Wall clock time and date at job start Sat Apr 11 2020 07:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30939 * 122.90162 * 2 1 4 4 C 1.29428 * 117.36534 * 179.97438 * 3 2 1 5 5 S 1.70962 * 110.38819 * 359.73011 * 4 3 2 6 6 C 1.35661 * 122.90618 * 180.02562 * 2 1 3 7 7 C 1.46687 * 126.12802 * 359.97438 * 6 2 1 8 8 O 1.21687 * 120.00011 * 7.03537 * 7 6 2 9 9 N 1.34773 * 120.00030 * 187.02688 * 7 6 2 10 10 C 1.46503 * 120.00000 * 5.75544 * 9 7 6 11 11 C 1.52999 * 109.47379 * 271.39453 * 10 9 7 12 12 N 1.46492 * 109.47457 * 179.97438 * 11 10 9 13 13 C 1.36935 * 120.00123 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00121 * 0.02562 * 13 12 11 15 15 C 1.38820 * 120.00012 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00000 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00144 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47265 * 89.99488 * 17 15 13 19 19 H 1.48499 * 109.46861 * 209.99890 * 17 15 13 20 20 H 1.48504 * 109.46678 * 329.99391 * 17 15 13 21 21 C 1.46500 * 120.00428 * 185.75074 * 9 7 6 22 22 C 1.50696 * 109.47445 * 270.00405 * 21 9 7 23 23 C 1.38239 * 119.99783 * 89.99609 * 22 21 9 24 24 C 1.38238 * 119.99923 * 179.97438 * 23 22 21 25 25 C 1.38235 * 120.00077 * 0.09252 * 24 23 22 26 26 C 1.38241 * 119.99873 * 359.86391 * 25 24 23 27 27 C 1.38227 * 120.00322 * 269.97588 * 22 21 9 28 28 H 1.09003 * 109.46949 * 269.99473 * 1 2 3 29 29 H 1.08998 * 109.47196 * 29.99702 * 1 2 3 30 30 H 1.09000 * 109.46950 * 150.00046 * 1 2 3 31 31 H 1.07994 * 124.81065 * 179.97438 * 4 3 2 32 32 H 1.09003 * 109.46974 * 31.39465 * 10 9 7 33 33 H 1.08998 * 109.47113 * 151.39268 * 10 9 7 34 34 H 1.08994 * 109.47165 * 299.99826 * 11 10 9 35 35 H 1.09000 * 109.46668 * 59.99669 * 11 10 9 36 36 H 0.97009 * 120.00192 * 0.02562 * 12 11 10 37 37 H 0.97003 * 120.00448 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47517 * 150.00216 * 21 9 7 39 39 H 1.09005 * 109.46344 * 30.00358 * 21 9 7 40 40 H 1.07999 * 119.99896 * 359.70345 * 23 22 21 41 41 H 1.08000 * 120.00238 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00421 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.99894 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.00104 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2183 1.0994 0.0000 4 6 3.5065 0.9745 0.0005 5 16 3.9447 -0.6780 0.0086 6 6 2.2440 -1.1390 -0.0005 7 6 1.7191 -2.5087 -0.0006 8 8 0.5247 -2.7026 -0.1293 9 7 2.5598 -3.5525 0.1417 10 6 3.9784 -3.3176 0.4223 11 6 4.7418 -3.1724 -0.8957 12 7 6.1602 -2.9369 -0.6151 13 6 7.0446 -2.7743 -1.6478 14 1 6.6965 -2.8193 -2.6690 15 6 8.3888 -2.5517 -1.3819 16 7 8.8130 -2.4963 -0.1372 17 14 9.5953 -2.3292 -2.7906 18 1 9.6825 -0.8898 -3.1450 19 1 10.9347 -2.8193 -2.3771 20 1 9.1276 -3.1019 -3.9694 21 6 2.0551 -4.9220 0.0158 22 6 1.6109 -5.4199 1.3670 23 6 0.3067 -5.2238 1.7813 24 6 -0.1009 -5.6810 3.0206 25 6 0.7960 -6.3326 3.8463 26 6 2.1000 -6.5295 3.4315 27 6 2.5073 -6.0731 2.1919 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2057 1.7976 0.0002 32 1 4.0866 -2.4043 1.0074 33 1 4.3817 -4.1594 0.9850 34 1 4.6336 -4.0856 -1.4807 35 1 4.3384 -2.3305 -1.4583 36 1 6.4729 -2.8960 0.3023 37 1 9.7522 -2.3403 0.0487 38 1 2.8460 -5.5670 -0.3670 39 1 1.2099 -4.9359 -0.6724 40 1 -0.3925 -4.7095 1.1387 41 1 -1.1197 -5.5274 3.3445 42 1 0.4777 -6.6894 4.8146 43 1 2.8006 -7.0389 4.0764 44 1 3.5262 -6.2262 1.8683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754836744.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:41 Heat of formation + Delta-G solvation = 45.689513 kcal Electronic energy + Delta-G solvation = -27827.787396 eV Core-core repulsion = 24065.153117 eV Total energy + Delta-G solvation = -3762.634279 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.58087 -40.59449 -39.65133 -37.70288 -36.05115 -33.80192 -32.84521 -32.41506 -31.75642 -29.59443 -29.53100 -27.00399 -25.90593 -25.58201 -23.63882 -23.30491 -22.91863 -21.54085 -19.81337 -19.63507 -18.93539 -17.79325 -17.63176 -17.37145 -16.86322 -16.43801 -16.13884 -16.04847 -15.85508 -15.55652 -15.45012 -15.08361 -14.96707 -14.48144 -14.29876 -14.25197 -13.99876 -13.60307 -13.48676 -13.29562 -13.12185 -12.99485 -12.91612 -12.80462 -12.60530 -12.19369 -12.13078 -12.04113 -11.84418 -11.80402 -11.13292 -11.00304 -10.45798 -10.36272 -9.97984 -9.79638 -9.68210 -9.61320 -8.93785 -7.90611 -5.18820 -0.72749 0.32657 0.38033 0.52739 0.75452 1.40256 1.51913 1.53533 1.60269 1.84421 2.07090 2.59994 2.95411 3.20488 3.40246 3.44197 3.78346 3.81324 3.94888 4.05458 4.08260 4.17230 4.19770 4.23109 4.31036 4.34273 4.44086 4.58903 4.70976 4.72455 4.77649 4.81850 4.88843 4.90385 5.04688 5.11087 5.18786 5.29696 5.38581 5.56956 5.58742 5.63736 5.69818 6.11826 6.13231 6.30243 6.64478 6.92839 7.39586 8.07040 8.34262 9.31683 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.009133 B = 0.004089 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.955664 B = 6846.089040 C = 9179.063132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.132 3.868 3 N -0.505 5.505 4 C -0.015 4.015 5 S 0.272 5.728 6 C -0.345 4.345 7 C 0.601 3.399 8 O -0.541 6.541 9 N -0.592 5.592 10 C 0.098 3.902 11 C 0.136 3.864 12 N -0.728 5.728 13 C -0.237 4.237 14 H 0.072 0.928 15 C -0.060 4.060 16 N -0.961 5.961 17 Si 0.960 3.040 18 H -0.289 1.289 19 H -0.298 1.298 20 H -0.274 1.274 21 C 0.157 3.843 22 C -0.116 4.116 23 C -0.109 4.109 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.131 4.131 27 C -0.114 4.114 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.223 0.777 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.032 0.968 35 H 0.028 0.972 36 H 0.380 0.620 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.823 -3.569 6.082 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.008 4.008 3 N -0.220 5.220 4 C -0.307 4.307 5 S 0.531 5.469 6 C -0.470 4.470 7 C 0.389 3.611 8 O -0.421 6.421 9 N -0.323 5.323 10 C -0.027 4.027 11 C 0.008 3.992 12 N -0.372 5.372 13 C -0.369 4.369 14 H 0.090 0.910 15 C -0.253 4.253 16 N -0.611 5.611 17 Si 0.790 3.210 18 H -0.216 1.216 19 H -0.225 1.225 20 H -0.199 1.199 21 C 0.036 3.964 22 C -0.117 4.117 23 C -0.128 4.128 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.133 4.133 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.239 0.761 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.213 0.787 37 H 0.060 0.940 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.561 -3.608 5.821 17.001 hybrid contribution 0.413 0.482 -0.426 0.764 sum -15.147 -3.126 5.395 16.381 Atomic orbital electron populations 1.20622 0.85446 1.04433 1.03756 1.20991 0.99371 0.85420 0.95033 1.66306 1.05810 1.31683 1.18175 1.29730 0.95645 1.05850 0.99467 1.86086 1.01117 0.98197 1.61476 1.25697 0.98492 0.98940 1.23845 1.16823 0.85551 0.82844 0.75842 1.90688 1.14828 1.85066 1.51553 1.47701 1.08149 1.06029 1.70424 1.22028 0.79655 1.03340 0.97710 1.21206 0.84656 0.98225 0.95134 1.42204 1.02085 1.86930 1.06006 1.19437 0.88959 1.39825 0.88646 0.90976 1.25325 0.98536 1.03492 0.97994 1.69762 1.14913 1.57967 1.18445 0.85351 0.78689 0.77561 0.79409 1.21637 1.22475 1.19890 1.20517 1.00987 0.80645 0.94234 1.20217 0.94442 0.99848 0.97208 1.21281 0.95883 0.98598 0.96992 1.21420 1.00738 0.98801 0.94173 1.21494 0.93586 0.98426 1.00358 1.21443 0.96857 1.00219 0.96320 1.21308 0.99571 0.97822 0.94583 0.89844 0.89967 0.88956 0.76090 0.90084 0.87435 0.94980 0.95445 0.78745 0.93992 0.87691 0.89055 0.86309 0.84598 0.83915 0.84181 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 9.79 71.24 0.70 -1.46 16 2 C 0.13 4.04 6.79 42.09 0.29 4.33 16 3 N -0.50 -15.40 10.50 -190.40 -2.00 -17.40 16 4 C -0.01 -0.41 12.22 130.60 1.60 1.18 16 5 S 0.27 8.15 15.41 -56.49 -0.87 7.28 16 6 C -0.35 -10.72 6.20 23.88 0.15 -10.57 16 7 C 0.60 18.52 7.61 86.45 0.66 19.17 16 8 O -0.54 -17.59 13.03 -4.31 -0.06 -17.64 16 9 N -0.59 -16.26 2.46 -830.87 -2.04 -18.30 16 10 C 0.10 2.80 5.02 86.38 0.43 3.23 16 11 C 0.14 4.74 5.40 86.38 0.47 5.20 16 12 N -0.73 -31.74 5.49 -343.48 -1.89 -33.63 16 13 C -0.24 -11.87 9.99 84.04 0.84 -11.03 16 14 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 15 C -0.06 -3.16 5.50 84.86 0.47 -2.70 16 16 N -0.96 -53.64 13.06 21.65 0.28 -53.36 16 17 Si 0.96 43.16 29.55 68.60 2.03 45.19 16 18 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C 0.16 3.73 5.48 85.63 0.47 4.20 16 22 C -0.12 -2.71 5.46 -19.87 -0.11 -2.82 16 23 C -0.11 -2.58 9.55 22.27 0.21 -2.37 16 24 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 25 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 26 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 27 C -0.11 -2.45 9.70 22.27 0.22 -2.23 16 28 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.09 2.53 5.87 -2.39 -0.01 2.52 16 31 H 0.22 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.08 2.41 4.67 -19.78 -0.09 2.32 16 33 H 0.11 2.84 8.06 -2.39 -0.02 2.82 16 34 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.03 1.01 5.90 -9.80 -0.06 0.95 16 36 H 0.38 17.44 7.67 -92.70 -0.71 16.73 16 37 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 38 H 0.10 2.18 8.02 -2.39 -0.02 2.16 16 39 H 0.09 2.20 7.45 -2.38 -0.02 2.18 16 40 H 0.12 2.99 7.34 -2.91 -0.02 2.97 16 41 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -62.09 375.50 2.71 -59.38 By element: Atomic # 1 Polarization: 30.82 SS G_CDS: 0.20 Total: 31.02 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 7.05 Total: -2.54 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -5.64 Total: -122.69 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.06 Total: -17.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -0.87 Total: 7.28 kcal Total: -62.09 2.71 -59.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754836744.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.070 kcal (2) G-P(sol) polarization free energy of solvation -62.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds