Wall clock time and date at job start Sat Apr 11 2020 07:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.50173 * 2 1 4 4 C 1.53197 * 109.49612 * 120.06820 * 2 1 3 5 5 N 1.46937 * 108.77307 * 174.55310 * 4 2 1 6 6 C 1.36940 * 120.60477 * 126.41848 * 5 4 2 7 7 H 1.07998 * 119.99430 * 332.82141 * 6 5 4 8 8 C 1.38806 * 119.99670 * 152.81600 * 6 5 4 9 9 N 1.31626 * 119.99658 * 159.75330 * 8 6 5 10 10 Si 1.86795 * 120.00321 * 339.75684 * 8 6 5 11 11 H 1.48496 * 109.47295 * 94.89833 * 10 8 6 12 12 H 1.48500 * 109.46986 * 214.89623 * 10 8 6 13 13 H 1.48498 * 109.47194 * 334.89588 * 10 8 6 14 14 C 1.46927 * 118.76631 * 306.44423 * 5 4 2 15 15 C 1.53200 * 108.77477 * 53.58558 * 14 5 4 16 16 C 1.53041 * 109.49933 * 239.93323 * 2 1 3 17 17 H 1.09002 * 109.45965 * 58.68180 * 16 2 1 18 18 N 1.46499 * 109.46333 * 298.70954 * 16 2 1 19 19 C 1.34771 * 120.00067 * 155.00390 * 18 16 2 20 20 O 1.21683 * 120.00461 * 359.97438 * 19 18 16 21 21 C 1.46845 * 120.00089 * 180.02562 * 19 18 16 22 22 C 1.42392 * 128.40824 * 0.02562 * 21 19 18 23 23 N 1.29898 * 106.48412 * 180.02562 * 22 21 19 24 24 O 1.20724 * 112.91089 * 0.02562 * 23 22 21 25 25 C 1.34455 * 111.91346 * 359.71855 * 24 23 22 26 26 C 1.46431 * 127.24512 * 180.33681 * 25 24 23 27 27 C 1.36671 * 125.99455 * 0.12503 * 26 25 24 28 28 C 1.40441 * 106.69991 * 179.97438 * 27 26 25 29 29 C 1.35078 * 107.12343 * 359.97438 * 28 27 26 30 30 O 1.34087 * 108.77828 * 359.77071 * 29 28 27 31 31 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46805 * 60.00075 * 1 2 3 33 33 H 1.08995 * 109.47705 * 299.99891 * 1 2 3 34 34 H 1.08999 * 109.58184 * 294.37487 * 4 2 1 35 35 H 1.08995 * 109.58830 * 54.79528 * 4 2 1 36 36 H 0.97000 * 119.99695 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.58252 * 293.80484 * 14 5 4 38 38 H 1.08990 * 109.58633 * 173.37066 * 14 5 4 39 39 H 1.08994 * 109.49792 * 185.41705 * 15 14 5 40 40 H 1.08993 * 109.52330 * 65.33525 * 15 14 5 41 41 H 0.97000 * 119.99635 * 334.99551 * 18 16 2 42 42 H 1.08001 * 126.76229 * 0.03992 * 22 21 19 43 43 H 1.07996 * 126.64979 * 359.92910 * 27 26 25 44 44 H 1.08003 * 126.43470 * 179.97438 * 28 27 26 45 45 H 1.08003 * 125.60656 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7236 1.2498 5 7 3.5046 -0.8296 1.1694 6 6 4.2935 -0.3796 2.1943 7 1 3.9433 0.4149 2.8365 8 6 5.5433 -0.9448 2.4076 9 7 6.4532 -0.2890 3.0964 10 14 5.9338 -2.6359 1.7171 11 1 6.6137 -2.4900 0.4050 12 1 6.8246 -3.3612 2.6582 13 1 4.6736 -3.4011 1.5391 14 6 4.1053 -1.4268 -0.0311 15 6 3.5709 -0.6947 -1.2662 16 6 2.0408 -0.7228 -1.2485 17 1 1.6584 -0.2237 -2.1390 18 7 1.5783 -2.1127 -1.2315 19 6 1.4503 -2.7946 -2.3869 20 8 1.7185 -2.2556 -3.4444 21 6 0.9861 -4.1876 -2.3699 22 6 0.6248 -4.9860 -1.2476 23 7 0.2799 -6.1471 -1.7169 24 8 0.3626 -6.2113 -2.9196 25 6 0.7868 -5.0535 -3.4559 26 6 0.9980 -4.7589 -4.8746 27 6 0.7946 -5.6233 -5.9135 28 6 1.1192 -4.9258 -7.0884 29 6 1.5006 -3.6832 -6.7207 30 8 1.4211 -3.5846 -5.3859 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8899 34 1 1.7636 -0.1574 2.1389 35 1 1.6051 -1.7213 1.2985 36 1 7.3264 -0.6841 3.2458 37 1 3.8374 -2.4819 -0.0874 38 1 5.1895 -1.3247 0.0135 39 1 3.9334 -1.1890 -2.1674 40 1 3.9159 0.3391 -1.2545 41 1 1.3643 -2.5423 -0.3885 42 1 0.6351 -4.6854 -0.2103 43 1 0.4515 -6.6450 -5.8443 44 1 1.0725 -5.3106 -8.0965 45 1 1.8145 -2.8974 -7.3919 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942187760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:18 Heat of formation + Delta-G solvation = 57.388779 kcal Electronic energy + Delta-G solvation = -31134.725695 eV Core-core repulsion = 26929.845863 eV Total energy + Delta-G solvation = -4204.879832 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.14277 -43.50289 -41.28386 -39.25419 -36.10811 -35.30499 -34.38778 -33.95113 -33.55353 -33.38484 -31.96983 -29.86428 -27.80218 -27.26696 -25.87920 -24.55626 -23.63144 -23.20178 -22.61134 -22.25580 -21.43831 -20.27998 -19.87929 -18.99616 -18.81425 -18.60607 -17.31492 -17.10470 -16.95216 -16.70931 -16.33772 -16.11223 -15.90027 -15.41564 -15.22969 -15.04394 -14.92531 -14.69089 -14.21514 -13.90157 -13.80738 -13.71675 -13.47542 -13.43159 -13.19458 -12.93350 -12.83040 -12.79843 -12.26451 -12.10147 -11.91739 -11.80358 -11.67430 -11.56050 -11.43356 -11.28846 -11.12048 -10.85068 -10.73626 -10.07327 -9.23330 -8.92438 -8.17344 -5.48246 -0.77139 0.63334 0.91333 1.01270 1.28057 1.37231 1.45161 1.64592 1.99194 2.17554 2.39564 2.70729 3.01877 3.04405 3.13761 3.33313 3.42524 3.70911 3.87404 3.92909 3.97901 4.06990 4.08621 4.15385 4.22802 4.41129 4.54249 4.58313 4.62605 4.74220 4.75692 4.87936 4.90364 4.92292 4.95323 4.97446 5.03452 5.15246 5.22647 5.31476 5.44104 5.46661 5.57198 5.86473 6.05410 6.13086 6.45456 6.86169 6.90713 7.13309 7.61939 8.02043 9.02487 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013577 B = 0.003383 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.800270 B = 8275.538462 C = 8545.113777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 H 0.079 0.921 4 C 0.149 3.851 5 N -0.616 5.616 6 C -0.241 4.241 7 H 0.058 0.942 8 C -0.033 4.033 9 N -0.957 5.957 10 Si 0.940 3.060 11 H -0.290 1.290 12 H -0.314 1.314 13 H -0.254 1.254 14 C 0.130 3.870 15 C -0.139 4.139 16 C 0.172 3.828 17 H 0.088 0.912 18 N -0.700 5.700 19 C 0.590 3.410 20 O -0.544 6.544 21 C -0.261 4.261 22 C 0.046 3.954 23 N -0.369 5.369 24 O 0.121 5.879 25 C 0.115 3.885 26 C -0.020 4.020 27 C -0.134 4.134 28 C -0.226 4.226 29 C -0.005 4.005 30 O -0.143 6.143 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.042 0.958 36 H 0.260 0.740 37 H 0.031 0.969 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.407 0.593 42 H 0.229 0.771 43 H 0.180 0.820 44 H 0.188 0.812 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.729 -9.309 -19.362 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 H 0.097 0.903 4 C 0.025 3.975 5 N -0.340 5.340 6 C -0.370 4.370 7 H 0.076 0.924 8 C -0.228 4.228 9 N -0.604 5.604 10 Si 0.770 3.230 11 H -0.217 1.217 12 H -0.243 1.243 13 H -0.178 1.178 14 C 0.005 3.995 15 C -0.179 4.179 16 C 0.067 3.933 17 H 0.106 0.894 18 N -0.352 5.352 19 C 0.376 3.624 20 O -0.423 6.423 21 C -0.268 4.268 22 C -0.133 4.133 23 N -0.074 5.074 24 O 0.060 5.940 25 C 0.049 3.951 26 C -0.071 4.071 27 C -0.154 4.154 28 C -0.244 4.244 29 C -0.075 4.075 30 O -0.037 6.037 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.244 0.756 42 H 0.246 0.754 43 H 0.198 0.802 44 H 0.205 0.795 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -16.780 -9.799 -19.247 27.350 hybrid contribution 1.231 -0.124 0.415 1.305 sum -15.549 -9.923 -18.832 26.361 Atomic orbital electron populations 1.21697 0.92481 1.02509 1.02500 1.21801 0.97117 0.99876 0.94011 0.90309 1.21182 0.81584 0.98099 0.96683 1.44459 1.02406 1.71984 1.15171 1.18886 0.97807 1.12545 1.07782 0.92380 1.25823 0.96750 1.01063 0.99146 1.69957 1.05090 1.38720 1.46588 0.86014 0.77879 0.83067 0.76011 1.21726 1.24283 1.17767 1.21220 0.96312 0.95248 0.86761 1.22287 0.96778 1.01436 0.97402 1.20782 0.92390 0.80901 0.99206 0.89422 1.45808 1.66995 1.13977 1.08414 1.16801 0.77500 0.83770 0.84307 1.90850 1.51060 1.69500 1.30844 1.21566 1.14533 0.97730 0.92949 1.25414 0.97367 0.88047 1.02475 1.73501 1.21226 1.22182 0.90524 1.84923 1.62756 1.30685 1.15659 1.21287 0.96281 0.86028 0.91487 1.18250 1.12676 0.87499 0.88653 1.22455 1.00856 1.01330 0.90778 1.22194 1.07103 0.94125 1.01003 1.25396 1.00498 1.01010 0.80591 1.84488 1.64744 1.32162 1.22261 0.91966 0.92074 0.91426 0.91822 0.94006 0.93109 0.95117 0.94129 0.92214 0.91224 0.75624 0.75436 0.80247 0.79493 0.74297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.05 71.98 0.65 -2.04 16 2 C -0.11 -2.91 2.67 -10.72 -0.03 -2.93 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C 0.15 4.94 5.50 86.36 0.48 5.41 16 5 N -0.62 -27.01 2.77 -699.06 -1.94 -28.95 16 6 C -0.24 -13.13 10.04 84.03 0.84 -12.28 16 7 H 0.06 3.44 8.05 -2.91 -0.02 3.42 16 8 C -0.03 -1.92 5.24 84.86 0.44 -1.47 16 9 N -0.96 -59.91 13.97 21.65 0.30 -59.61 16 10 Si 0.94 46.69 24.35 68.60 1.67 48.36 16 11 H -0.29 -14.19 6.70 99.48 0.67 -13.52 16 12 H -0.31 -15.95 7.11 99.48 0.71 -15.24 16 13 H -0.25 -11.68 6.45 99.48 0.64 -11.03 16 14 C 0.13 5.40 3.93 86.36 0.34 5.74 16 15 C -0.14 -4.84 5.77 30.68 0.18 -4.67 16 16 C 0.17 4.90 2.21 45.02 0.10 5.00 16 17 H 0.09 2.50 7.58 -2.39 -0.02 2.48 16 18 N -0.70 -18.34 3.59 -446.21 -1.60 -19.95 16 19 C 0.59 16.99 7.76 86.50 0.67 17.66 16 20 O -0.54 -18.44 13.57 18.15 0.25 -18.20 16 21 C -0.26 -6.68 6.37 -19.48 -0.12 -6.80 16 22 C 0.05 0.98 11.67 86.01 1.00 1.99 16 23 N -0.37 -8.66 11.97 -56.73 -0.68 -9.34 16 24 O 0.12 2.78 11.18 67.88 0.76 3.54 16 25 C 0.12 2.85 7.41 24.91 0.18 3.04 16 26 C -0.02 -0.48 7.08 24.04 0.17 -0.31 16 27 C -0.13 -2.26 10.86 22.44 0.24 -2.02 16 28 C -0.23 -3.00 10.88 22.08 0.24 -2.76 16 29 C 0.00 -0.08 12.08 67.09 0.81 0.73 16 30 O -0.14 -3.65 7.67 16.26 0.12 -3.53 16 31 H 0.06 1.13 7.53 -2.38 -0.02 1.11 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 35 H 0.04 1.21 6.64 -2.39 -0.02 1.20 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.03 1.25 6.58 -2.39 -0.02 1.23 16 38 H 0.04 1.94 4.49 -2.39 -0.01 1.93 16 39 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.41 9.35 5.95 -92.71 -0.55 8.80 16 42 H 0.23 3.36 7.74 -2.91 -0.02 3.34 16 43 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 45 H 0.24 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -73.85 363.56 5.47 -68.38 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.38 Total: 14.99 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.20 Total: 4.29 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -3.92 Total: -117.84 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 1.13 Total: -18.19 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.67 Total: 48.36 kcal Total: -73.85 5.47 -68.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942187760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.772 kcal (2) G-P(sol) polarization free energy of solvation -73.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds