Wall clock time and date at job start Sat Apr 11 2020 07:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47062 * 2 1 4 4 N 1.30942 * 122.90157 * 90.02611 * 3 2 1 5 5 C 1.29434 * 117.36033 * 179.97438 * 4 3 2 6 6 S 1.70945 * 110.39171 * 0.02562 * 5 4 3 7 7 C 1.35659 * 122.90456 * 270.00277 * 3 2 1 8 8 C 1.46681 * 126.13303 * 0.02562 * 7 3 2 9 9 O 1.21691 * 119.99712 * 0.02562 * 8 7 3 10 10 N 1.34777 * 120.00468 * 180.02562 * 8 7 3 11 11 C 1.46494 * 120.00385 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.47394 * 179.97438 * 11 10 8 13 13 C 1.38235 * 120.00234 * 269.72861 * 12 11 10 14 14 C 1.38239 * 119.99683 * 179.76178 * 13 12 11 15 15 C 1.38234 * 120.00179 * 0.49014 * 14 13 12 16 16 C 1.50699 * 120.00143 * 179.76784 * 15 14 13 17 17 N 1.46504 * 109.46971 * 270.02198 * 16 15 14 18 18 C 1.36934 * 120.00071 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99938 * 0.02562 * 18 17 16 20 20 C 1.38819 * 119.99893 * 179.97438 * 18 17 16 21 21 N 1.31609 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99493 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47370 * 60.00693 * 22 20 18 24 24 H 1.48505 * 109.46737 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47395 * 300.00068 * 22 20 18 26 26 C 1.38233 * 119.99847 * 359.78747 * 15 14 13 27 27 C 1.38237 * 120.00473 * 359.95885 * 26 15 14 28 28 H 1.08997 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47055 * 299.99643 * 1 2 3 30 30 H 1.08996 * 109.47397 * 59.99913 * 1 2 3 31 31 H 1.08998 * 109.47055 * 240.00357 * 2 1 3 32 32 H 1.08996 * 109.47397 * 120.00087 * 2 1 3 33 33 H 1.07996 * 124.80078 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99335 * 359.97438 * 10 8 7 35 35 H 1.08997 * 109.47326 * 300.00673 * 11 10 8 36 36 H 1.09004 * 109.46710 * 59.99979 * 11 10 8 37 37 H 1.07998 * 120.00282 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.99491 * 180.25366 * 14 13 12 39 39 H 1.08999 * 109.47066 * 30.01591 * 16 15 14 40 40 H 1.08998 * 109.47245 * 150.02433 * 16 15 14 41 41 H 0.97001 * 120.00174 * 359.97438 * 17 16 15 42 42 H 0.96997 * 120.00169 * 179.97438 * 21 20 18 43 43 H 1.08006 * 120.00091 * 179.97438 * 26 15 14 44 44 H 1.07991 * 120.00249 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2699 2.0913 1.0994 5 6 2.6997 3.3057 0.9744 6 16 2.8449 3.7191 -0.6779 7 6 2.2779 2.1157 -1.1390 8 6 2.1025 1.6211 -2.5087 9 8 1.7009 0.4884 -2.6998 10 7 2.3859 2.4212 -3.5556 11 6 2.2112 1.9270 -4.9236 12 6 2.5935 3.0084 -5.9010 13 6 1.6390 3.9000 -6.3537 14 6 1.9909 4.8950 -7.2465 15 6 3.2950 4.9921 -7.6945 16 6 3.6775 6.0736 -8.6718 17 7 3.5027 5.5795 -10.0399 18 6 3.7897 6.3927 -11.1035 19 1 4.1454 7.3983 -10.9339 20 6 3.6246 5.9243 -12.3998 21 7 3.1916 4.6988 -12.6066 22 14 4.0169 7.0336 -13.8507 23 1 5.4451 7.4362 -13.7941 24 1 3.7581 6.3023 -15.1170 25 1 3.1586 8.2443 -13.7946 26 6 4.2482 4.0970 -7.2462 27 6 3.8976 3.1052 -6.3494 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.9336 3.9646 1.7976 34 1 2.7056 3.3242 -3.4032 35 1 2.8465 1.0551 -5.0789 36 1 1.1687 1.6492 -5.0791 37 1 0.6193 3.8219 -6.0065 38 1 1.2460 5.5941 -7.5970 39 1 3.0417 6.9452 -8.5164 40 1 4.7199 6.3517 -8.5164 41 1 3.1836 4.6762 -10.1923 42 1 3.0759 4.3716 -13.5123 43 1 5.2671 4.1726 -7.5966 44 1 4.6424 2.4061 -5.9989 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732316379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:11 Heat of formation + Delta-G solvation = 18.345231 kcal Electronic energy + Delta-G solvation = -25774.487415 eV Core-core repulsion = 22010.667398 eV Total energy + Delta-G solvation = -3763.820016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54598 -40.65351 -39.89687 -36.97180 -35.86136 -34.43071 -33.79983 -32.11088 -31.85844 -30.83235 -28.50909 -27.10135 -25.90739 -24.31603 -24.09913 -23.63367 -22.68180 -21.74061 -20.57351 -19.39197 -19.32849 -18.14858 -17.13475 -16.98755 -16.87552 -16.51581 -16.28085 -16.04486 -15.67509 -15.43195 -15.25135 -15.18129 -15.02513 -14.85862 -14.48042 -14.34501 -14.07612 -13.71740 -13.43213 -13.39043 -13.11967 -12.99495 -12.94010 -12.73052 -12.33222 -12.23194 -11.95344 -11.92236 -11.89146 -11.74396 -11.24255 -10.97499 -10.78383 -10.67338 -10.23417 -9.88476 -9.82349 -9.66216 -9.03599 -7.95823 -5.26196 -0.80893 0.17240 0.22291 0.50108 0.53738 1.36877 1.47560 1.50810 1.57060 2.03673 2.04152 2.55280 2.86727 3.15227 3.37167 3.58678 3.72520 3.88901 3.97089 4.04153 4.08997 4.13090 4.24533 4.27844 4.38054 4.44366 4.55638 4.56938 4.67637 4.69002 4.89462 4.89743 4.96137 5.01588 5.06623 5.16222 5.19459 5.20882 5.35998 5.44993 5.47309 5.58418 5.81017 6.05328 6.24670 6.29282 6.56898 6.98689 7.31419 8.04610 8.29487 9.27170 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.001751 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.343120 B =15991.091451 C =16622.704804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C 0.141 3.859 4 N -0.502 5.502 5 C 0.047 3.953 6 S 0.211 5.789 7 C -0.325 4.325 8 C 0.595 3.405 9 O -0.550 6.550 10 N -0.710 5.710 11 C 0.173 3.827 12 C -0.113 4.113 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.085 4.085 16 C 0.185 3.815 17 N -0.739 5.739 18 C -0.250 4.250 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.977 3.023 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.276 1.276 26 C -0.115 4.115 27 C -0.097 4.097 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.245 0.755 34 H 0.408 0.592 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.142 0.858 38 H 0.122 0.878 39 H 0.031 0.969 40 H 0.031 0.969 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.122 0.878 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 -3.602 31.140 31.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 C 0.002 3.998 4 N -0.216 5.216 5 C -0.247 4.247 6 S 0.467 5.533 7 C -0.449 4.449 8 C 0.382 3.618 9 O -0.430 6.430 10 N -0.361 5.361 11 C 0.050 3.950 12 C -0.113 4.113 13 C -0.116 4.116 14 C -0.134 4.134 15 C -0.086 4.086 16 C 0.059 3.941 17 N -0.382 5.382 18 C -0.381 4.381 19 H 0.097 0.903 20 C -0.268 4.268 21 N -0.619 5.619 22 Si 0.806 3.194 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.202 1.202 26 C -0.134 4.134 27 C -0.116 4.116 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.261 0.739 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.140 0.860 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.625 -3.451 30.929 31.163 hybrid contribution -0.026 -0.126 -1.185 1.192 sum -1.651 -3.578 29.744 30.004 Atomic orbital electron populations 1.21536 0.93351 1.02787 1.01089 1.20413 0.97154 0.88515 1.04139 1.20878 0.94932 0.98532 0.85436 1.66177 1.16843 1.07443 1.31107 1.29470 0.98177 0.95393 1.01678 1.83877 1.57271 1.09147 1.02965 1.25461 1.19951 1.01249 0.98280 1.16850 0.77182 0.84761 0.83030 1.90790 1.47420 1.19372 1.85440 1.45914 1.67618 1.17276 1.05329 1.20130 1.02445 0.94352 0.78029 1.19775 0.93965 0.97726 0.99865 1.21206 0.99968 0.93833 0.96560 1.21175 0.95392 0.99306 0.97497 1.20177 0.94630 0.97205 0.96584 1.19773 0.97993 0.93484 0.82812 1.42533 1.80207 1.15087 1.00360 1.19637 1.36032 0.96127 0.86317 0.90340 1.25624 1.02809 0.98142 1.00196 1.69824 1.53979 1.17611 1.20521 0.85162 0.78219 0.77766 0.78288 1.20239 1.22213 1.20250 1.21176 0.99664 0.95078 0.97462 1.21207 0.96153 0.97666 0.96533 0.90659 0.92596 0.93945 0.89134 0.89609 0.73945 0.75637 0.90113 0.90143 0.84016 0.85976 0.95126 0.95127 0.79506 0.93961 0.85972 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.89 71.98 0.71 -1.51 16 2 C -0.06 -1.17 5.75 29.85 0.17 -1.00 16 3 C 0.14 2.70 6.04 42.09 0.25 2.95 16 4 N -0.50 -8.44 10.50 -190.41 -2.00 -10.44 16 5 C 0.05 0.46 12.22 130.60 1.60 2.06 16 6 S 0.21 2.17 22.35 -56.49 -1.26 0.91 16 7 C -0.33 -5.86 6.48 23.88 0.15 -5.71 16 8 C 0.60 12.55 7.78 86.45 0.67 13.22 16 9 O -0.55 -14.64 14.27 -4.32 -0.06 -14.70 16 10 N -0.71 -12.43 5.54 -470.83 -2.61 -15.04 16 11 C 0.17 3.29 5.80 85.63 0.50 3.79 16 12 C -0.11 -2.43 5.25 -19.87 -0.10 -2.53 16 13 C -0.10 -2.27 9.70 22.27 0.22 -2.05 16 14 C -0.12 -3.35 9.70 22.27 0.22 -3.13 16 15 C -0.09 -2.82 5.25 -19.87 -0.10 -2.92 16 16 C 0.19 7.40 6.38 85.63 0.55 7.95 16 17 N -0.74 -37.90 5.59 -347.17 -1.94 -39.84 16 18 C -0.25 -13.95 9.99 84.04 0.84 -13.11 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.08 -4.34 5.50 84.87 0.47 -3.87 16 21 N -0.97 -59.67 13.06 21.65 0.28 -59.39 16 22 Si 0.98 45.91 29.55 68.60 2.03 47.93 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 25 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 26 C -0.12 -3.35 9.70 22.27 0.22 -3.13 16 27 C -0.10 -2.26 9.70 22.27 0.22 -2.05 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 31 H 0.09 1.97 6.01 -2.39 -0.01 1.95 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.24 0.22 8.06 -2.91 -0.02 0.20 16 34 H 0.41 5.82 7.65 -92.71 -0.71 5.11 16 35 H 0.08 1.56 8.09 -2.39 -0.02 1.55 16 36 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 39 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 40 H 0.03 1.21 8.09 -2.39 -0.02 1.19 16 41 H 0.37 20.67 7.66 -92.71 -0.71 19.96 16 42 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 43 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 44 H 0.14 2.65 8.06 -2.92 -0.02 2.63 16 Total: -1.00 -71.55 389.99 0.62 -70.93 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.38 Total: 30.69 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 6.57 Total: -11.05 kcal Atomic # 7 Polarization: -118.45 SS G_CDS: -6.27 Total: -124.72 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.06 Total: -14.70 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.26 Total: 0.91 kcal Total: -71.55 0.62 -70.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732316379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.276 kcal (2) G-P(sol) polarization free energy of solvation -71.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds