Wall clock time and date at job start Sat Apr 11 2020 07:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.49819 * 2 1 4 4 C 1.53197 * 109.49312 * 239.94472 * 2 1 3 5 5 N 1.46930 * 108.77228 * 185.37737 * 4 2 1 6 6 C 1.36937 * 120.63595 * 233.62774 * 5 4 2 7 7 H 1.08009 * 119.99440 * 27.65417 * 6 5 4 8 8 C 1.38803 * 120.00530 * 207.66636 * 6 5 4 9 9 N 1.31619 * 120.00080 * 17.36290 * 8 6 5 10 10 Si 1.86797 * 120.00079 * 197.36919 * 8 6 5 11 11 H 1.48501 * 109.47213 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47373 * 119.99468 * 10 8 6 13 13 H 1.48498 * 109.47465 * 239.99698 * 10 8 6 14 14 C 1.46935 * 118.73872 * 53.60656 * 5 4 2 15 15 C 1.53192 * 108.77544 * 306.39125 * 14 5 4 16 16 C 1.53034 * 109.52775 * 120.05645 * 2 1 3 17 17 H 1.08999 * 109.48342 * 301.33336 * 16 2 1 18 18 N 1.46494 * 109.43732 * 61.29257 * 16 2 1 19 19 C 1.34773 * 120.00410 * 205.05312 * 18 16 2 20 20 O 1.21571 * 119.99901 * 0.02562 * 19 18 16 21 21 C 1.47714 * 120.00037 * 179.97438 * 19 18 16 22 22 C 1.39993 * 119.96361 * 0.02562 * 21 19 18 23 23 C 1.36606 * 120.46212 * 179.97438 * 22 21 19 24 24 C 1.38808 * 120.20354 * 0.02865 * 23 22 21 25 25 O 1.35181 * 133.64507 * 179.97438 * 24 23 22 26 26 C 1.34400 * 108.24192 * 179.97438 * 25 24 23 27 27 O 1.35177 * 124.90724 * 179.97438 * 26 25 24 28 28 N 1.30580 * 110.18166 * 359.97438 * 26 25 24 29 29 C 1.36221 * 108.68388 * 359.97438 * 28 26 25 30 30 C 1.39214 * 133.66912 * 180.32218 * 29 28 26 31 31 H 1.08996 * 109.46768 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46685 * 300.05516 * 1 2 3 33 33 H 1.08998 * 109.47343 * 60.05853 * 1 2 3 34 34 H 1.08991 * 109.59010 * 65.59232 * 4 2 1 35 35 H 1.09004 * 109.70066 * 305.22954 * 4 2 1 36 36 H 0.97006 * 120.00073 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.58626 * 186.60013 * 14 5 4 38 38 H 1.09003 * 109.58247 * 66.17798 * 14 5 4 39 39 H 1.08992 * 109.49723 * 174.58324 * 15 14 5 40 40 H 1.09006 * 109.49561 * 294.65338 * 15 14 5 41 41 H 0.97007 * 119.99558 * 25.05486 * 18 16 2 42 42 H 1.08002 * 119.77246 * 0.02562 * 22 21 19 43 43 H 1.07997 * 119.89638 * 180.02562 * 23 22 21 44 44 H 0.96703 * 114.00296 * 0.02769 * 27 26 25 45 45 H 1.08000 * 120.26733 * 359.91921 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2500 5 7 3.5046 -0.8279 -1.1705 6 6 4.2932 -0.3767 -2.1951 7 1 3.9454 0.4232 -2.8321 8 6 5.5392 -0.9474 -2.4152 9 7 5.8291 -2.1183 -1.8883 10 14 6.8046 -0.0538 -3.4589 11 1 6.2361 1.2342 -3.9313 12 1 8.0196 0.2092 -2.6466 13 1 7.1640 -0.8946 -4.6290 14 6 4.1060 -1.4254 0.0296 15 6 3.5716 -0.6943 1.2652 16 6 2.0416 -0.7224 1.2484 17 1 1.6595 -0.2238 2.1391 18 7 1.5791 -2.1123 1.2312 19 6 1.4504 -2.7941 2.3866 20 8 1.7176 -2.2555 3.4432 21 6 0.9836 -4.1954 2.3692 22 6 0.6756 -4.8147 1.1520 23 6 0.2435 -6.1104 1.1241 24 6 0.1051 -6.8260 2.3054 25 8 -0.2896 -8.0868 2.5917 26 6 -0.2323 -8.2533 3.9241 27 8 -0.5562 -9.3923 4.5760 28 7 0.1814 -7.1557 4.4978 29 6 0.4119 -6.2201 3.5350 30 6 0.8590 -4.9020 3.5628 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5147 0.8895 33 1 -0.3634 0.5129 -0.8905 34 1 1.7632 -0.1574 -2.1390 35 1 1.6058 -1.7213 -1.3009 36 1 6.7000 -2.5169 -2.0419 37 1 5.1903 -1.3228 -0.0152 38 1 3.8388 -2.4807 0.0854 39 1 3.9347 -1.1889 2.1660 40 1 3.9167 0.3397 1.2536 41 1 1.3656 -2.5420 0.3881 42 1 0.7810 -4.2647 0.2286 43 1 0.0088 -6.5793 0.1799 44 1 -0.8436 -10.1099 3.9950 45 1 1.1004 -4.4288 4.5031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942153714.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:08 Heat of formation + Delta-G solvation = -35.451862 kcal Electronic energy + Delta-G solvation = -30289.377690 eV Core-core repulsion = 26080.471986 eV Total energy + Delta-G solvation = -4208.905704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.47451 -41.46901 -39.76289 -39.10786 -38.18915 -36.04461 -35.87978 -34.01117 -32.85475 -32.23202 -31.66959 -30.36910 -27.34990 -27.10664 -25.56265 -24.52948 -23.74221 -23.06812 -22.77360 -22.19437 -20.77542 -20.06238 -19.25951 -18.79454 -18.54767 -18.39749 -17.06659 -16.78299 -16.64866 -16.33098 -16.17142 -15.65220 -15.46004 -15.34489 -15.15940 -14.96650 -14.82646 -14.64495 -14.55304 -14.28601 -14.04964 -13.56048 -13.48014 -13.11663 -12.94565 -12.75128 -12.66449 -12.49950 -12.33249 -12.23510 -12.12889 -11.92074 -11.63911 -11.61769 -11.44298 -11.12320 -11.01910 -10.50035 -10.15029 -9.87343 -9.49825 -8.62438 -7.83481 -5.27284 -0.44243 -0.37000 0.76319 1.23859 1.47139 1.51026 1.59478 1.72421 1.87921 2.23346 2.53840 2.63860 3.24864 3.31896 3.55497 3.72549 3.76548 3.82582 3.83331 3.94317 4.10013 4.12036 4.18567 4.45232 4.52289 4.65052 4.70569 4.80602 4.82001 4.86677 4.94625 4.99401 5.03728 5.05875 5.07605 5.15225 5.23406 5.31047 5.36854 5.47912 5.55212 5.61024 5.69424 5.77855 5.78970 6.42613 6.54051 6.63557 7.18107 7.18818 7.90937 8.41273 9.22007 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.002655 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.103173 B =10544.642982 C =11392.813224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 H 0.077 0.923 4 C 0.148 3.852 5 N -0.607 5.607 6 C -0.255 4.255 7 H 0.068 0.932 8 C -0.049 4.049 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.266 1.266 12 H -0.297 1.297 13 H -0.294 1.294 14 C 0.187 3.813 15 C -0.145 4.145 16 C 0.167 3.833 17 H 0.079 0.921 18 N -0.695 5.695 19 C 0.560 3.440 20 O -0.576 6.576 21 C -0.126 4.126 22 C -0.063 4.063 23 C -0.071 4.071 24 C 0.020 3.980 25 O -0.231 6.231 26 C 0.454 3.546 27 O -0.381 6.381 28 N -0.517 5.517 29 C 0.021 3.979 30 C -0.020 4.020 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.247 0.753 37 H 0.045 0.955 38 H 0.005 0.995 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.408 0.592 42 H 0.167 0.833 43 H 0.179 0.821 44 H 0.453 0.547 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.315 -10.951 5.302 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 H 0.095 0.905 4 C 0.023 3.977 5 N -0.330 5.330 6 C -0.385 4.385 7 H 0.086 0.914 8 C -0.245 4.245 9 N -0.577 5.577 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.224 1.224 13 H -0.221 1.221 14 C 0.061 3.939 15 C -0.185 4.185 16 C 0.063 3.937 17 H 0.097 0.903 18 N -0.346 5.346 19 C 0.348 3.652 20 O -0.457 6.457 21 C -0.131 4.131 22 C -0.082 4.082 23 C -0.089 4.089 24 C -0.030 4.030 25 O -0.128 6.128 26 C 0.204 3.796 27 O -0.186 6.186 28 N -0.264 5.264 29 C -0.089 4.089 30 C -0.040 4.040 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.247 0.753 42 H 0.184 0.816 43 H 0.196 0.804 44 H 0.316 0.684 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.821 -10.391 7.116 21.013 hybrid contribution 0.993 -0.632 -1.555 1.950 sum -15.827 -11.023 5.561 20.073 Atomic orbital electron populations 1.21711 0.92635 1.02498 1.02395 1.21806 0.96949 0.99717 0.94215 0.90464 1.21114 0.83285 0.97276 0.96040 1.44270 1.01145 1.71514 1.16050 1.19506 0.98689 1.11878 1.08462 0.91387 1.25682 1.01660 0.96106 1.01017 1.70175 1.21707 1.16008 1.49809 0.85337 0.79350 0.78574 0.77952 1.19070 1.22396 1.22074 1.20415 0.97096 0.92666 0.83729 1.22413 0.96493 1.01066 0.98534 1.20802 0.92865 0.81135 0.98917 0.90326 1.45902 1.66110 1.13948 1.08676 1.18253 0.77150 0.85941 0.83833 1.90747 1.52474 1.70610 1.31850 1.19700 1.05160 0.93953 0.94258 1.21108 0.95561 0.94057 0.97459 1.19857 1.00872 0.92623 0.95556 1.20339 1.03070 0.82221 0.97407 1.84487 1.71768 1.30520 1.26017 1.23086 0.91156 0.89442 0.75952 1.85212 1.81928 1.18881 1.32598 1.70835 1.25584 0.99276 1.30745 1.19508 1.05087 0.95577 0.88745 1.20234 0.94946 0.89838 0.98988 0.91983 0.92279 0.91273 0.92173 0.95380 0.94399 0.93632 0.97677 0.93505 0.92001 0.75339 0.81616 0.80360 0.68376 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.06 71.98 0.65 -2.22 16 2 C -0.11 -3.06 2.67 -10.72 -0.03 -3.09 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.15 5.18 5.50 86.36 0.47 5.65 16 5 N -0.61 -27.91 3.00 -699.06 -2.09 -30.01 16 6 C -0.26 -13.24 9.58 84.03 0.81 -12.44 16 7 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 8 C -0.05 -2.65 4.91 84.86 0.42 -2.24 16 9 N -0.93 -53.44 11.19 21.65 0.24 -53.20 16 10 Si 0.96 43.92 29.59 68.60 2.03 45.95 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 14 C 0.19 8.68 5.05 86.36 0.44 9.11 16 15 C -0.14 -5.63 5.77 30.67 0.18 -5.46 16 16 C 0.17 5.32 2.22 45.02 0.10 5.42 16 17 H 0.08 2.53 7.57 -2.39 -0.02 2.51 16 18 N -0.69 -20.12 3.55 -445.42 -1.58 -21.70 16 19 C 0.56 17.59 7.73 86.75 0.67 18.26 16 20 O -0.58 -22.10 15.99 -3.94 -0.06 -22.16 16 21 C -0.13 -3.34 5.87 -20.10 -0.12 -3.45 16 22 C -0.06 -1.25 9.47 22.31 0.21 -1.04 16 23 C -0.07 -1.22 9.99 22.02 0.22 -1.00 16 24 C 0.02 0.43 7.42 22.95 0.17 0.60 16 25 O -0.23 -4.14 10.78 9.96 0.11 -4.03 16 26 C 0.45 8.59 9.53 130.43 1.24 9.83 16 27 O -0.38 -3.82 13.62 -62.29 -0.85 -4.67 16 28 N -0.52 -13.96 11.38 -422.85 -4.81 -18.77 16 29 C 0.02 0.56 7.22 39.24 0.28 0.85 16 30 C -0.02 -0.56 9.64 22.75 0.22 -0.34 16 31 H 0.06 1.20 7.53 -2.39 -0.02 1.18 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 2.07 7.93 -2.39 -0.02 2.06 16 35 H 0.03 0.91 6.65 -2.38 -0.02 0.90 16 36 H 0.25 13.89 8.31 -92.70 -0.77 13.12 16 37 H 0.05 2.49 6.03 -2.39 -0.01 2.47 16 38 H 0.01 0.25 7.74 -2.39 -0.02 0.23 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 41 H 0.41 10.42 4.74 -92.70 -0.44 9.99 16 42 H 0.17 2.58 6.37 -2.91 -0.02 2.57 16 43 H 0.18 1.81 8.06 -2.91 -0.02 1.78 16 44 H 0.45 -1.92 9.06 -74.06 -0.67 -2.59 16 45 H 0.14 4.14 7.64 -2.91 -0.02 4.12 16 Total: -1.00 -74.94 368.29 -1.13 -76.07 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -0.05 Total: 14.07 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 5.93 Total: 18.45 kcal Atomic # 7 Polarization: -115.43 SS G_CDS: -8.24 Total: -123.67 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.80 Total: -30.87 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -74.94 -1.13 -76.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942153714.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.617 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds