180.02562 * 5 4 3 8 8 N 1.31625 * 119.99921 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00475 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46828 * 89.99663 * 9 7 5 11 11 H 1.48498 * 109.47184 * 209.99846 * 9 7 5 12 12 H 1.48500 * 109.46759 * 329.99758 * 9 7 5 13 13 N 1.46497 * 109.47382 * 239.99699 * 2 1 3 14 14 C 1.34773 * 119.99992 * 175.39597 * 13 2 1 15 15 O 1.21608 * 120.00392 * 355.81963 * 14 13 2 16 16 C 1.47397 * 119.99940 * 175.81891 * 14 13 2 17 17 C 1.38875 * 120.01883 * 0.02562 * 16 14 13 18 18 C 1.38235 * 120.45888 * 179.97438 * 17 16 14 19 19 C 1.37953 * 120.27895 * 359.97438 * 18 17 16 20 20 C 1.39196 * 120.44738 * 0.04323 * 19 18 17 21 21 S 1.76136 * 131.63172 * 179.97438 * 20 19 18 22 22 C 1.70686 * 90.71187 * 179.97438 * 21 20 19 23 23 N 1.28150 * 111.37460 * 0.02562 * 22 21 20 24 24 C 1.33640 * 118.02250 * 359.97438 * 23 22 21 25 25 C 1.53001 * 109.46669 * 119.99621 * 2 1 3 26 26 C 1.52999 * 117.49649 * 121.76131 * 25 2 1 27 27 C 1.53000 * 60.00224 * 252.50862 * 26 25 2 28 28 H 1.08995 * 109.47374 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47584 * 300.00602 * 1 2 3 30 30 H 1.09006 * 109.47027 * 60.00369 * 1 2 3 31 31 H 1.09003 * 109.47188 * 59.99800 * 3 2 1 32 32 H 1.08997 * 109.47056 * 179.97438 * 3 2 1 33 33 H 0.97002 * 119.99716 * 0.02562 * 4 3 2 34 34 H 0.96994 * 120.00111 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00079 * 355.39595 * 13 2 1 36 36 H 1.07998 * 119.76371 * 359.97438 * 17 16 14 37 37 H 1.07998 * 119.85810 * 179.97438 * 18 17 16 38 38 H 1.07998 * 119.77556 * 180.02562 * 19 18 17 39 39 H 1.07998 * 124.31150 * 179.97438 * 22 21 20 40 40 H 1.08998 * 115.55141 * 267.46223 * 25 2 1 41 41 H 1.09007 * 117.50193 * 359.97438 * 26 25 2 42 42 H 1.09005 * 117.50413 * 145.02250 * 26 25 2 43 43 H 1.08998 * 117.49784 * 252.51255 * 27 26 25 44 44 H 1.09002 * 117.49649 * 107.48445 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5518 2.1331 -1.1963 5 6 1.8831 3.4439 -1.4132 6 1 2.5039 3.9688 -0.7023 7 6 1.4200 4.0984 -2.5464 8 7 0.6629 3.4589 -3.4126 9 14 1.8713 5.8868 -2.8421 10 1 3.1338 5.9564 -3.6208 11 1 0.7834 6.5527 -3.6023 12 1 2.0556 6.5729 -1.5380 13 7 2.0184 -0.6906 -1.1961 14 6 3.3399 -0.7333 -1.4572 15 8 4.1206 -0.1347 -0.7424 16 6 3.8389 -1.5054 -2.6093 17 6 2.9477 -2.1888 -3.4262 18 6 3.4057 -2.9154 -4.5094 19 6 4.7552 -2.9687 -4.7907 20 6 5.6702 -2.2934 -3.9881 21 16 7.4246 -2.1607 -4.0706 22 6 7.4358 -1.1651 -2.6843 23 7 6.2503 -0.9743 -2.2366 24 6 5.2340 -1.5507 -2.8853 25 6 2.0399 -0.7212 1.2493 26 6 2.9488 -1.9345 1.0431 27 6 1.5078 -2.1303 1.5183 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4425 0.0005 33 1 0.9938 1.6617 -1.8346 34 1 0.3397 3.9161 -4.2046 35 1 1.3907 -1.1173 -1.8001 36 1 1.8894 -2.1522 -3.2137 37 1 2.7040 -3.4435 -5.1380 38 1 5.1040 -3.5385 -5.6392 39 1 8.3284 -0.7495 -2.2404 40 1 2.2376 -0.0847 2.1118 41 1 3.1833 -2.2192 0.0173 42 1 3.7449 -2.0965 1.7699 43 1 1.3557 -2.4209 2.5578 44 1 0.7944 -2.5434 0.8052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732287483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:08 Heat of formation + Delta-G solvation = 61.334846 kcal Electronic energy + Delta-G solvation = -28590.674858 eV Core-core repulsion = 24828.719011 eV Total energy + Delta-G solvation = -3761.955846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99851 -40.94745 -38.36059 -37.74830 -36.59700 -34.93166 -33.50725 -32.14075 -30.91401 -30.84207 -27.65861 -26.12270 -25.61059 -25.07761 -23.13367 -23.04006 -22.59023 -21.98938 -20.30700 -19.72083 -19.26581 -18.10422 -17.40996 -17.24562 -16.96183 -16.59792 -16.15807 -16.08147 -15.92680 -15.47145 -15.20017 -15.07219 -14.88385 -14.58558 -14.52402 -13.66137 -13.52211 -13.47698 -13.27949 -13.07551 -13.00107 -12.90023 -12.82341 -12.40099 -12.28476 -12.21233 -12.13421 -12.00215 -11.78634 -11.23358 -11.13461 -11.10007 -10.93572 -10.61380 -10.27678 -9.89938 -9.78227 -9.11609 -8.90962 -7.96073 -5.20852 -0.79649 -0.16355 0.28246 0.64860 1.40730 1.41021 1.43151 1.51339 1.93443 2.21484 2.53375 2.82362 2.95421 3.06812 3.36695 3.54945 3.65261 3.85263 3.92060 4.00625 4.02472 4.17508 4.20196 4.20431 4.36226 4.36789 4.49149 4.57831 4.63934 4.78680 4.88011 4.92176 4.97315 5.02679 5.04868 5.08819 5.20166 5.21912 5.29349 5.34470 5.38264 5.45591 5.61994 5.76720 6.27584 6.65431 6.75908 7.34291 7.47218 8.09870 8.39244 9.27224 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.008638 B = 0.004436 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3240.860649 B = 6310.960999 C = 8032.995334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.210 3.790 3 C 0.140 3.860 4 N -0.727 5.727 5 C -0.241 4.241 6 H 0.058 0.942 7 C -0.069 4.069 8 N -0.963 5.963 9 Si 0.966 3.034 10 H -0.294 1.294 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.555 3.445 15 O -0.536 6.536 16 C -0.116 4.116 17 C -0.066 4.066 18 C -0.101 4.101 19 C -0.044 4.044 20 C -0.214 4.214 21 S 0.148 5.852 22 C 0.059 3.941 23 N -0.492 5.492 24 C 0.096 3.904 25 C -0.162 4.162 26 C -0.173 4.173 27 C -0.142 4.142 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.015 0.985 32 H 0.024 0.976 33 H 0.377 0.623 34 H 0.251 0.749 35 H 0.405 0.595 36 H 0.160 0.840 37 H 0.186 0.814 38 H 0.171 0.829 39 H 0.229 0.771 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.110 0.890 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.878 -22.117 -1.390 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.124 3.876 3 C 0.013 3.987 4 N -0.370 5.370 5 C -0.373 4.373 6 H 0.076 0.924 7 C -0.261 4.261 8 N -0.614 5.614 9 Si 0.795 3.205 10 H -0.222 1.222 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.343 3.657 15 O -0.413 6.413 16 C -0.122 4.122 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.067 4.067 20 C -0.333 4.333 21 S 0.402 5.598 22 C -0.244 4.244 23 N -0.205 5.205 24 C -0.027 4.027 25 C -0.182 4.182 26 C -0.210 4.210 27 C -0.179 4.179 28 H 0.110 0.890 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.042 0.958 33 H 0.211 0.789 34 H 0.060 0.940 35 H 0.242 0.758 36 H 0.178 0.822 37 H 0.203 0.797 38 H 0.189 0.811 39 H 0.245 0.755 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.305 -21.519 -0.915 22.744 hybrid contribution -0.642 1.562 -0.202 1.701 sum 6.664 -19.957 -1.117 21.070 Atomic orbital electron populations 1.21920 0.91239 1.03439 1.02978 1.19857 0.94776 0.89553 0.83397 1.21192 0.97421 0.91167 0.88959 1.42266 1.60871 1.09673 1.24196 1.19510 1.24341 0.89181 1.04280 0.92375 1.25382 1.01310 1.02070 0.97387 1.69769 1.40832 1.37353 1.13434 0.85250 0.76819 0.80721 0.77675 1.22189 1.21193 1.19895 1.45804 1.06503 1.56930 1.26628 1.18092 0.82795 0.80498 0.84335 1.90779 1.56642 1.43779 1.50089 1.19889 0.91090 1.02487 0.98771 1.21636 1.00034 0.93568 0.93466 1.21572 0.95536 0.98376 0.96697 1.21013 0.91946 0.95945 0.97761 1.24302 0.99596 1.07246 1.02179 1.83475 0.98015 1.48952 1.29311 1.28922 0.98808 0.99305 0.97360 1.65940 0.99540 1.22700 1.32280 1.19059 0.93351 0.97110 0.93154 1.22431 1.06029 0.91309 0.98407 1.22830 0.94293 1.02449 1.01444 1.23072 0.95541 0.96205 1.03091 0.89004 0.90751 0.93138 0.96763 0.95776 0.78907 0.93992 0.75825 0.82212 0.79651 0.81139 0.75469 0.88273 0.90305 0.90170 0.87154 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.17 71.98 0.59 -3.43 16 2 C 0.21 7.25 0.55 3.61 0.00 7.26 16 3 C 0.14 6.56 4.83 86.38 0.42 6.97 16 4 N -0.73 -39.57 5.18 -343.45 -1.78 -41.35 16 5 C -0.24 -14.69 9.99 84.03 0.84 -13.85 16 6 H 0.06 3.57 7.83 -2.91 -0.02 3.54 16 7 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.96 -59.96 13.06 21.65 0.28 -59.68 16 9 Si 0.97 49.08 29.55 68.60 2.03 51.10 16 10 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 11 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.71 -23.27 4.15 -426.18 -1.77 -25.04 16 14 C 0.56 21.63 4.77 86.66 0.41 22.05 16 15 O -0.54 -25.56 12.06 -4.06 -0.05 -25.61 16 16 C -0.12 -3.89 5.92 -19.71 -0.12 -4.00 16 17 C -0.07 -1.52 9.49 22.42 0.21 -1.31 16 18 C -0.10 -1.66 10.02 22.20 0.22 -1.44 16 19 C -0.04 -0.80 10.05 22.43 0.23 -0.57 16 20 C -0.21 -5.45 6.55 22.91 0.15 -5.30 16 21 S 0.15 2.95 23.18 -56.49 -1.31 1.64 16 22 C 0.06 1.52 12.12 130.78 1.58 3.11 16 23 N -0.49 -17.99 9.43 -194.20 -1.83 -19.82 16 24 C 0.10 3.29 6.73 40.28 0.27 3.56 16 25 C -0.16 -4.93 4.86 -10.79 -0.05 -4.99 16 26 C -0.17 -5.09 8.52 30.59 0.26 -4.83 16 27 C -0.14 -3.13 9.68 30.60 0.30 -2.84 16 28 H 0.09 1.93 6.89 -2.39 -0.02 1.91 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.72 6.86 -2.38 -0.02 1.70 16 31 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.02 1.32 5.72 -2.39 -0.01 1.31 16 33 H 0.38 20.75 6.35 -92.71 -0.59 20.16 16 34 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.40 10.72 6.48 -92.71 -0.60 10.12 16 36 H 0.16 2.77 6.35 -2.91 -0.02 2.75 16 37 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.23 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.10 3.15 8.06 -2.39 -0.02 3.13 16 41 H 0.08 2.54 5.17 -2.38 -0.01 2.53 16 42 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 43 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.11 2.02 7.17 -2.39 -0.02 2.01 16 Total: -1.00 -85.99 367.62 1.23 -84.75 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.12 Total: 37.32 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.78 Total: -3.31 kcal Atomic # 7 Polarization: -140.80 SS G_CDS: -5.09 Total: -145.89 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.03 Total: 51.10 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.31 Total: 1.64 kcal Total: -85.99 1.23 -84.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732287483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.086 kcal (2) G-P(sol) polarization free energy of solvation -85.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds