Wall clock time and date at job start Sat Apr 11 2020 07:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.50173 * 2 1 4 4 C 1.53197 * 109.49612 * 120.06820 * 2 1 3 5 5 N 1.46937 * 108.77307 * 174.55310 * 4 2 1 6 6 C 1.36940 * 120.60477 * 126.41848 * 5 4 2 7 7 H 1.07998 * 119.99430 * 332.82141 * 6 5 4 8 8 C 1.38806 * 119.99670 * 152.81600 * 6 5 4 9 9 N 1.31626 * 119.99658 * 159.75330 * 8 6 5 10 10 Si 1.86795 * 120.00321 * 339.75684 * 8 6 5 11 11 H 1.48496 * 109.47295 * 94.89833 * 10 8 6 12 12 H 1.48500 * 109.46986 * 214.89623 * 10 8 6 13 13 H 1.48498 * 109.47194 * 334.89588 * 10 8 6 14 14 C 1.46927 * 118.76631 * 306.44423 * 5 4 2 15 15 C 1.53200 * 108.77477 * 53.58558 * 14 5 4 16 16 C 1.53041 * 109.49933 * 239.93323 * 2 1 3 17 17 H 1.09002 * 109.45965 * 58.68180 * 16 2 1 18 18 N 1.46499 * 109.46333 * 298.70954 * 16 2 1 19 19 C 1.34771 * 120.00067 * 155.00390 * 18 16 2 20 20 O 1.21683 * 120.00461 * 359.97438 * 19 18 16 21 21 C 1.46845 * 120.00089 * 180.02562 * 19 18 16 22 22 C 1.42392 * 128.40824 * 0.02562 * 21 19 18 23 23 N 1.29898 * 106.48412 * 180.02562 * 22 21 19 24 24 O 1.20724 * 112.91089 * 0.02562 * 23 22 21 25 25 C 1.34455 * 111.91346 * 359.71855 * 24 23 22 26 26 C 1.46431 * 127.24512 * 180.33681 * 25 24 23 27 27 C 1.36671 * 125.99455 * 0.12503 * 26 25 24 28 28 C 1.40441 * 106.69991 * 179.97438 * 27 26 25 29 29 C 1.35078 * 107.12343 * 359.97438 * 28 27 26 30 30 O 1.34087 * 108.77828 * 359.77071 * 29 28 27 31 31 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46805 * 60.00075 * 1 2 3 33 33 H 1.08995 * 109.47705 * 299.99891 * 1 2 3 34 34 H 1.08999 * 109.58184 * 294.37487 * 4 2 1 35 35 H 1.08995 * 109.58830 * 54.79528 * 4 2 1 36 36 H 0.97000 * 119.99695 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.58252 * 293.80484 * 14 5 4 38 38 H 1.08990 * 109.58633 * 173.37066 * 14 5 4 39 39 H 1.08994 * 109.49792 * 185.41705 * 15 14 5 40 40 H 1.08993 * 109.52330 * 65.33525 * 15 14 5 41 41 H 0.97000 * 119.99635 * 334.99551 * 18 16 2 42 42 H 1.08001 * 126.76229 * 0.03992 * 22 21 19 43 43 H 1.07996 * 126.64979 * 359.92910 * 27 26 25 44 44 H 1.08003 * 126.43470 * 179.97438 * 28 27 26 45 45 H 1.08003 * 125.60656 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7236 1.2498 5 7 3.5046 -0.8296 1.1694 6 6 4.2935 -0.3796 2.1943 7 1 3.9433 0.4149 2.8365 8 6 5.5433 -0.9448 2.4076 9 7 6.4532 -0.2890 3.0964 10 14 5.9338 -2.6359 1.7171 11 1 6.6137 -2.4900 0.4050 12 1 6.8246 -3.3612 2.6582 13 1 4.6736 -3.4011 1.5391 14 6 4.1053 -1.4268 -0.0311 15 6 3.5709 -0.6947 -1.2662 16 6 2.0408 -0.7228 -1.2485 17 1 1.6584 -0.2237 -2.1390 18 7 1.5783 -2.1127 -1.2315 19 6 1.4503 -2.7946 -2.3869 20 8 1.7185 -2.2556 -3.4444 21 6 0.9861 -4.1876 -2.3699 22 6 0.6248 -4.9860 -1.2476 23 7 0.2799 -6.1471 -1.7169 24 8 0.3626 -6.2113 -2.9196 25 6 0.7868 -5.0535 -3.4559 26 6 0.9980 -4.7589 -4.8746 27 6 0.7946 -5.6233 -5.9135 28 6 1.1192 -4.9258 -7.0884 29 6 1.5006 -3.6832 -6.7207 30 8 1.4211 -3.5846 -5.3859 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8899 34 1 1.7636 -0.1574 2.1389 35 1 1.6051 -1.7213 1.2985 36 1 7.3264 -0.6841 3.2458 37 1 3.8374 -2.4819 -0.0874 38 1 5.1895 -1.3247 0.0135 39 1 3.9334 -1.1890 -2.1674 40 1 3.9159 0.3391 -1.2545 41 1 1.3643 -2.5423 -0.3885 42 1 0.6351 -4.6854 -0.2103 43 1 0.4515 -6.6450 -5.8443 44 1 1.0725 -5.3106 -8.0965 45 1 1.8145 -2.8974 -7.3919 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942187760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:19 Heat of formation + Delta-G solvation = 77.923591 kcal Electronic energy + Delta-G solvation = -31133.835239 eV Core-core repulsion = 26929.845863 eV Total energy + Delta-G solvation = -4203.989376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.24461 -42.74288 -40.03342 -37.88918 -34.53636 -34.30336 -33.56577 -32.78101 -32.57521 -31.60016 -30.43181 -29.04347 -26.49465 -25.69738 -24.67314 -23.67685 -22.24396 -21.77222 -21.58360 -21.33446 -20.46192 -19.04765 -18.86645 -18.08885 -17.70352 -16.82505 -16.31990 -16.13764 -15.71219 -15.22994 -15.16795 -14.92076 -14.51713 -14.26222 -13.87763 -13.60864 -13.49782 -13.47291 -13.15454 -13.05646 -12.69591 -12.56876 -12.30633 -11.93392 -11.79904 -11.66440 -11.56399 -11.32069 -10.89877 -10.71218 -10.64253 -10.59069 -10.25303 -10.13655 -10.01017 -9.96061 -9.72735 -9.52426 -8.89799 -8.63133 -8.42197 -7.02987 -5.99128 -3.35755 0.12316 1.55156 1.74638 1.79678 2.36227 3.05390 3.25499 3.30139 3.44699 3.46345 3.51206 3.90435 3.99765 4.35366 4.48727 4.61682 4.62769 4.85023 4.88879 4.91841 5.06495 5.19661 5.28273 5.39464 5.43744 5.47039 5.50444 5.64316 5.66423 5.80148 5.83376 5.92224 5.98477 6.07665 6.10982 6.21694 6.30956 6.38306 6.53349 6.59226 6.63717 6.70022 6.77933 6.88264 7.56292 7.76824 7.90602 8.25161 8.28093 8.88530 9.67350 10.03717 11.16714 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.003383 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.800270 B = 8275.538462 C = 8545.113777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.088 0.912 4 C 0.155 3.845 5 N -0.605 5.605 6 C -0.261 4.261 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.907 5.907 10 Si 0.883 3.117 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.129 3.871 15 C -0.147 4.147 16 C 0.163 3.837 17 H 0.082 0.918 18 N -0.706 5.706 19 C 0.587 3.413 20 O -0.518 6.518 21 C -0.232 4.232 22 C 0.034 3.966 23 N -0.354 5.354 24 O 0.122 5.878 25 C 0.107 3.893 26 C 0.025 3.975 27 C -0.150 4.150 28 C -0.228 4.228 29 C -0.003 4.003 30 O -0.109 6.109 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.017 0.983 36 H 0.263 0.737 37 H 0.024 0.976 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.399 0.601 42 H 0.204 0.796 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.526 -7.840 -17.217 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.107 0.893 4 C 0.028 3.972 5 N -0.328 5.328 6 C -0.389 4.389 7 H 0.104 0.896 8 C -0.174 4.174 9 N -0.550 5.550 10 Si 0.714 3.286 11 H -0.218 1.218 12 H -0.232 1.232 13 H -0.196 1.196 14 C 0.003 3.997 15 C -0.187 4.187 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.357 5.357 19 C 0.372 3.628 20 O -0.395 6.395 21 C -0.239 4.239 22 C -0.145 4.145 23 N -0.057 5.057 24 O 0.058 5.942 25 C 0.041 3.959 26 C -0.026 4.026 27 C -0.170 4.170 28 C -0.247 4.247 29 C -0.074 4.074 30 O -0.001 6.001 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.235 0.765 42 H 0.221 0.779 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.509 -8.294 -17.069 23.889 hybrid contribution 0.605 -0.637 -0.094 0.884 sum -13.904 -8.931 -17.163 23.826 Atomic orbital electron populations 1.21762 0.95364 1.01400 1.01466 1.21955 0.94915 1.01084 0.96093 0.89342 1.20937 0.84513 0.96423 0.95278 1.44362 1.00592 1.71979 1.15894 1.18905 0.97788 1.14219 1.08015 0.89614 1.25256 0.96431 0.98005 0.97714 1.69833 1.04531 1.37144 1.43505 0.86951 0.77707 0.86903 0.77060 1.21794 1.23191 1.19647 1.21281 0.97962 0.94561 0.85868 1.22402 0.94631 1.02400 0.99260 1.20940 0.94497 0.80016 0.98662 0.89998 1.45930 1.67179 1.14485 1.08156 1.16639 0.78151 0.83276 0.84685 1.90865 1.49882 1.68778 1.29949 1.21686 1.12229 0.98120 0.91890 1.25061 0.98840 0.88847 1.01779 1.73521 1.20173 1.21681 0.90347 1.84930 1.62599 1.30998 1.15685 1.21015 0.97841 0.86112 0.90943 1.17997 1.09648 0.86667 0.88326 1.22022 1.03209 1.00799 0.91013 1.21778 1.08142 0.94740 1.00019 1.24570 1.01764 0.99578 0.81526 1.84521 1.63840 1.31315 1.20458 0.93109 0.93050 0.92442 0.91387 0.96570 0.92737 0.95814 0.91123 0.92148 0.90600 0.76483 0.77948 0.82373 0.82663 0.77296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.05 37.15 0.34 -1.32 16 2 C -0.12 -1.75 2.67 -90.50 -0.24 -1.99 16 3 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 4 C 0.15 2.71 5.50 -3.70 -0.02 2.69 16 5 N -0.60 -13.49 2.77 -172.31 -0.48 -13.97 16 6 C -0.26 -7.03 10.04 -15.06 -0.15 -7.19 16 7 H 0.09 2.46 8.05 -52.49 -0.42 2.04 16 8 C 0.02 0.71 5.24 -17.43 -0.09 0.62 16 9 N -0.91 -27.50 13.97 55.49 0.78 -26.72 16 10 Si 0.88 22.29 24.35 -169.99 -4.14 18.15 16 11 H -0.29 -7.23 6.70 56.52 0.38 -6.85 16 12 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 13 H -0.27 -6.62 6.45 56.52 0.36 -6.25 16 14 C 0.13 2.74 3.93 -3.71 -0.01 2.72 16 15 C -0.15 -2.63 5.77 -26.60 -0.15 -2.78 16 16 C 0.16 2.48 2.21 -67.89 -0.15 2.33 16 17 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 18 N -0.71 -10.05 3.59 -55.02 -0.20 -10.25 16 19 C 0.59 8.90 7.76 -12.78 -0.10 8.80 16 20 O -0.52 -9.01 13.57 -18.27 -0.25 -9.26 16 21 C -0.23 -3.13 6.37 -104.04 -0.66 -3.80 16 22 C 0.03 0.40 11.67 -16.77 -0.20 0.20 16 23 N -0.35 -4.44 11.97 30.86 0.37 -4.07 16 24 O 0.12 1.47 11.18 16.11 0.18 1.65 16 25 C 0.11 1.38 7.41 -35.50 -0.26 1.11 16 26 C 0.03 0.31 7.08 -36.85 -0.26 0.05 16 27 C -0.15 -1.44 10.86 -39.32 -0.43 -1.86 16 28 C -0.23 -1.86 10.88 -39.88 -0.43 -2.29 16 29 C 0.00 -0.03 12.08 29.61 0.36 0.33 16 30 O -0.11 -1.45 7.67 -18.80 -0.14 -1.59 16 31 H 0.05 0.56 7.53 -51.93 -0.39 0.17 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 35 H 0.02 0.27 6.64 -51.93 -0.34 -0.08 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 37 H 0.02 0.51 6.58 -51.93 -0.34 0.17 16 38 H 0.07 1.70 4.49 -51.93 -0.23 1.46 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.40 5.20 5.95 -40.82 -0.24 4.96 16 42 H 0.20 1.81 7.74 -52.49 -0.41 1.40 16 43 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.21 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -33.11 363.56 -6.64 -39.75 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.77 Total: 3.20 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.47 Total: -2.38 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: 0.47 Total: -55.01 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.21 Total: -9.20 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.11 -6.64 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942187760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.673 kcal (2) G-P(sol) polarization free energy of solvation -33.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds