Wall clock time and date at job start Sat Apr 11 2020 07:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99744 * 2 1 4 4 H 1.48509 * 109.47062 * 269.99907 * 3 2 1 5 5 H 1.48494 * 109.47582 * 30.00237 * 3 2 1 6 6 H 1.48502 * 109.47105 * 150.00338 * 3 2 1 7 7 C 1.37873 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00044 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99768 * 359.97438 * 7 2 1 10 10 O 1.42900 * 110.64418 * 59.30622 * 9 7 2 11 11 C 1.55157 * 110.71976 * 182.44654 * 9 7 2 12 12 C 1.55385 * 101.36866 * 153.94385 * 11 9 7 13 13 N 1.47423 * 104.87681 * 323.01993 * 12 11 9 14 14 C 1.34771 * 125.64783 * 204.16644 * 13 12 11 15 15 O 1.21573 * 120.00100 * 354.71674 * 14 13 12 16 16 C 1.47677 * 119.99895 * 174.71946 * 14 13 12 17 17 C 1.39707 * 120.07059 * 187.96601 * 16 14 13 18 18 C 1.37733 * 119.97103 * 179.97438 * 17 16 14 19 19 C 1.39008 * 120.10156 * 359.97438 * 18 17 16 20 20 N 1.39907 * 119.93017 * 180.02562 * 19 18 17 21 21 C 1.35814 * 126.10117 * 180.02562 * 20 19 18 22 22 C 1.35301 * 107.61594 * 179.97438 * 21 20 19 23 23 C 1.39946 * 107.96847 * 359.97438 * 22 21 20 24 24 N 1.30842 * 108.36280 * 359.71972 * 23 22 21 25 25 C 1.39232 * 120.14157 * 0.02635 * 19 18 17 26 26 F 1.35098 * 119.98310 * 179.97438 * 25 19 18 27 27 C 1.37942 * 120.02989 * 359.69993 * 25 19 18 28 28 C 1.47020 * 108.70038 * 24.12711 * 13 12 11 29 29 H 0.97005 * 119.99854 * 359.97438 * 1 2 3 30 30 H 0.96702 * 113.99216 * 300.70129 * 10 9 7 31 31 H 1.09007 * 111.00508 * 272.11927 * 11 9 7 32 32 H 1.09010 * 111.00712 * 35.96464 * 11 9 7 33 33 H 1.09000 * 110.34834 * 204.16170 * 12 11 9 34 34 H 1.09004 * 110.43996 * 81.91844 * 12 11 9 35 35 H 1.08004 * 120.01272 * 359.97438 * 17 16 14 36 36 H 1.07996 * 119.94699 * 180.02562 * 18 17 16 37 37 H 1.07995 * 126.19320 * 359.97438 * 21 20 19 38 38 H 1.07998 * 126.01790 * 179.97438 * 22 21 20 39 39 H 1.08002 * 125.81563 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.05320 * 180.28059 * 27 25 19 41 41 H 1.09002 * 109.88110 * 239.52662 * 28 13 12 42 42 H 1.09004 * 110.01184 * 118.43494 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 0.4075 -2.5938 -1.1501 11 6 2.2322 -3.6995 0.0608 12 6 1.3424 -4.7889 0.7210 13 7 0.5236 -4.0619 1.7080 14 6 -0.0422 -4.5987 2.8071 15 8 0.0236 -5.7970 3.0011 16 6 -0.7423 -3.7313 3.7758 17 6 -1.1837 -4.2553 4.9933 18 6 -1.8359 -3.4443 5.8954 19 6 -2.0554 -2.1045 5.5967 20 7 -2.7179 -1.2838 6.5159 21 6 -2.9980 0.0353 6.3543 22 6 -3.6447 0.4557 7.4659 23 6 -3.7656 -0.6354 8.3338 24 7 -3.2172 -1.6779 7.7642 25 6 -1.6174 -1.5776 4.3847 26 9 -1.8329 -0.2752 4.0974 27 6 -0.9586 -2.3834 3.4794 28 6 0.4274 -2.6541 1.2953 29 1 -0.4850 0.8401 0.0004 30 1 -0.2494 -1.8872 -1.2151 31 1 2.5456 -3.9994 -0.9393 32 1 3.0948 -3.4676 0.6856 33 1 1.9626 -5.5348 1.2181 34 1 0.7048 -5.2632 -0.0251 35 1 -1.0135 -5.2959 5.2270 36 1 -2.1766 -3.8497 6.8367 37 1 -2.7496 0.6392 5.4942 38 1 -4.0044 1.4571 7.6509 39 1 -4.2353 -0.6206 9.3062 40 1 -0.6147 -1.9740 2.5411 41 1 0.8369 -2.0107 2.0741 42 1 -0.6135 -2.3910 1.1067 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771754613.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:25:53 Heat of formation + Delta-G solvation = -0.853450 kcal Electronic energy + Delta-G solvation = -30412.022132 eV Core-core repulsion = 26081.156423 eV Total energy + Delta-G solvation = -4330.865709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.35599 -42.49161 -41.63131 -39.73612 -38.85398 -36.11685 -34.87374 -34.19132 -32.71054 -31.67250 -31.29722 -30.34479 -29.50646 -27.30249 -25.78033 -24.42636 -23.93727 -22.30863 -21.92204 -21.55956 -21.02384 -19.30449 -19.15649 -18.61878 -18.10594 -17.38696 -17.26941 -16.97131 -16.66953 -16.63472 -16.11434 -16.03410 -16.01828 -15.52846 -14.96762 -14.84098 -14.76331 -14.54310 -14.34273 -14.13569 -13.66113 -13.50225 -13.47868 -13.40165 -13.20780 -12.94153 -12.76583 -12.36023 -12.30555 -12.20433 -12.07622 -11.85855 -11.57000 -11.28827 -11.12641 -10.61898 -10.32628 -10.21541 -10.19983 -9.71505 -9.25171 -8.26689 -6.40338 -0.84775 -0.15000 0.76383 1.11225 1.42755 1.47873 1.54480 1.63108 1.76743 1.91005 2.39199 2.46327 2.68468 2.99302 3.13790 3.32678 3.53354 3.77894 3.86183 3.89539 3.97153 4.02598 4.15008 4.23958 4.30880 4.44896 4.50942 4.56607 4.62539 4.69202 4.73586 4.81808 4.85839 4.97285 4.99493 5.06631 5.21645 5.26366 5.33242 5.46018 5.59645 5.74965 5.87502 6.03773 6.43918 6.46680 6.64877 6.95475 7.30733 7.39866 8.79421 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010759 B = 0.004074 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2601.770508 B = 6870.382419 C = 9083.870511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.039 3.961 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.556 4.556 8 H 0.064 0.936 9 C 0.232 3.768 10 O -0.589 6.589 11 C -0.112 4.112 12 C 0.111 3.889 13 N -0.607 5.607 14 C 0.568 3.432 15 O -0.572 6.572 16 C -0.127 4.127 17 C -0.033 4.033 18 C -0.102 4.102 19 C 0.154 3.846 20 N -0.345 5.345 21 C 0.024 3.976 22 C -0.251 4.251 23 C 0.067 3.933 24 N -0.319 5.319 25 C 0.061 3.939 26 F -0.130 7.130 27 C -0.128 4.128 28 C 0.098 3.902 29 H 0.273 0.727 30 H 0.379 0.621 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.193 0.807 38 H 0.187 0.813 39 H 0.232 0.768 40 H 0.182 0.818 41 H 0.070 0.930 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.864 0.229 13.044 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.162 4.162 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.594 4.594 8 H 0.082 0.918 9 C 0.191 3.809 10 O -0.398 6.398 11 C -0.150 4.150 12 C -0.011 4.011 13 N -0.338 5.338 14 C 0.359 3.641 15 O -0.454 6.454 16 C -0.130 4.130 17 C -0.052 4.052 18 C -0.122 4.122 19 C 0.059 3.941 20 N -0.121 5.121 21 C -0.115 4.115 22 C -0.278 4.278 23 C -0.121 4.121 24 N -0.137 5.137 25 C 0.039 3.961 26 F -0.108 7.108 27 C -0.147 4.147 28 C -0.024 4.024 29 H 0.083 0.917 30 H 0.229 0.771 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.209 0.791 38 H 0.204 0.796 39 H 0.248 0.752 40 H 0.199 0.801 41 H 0.088 0.912 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.357 -2.028 13.141 14.335 hybrid contribution -0.261 2.811 -0.412 2.853 sum -5.618 0.783 12.729 13.935 Atomic orbital electron populations 1.69664 1.06549 1.28652 1.49953 1.25579 0.95748 1.01888 0.93025 0.85639 0.78881 0.79520 0.78143 1.20416 1.20821 1.19574 1.21768 0.93922 0.91072 1.52675 0.91769 1.19745 0.86745 0.93164 0.81205 1.86133 1.51708 1.54650 1.47318 1.22853 0.97115 0.93684 1.01309 1.22373 0.93095 0.95150 0.90441 1.48679 1.50052 1.12048 1.22990 1.17953 0.78695 0.86968 0.80529 1.90710 1.62303 1.15364 1.77016 1.19740 1.03630 0.92852 0.96825 1.21337 0.92544 1.01382 0.89951 1.20849 1.00125 0.89398 1.01815 1.17888 0.96944 0.92050 0.87251 1.45999 1.44506 1.07542 1.14058 1.23880 0.99979 0.84810 1.02877 1.22131 1.08853 1.02756 0.94076 1.24886 0.96396 0.89457 1.01340 1.77396 1.18744 1.25183 0.92339 1.17110 1.05212 0.79586 0.94205 1.91402 1.93075 1.32848 1.93508 1.22957 0.96390 0.93455 1.01910 1.23228 1.00494 0.79275 0.99449 0.91737 0.77059 0.89369 0.89588 0.89803 0.91581 0.81642 0.81260 0.79072 0.79586 0.75192 0.80148 0.91178 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -43.51 10.96 21.45 0.23 -43.27 16 2 C 0.04 1.87 5.27 84.65 0.45 2.31 16 3 Si 0.95 38.89 29.54 68.60 2.03 40.92 16 4 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.56 -26.69 8.11 25.60 0.21 -26.48 16 8 H 0.06 3.07 7.77 -2.91 -0.02 3.04 16 9 C 0.23 10.27 0.85 -10.35 -0.01 10.27 16 10 O -0.59 -27.82 13.08 -148.98 -1.95 -29.77 16 11 C -0.11 -4.19 6.26 32.15 0.20 -3.99 16 12 C 0.11 4.00 6.89 87.02 0.60 4.60 16 13 N -0.61 -23.49 3.33 -828.03 -2.75 -26.25 16 14 C 0.57 21.53 7.80 86.74 0.68 22.21 16 15 O -0.57 -23.29 16.67 -3.94 -0.07 -23.36 16 16 C -0.13 -4.22 5.87 -20.08 -0.12 -4.34 16 17 C -0.03 -0.90 9.58 22.51 0.22 -0.68 16 18 C -0.10 -2.64 9.64 22.33 0.22 -2.43 16 19 C 0.15 4.51 6.70 38.28 0.26 4.76 16 20 N -0.35 -9.53 3.81 -187.13 -0.71 -10.24 16 21 C 0.02 0.58 10.55 83.40 0.88 1.46 16 22 C -0.25 -4.53 10.80 22.01 0.24 -4.30 16 23 C 0.07 1.19 12.02 85.25 1.02 2.21 16 24 N -0.32 -7.94 11.85 -56.97 -0.68 -8.62 16 25 C 0.06 1.96 7.21 22.44 0.16 2.12 16 26 F -0.13 -4.22 13.91 44.97 0.63 -3.59 16 27 C -0.13 -4.41 8.56 22.55 0.19 -4.22 16 28 C 0.10 4.06 3.38 86.73 0.29 4.35 16 29 H 0.27 12.63 8.31 -92.70 -0.77 11.86 16 30 H 0.38 18.32 7.23 -74.06 -0.54 17.78 16 31 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 32 H 0.09 3.07 8.04 -2.38 -0.02 3.05 16 33 H 0.08 2.75 8.09 -2.39 -0.02 2.73 16 34 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.17 4.02 7.66 -2.91 -0.02 4.00 16 36 H 0.17 3.74 7.68 -2.91 -0.02 3.72 16 37 H 0.19 4.49 5.72 -2.91 -0.02 4.47 16 38 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.23 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.18 6.96 2.75 -8.14 -0.02 6.94 16 41 H 0.07 3.04 6.32 -2.39 -0.02 3.02 16 42 H 0.07 2.88 6.67 -2.38 -0.02 2.87 16 Total: -1.00 -57.83 352.58 2.77 -55.07 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: 0.55 Total: 41.25 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.48 Total: 7.86 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -3.91 Total: -88.38 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.01 Total: -53.13 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.63 Total: -3.59 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -57.83 2.77 -55.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771754613.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.213 kcal (2) G-P(sol) polarization free energy of solvation -57.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds