Wall clock time and date at job start Sat Apr 11 2020 07:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50120 * 2 1 4 4 C 1.53190 * 109.52272 * 239.91803 * 2 1 3 5 5 N 1.46930 * 108.77935 * 185.39942 * 4 2 1 6 6 C 1.36938 * 120.63092 * 233.59278 * 5 4 2 7 7 H 1.08002 * 120.00133 * 27.67314 * 6 5 4 8 8 C 1.38807 * 119.99614 * 207.68040 * 6 5 4 9 9 N 1.31615 * 120.00661 * 17.36470 * 8 6 5 10 10 Si 1.86802 * 119.99963 * 197.36201 * 8 6 5 11 11 H 1.48497 * 109.46944 * 89.99787 * 10 8 6 12 12 H 1.48493 * 109.47456 * 210.00113 * 10 8 6 13 13 H 1.48505 * 109.47138 * 330.00206 * 10 8 6 14 14 C 1.46922 * 118.73672 * 53.60309 * 5 4 2 15 15 C 1.53164 * 108.77072 * 306.39589 * 14 5 4 16 16 C 1.53039 * 109.32821 * 54.64724 * 15 14 5 17 17 H 1.08997 * 109.46415 * 178.61545 * 16 15 14 18 18 N 1.46496 * 109.46129 * 58.63690 * 16 15 14 19 19 C 1.34783 * 119.99841 * 84.97564 * 18 16 15 20 20 O 1.21494 * 119.99556 * 359.97438 * 19 18 16 21 21 C 1.48339 * 119.99900 * 179.97438 * 19 18 16 22 22 C 1.41723 * 126.81141 * 180.24350 * 21 19 18 23 23 C 1.37152 * 103.79713 * 180.15492 * 22 21 19 24 24 C 1.47016 * 126.85868 * 179.97438 * 23 22 21 25 25 C 1.36340 * 125.96510 * 179.70970 * 24 23 22 26 26 C 1.40696 * 106.72008 * 179.97438 * 25 24 23 27 27 C 1.34897 * 107.08096 * 0.24291 * 26 25 24 28 28 O 1.34221 * 108.73018 * 359.60456 * 27 26 25 29 29 O 1.34579 * 106.28172 * 359.66977 * 23 22 21 30 30 N 1.20868 * 111.69185 * 0.22531 * 29 23 22 31 31 H 1.08998 * 109.47249 * 299.93380 * 1 2 3 32 32 H 1.08993 * 109.47325 * 59.93395 * 1 2 3 33 33 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58924 * 305.18465 * 4 2 1 35 35 H 1.08998 * 109.59120 * 65.60919 * 4 2 1 36 36 H 0.96993 * 120.00778 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.58789 * 66.18484 * 14 5 4 38 38 H 1.09006 * 109.58828 * 186.61249 * 14 5 4 39 39 H 1.09001 * 109.50632 * 294.68166 * 15 14 5 40 40 H 1.09001 * 109.48122 * 174.59327 * 15 14 5 41 41 H 0.97001 * 120.00422 * 264.97593 * 18 16 15 42 42 H 1.08007 * 128.10083 * 0.08567 * 22 21 19 43 43 H 1.08005 * 126.63958 * 359.94393 * 25 24 23 44 44 H 1.07994 * 126.46450 * 179.97438 * 26 25 24 45 45 H 1.08001 * 125.63344 * 179.76109 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5053 -0.8284 -1.1690 6 6 4.2943 -0.3783 -2.1937 7 1 3.9472 0.4212 -2.8315 8 6 5.5402 -0.9497 -2.4128 9 7 5.8295 -2.1202 -1.8850 10 14 6.8064 -0.0575 -3.4570 11 1 7.6357 0.8170 -2.5895 12 1 7.6771 -1.0508 -4.1355 13 1 6.1128 0.7706 -4.4761 14 6 4.1059 -1.4256 0.0315 15 6 3.5709 -0.6940 1.2662 16 6 2.0408 -0.7228 1.2486 17 1 1.6579 -0.2241 2.1389 18 7 1.5790 -2.1129 1.2310 19 6 1.4504 -2.7949 2.3864 20 8 1.7179 -2.2569 3.4424 21 6 0.9822 -4.2024 2.3687 22 6 0.7913 -5.0480 3.4899 23 6 0.3599 -6.2280 2.9399 24 6 0.0107 -7.4611 3.6603 25 6 -0.4222 -8.6236 3.0946 26 6 -0.6351 -9.5316 4.1481 27 6 -0.3314 -8.8876 5.2938 28 8 0.0631 -7.6399 4.9953 29 8 0.3134 -6.0296 1.6096 30 7 0.6590 -4.9100 1.3126 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6064 -1.7217 -1.2978 35 1 1.7644 -0.1581 -2.1388 36 1 6.6999 -2.5196 -2.0384 37 1 3.8386 -2.4808 0.0876 38 1 5.1902 -1.3229 -0.0127 39 1 3.9154 0.3401 1.2543 40 1 3.9336 -1.1884 2.1673 41 1 1.3658 -2.5426 0.3879 42 1 0.9498 -4.8175 4.5331 43 1 -0.5730 -8.8111 2.0417 44 1 -0.9811 -10.5506 4.0571 45 1 -0.3929 -9.3074 6.2869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942542433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:37 Heat of formation + Delta-G solvation = 70.548986 kcal Electronic energy + Delta-G solvation = -30035.023211 eV Core-core repulsion = 25830.714048 eV Total energy + Delta-G solvation = -4204.309162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.24668 -42.95643 -39.91400 -37.71894 -34.34537 -34.25643 -33.73423 -33.05851 -32.38496 -31.13449 -30.04412 -29.10389 -26.08606 -25.57806 -24.56470 -23.67482 -22.55997 -21.89754 -21.71839 -21.12546 -20.21006 -19.02502 -18.62536 -18.06884 -17.02832 -16.96573 -16.64742 -16.41727 -15.42800 -15.23713 -14.91989 -14.75851 -14.24546 -14.05090 -13.85273 -13.75712 -13.36837 -13.33478 -13.18539 -12.97856 -12.81371 -12.58136 -12.15643 -11.88073 -11.51852 -11.39375 -11.10677 -10.86464 -10.85568 -10.72471 -10.64140 -10.37181 -10.30099 -10.23708 -10.11720 -10.04096 -9.76897 -9.45876 -8.72339 -8.54908 -8.47453 -6.70232 -5.80117 -3.23372 0.34354 1.20489 1.69540 1.78900 2.37230 3.03726 3.25134 3.33736 3.37337 3.44299 3.45278 3.81337 4.12195 4.47661 4.49486 4.53637 4.67785 4.94759 5.03569 5.16856 5.28942 5.34109 5.36675 5.40987 5.47291 5.52646 5.57116 5.62044 5.83681 5.94952 5.96587 6.05839 6.12499 6.25061 6.29298 6.42006 6.53535 6.57368 6.63225 6.71423 6.87750 6.89640 7.34188 7.56461 7.65016 7.78217 7.82549 8.25302 8.42339 9.18685 9.81959 10.37984 11.27958 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002499 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.335890 B =11202.449139 C =12072.184388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.119 4.119 3 H 0.085 0.915 4 C 0.150 3.850 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.901 5.901 10 Si 0.903 3.097 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.173 3.827 15 C -0.155 4.155 16 C 0.159 3.841 17 H 0.077 0.923 18 N -0.691 5.691 19 C 0.596 3.404 20 O -0.529 6.529 21 C -0.014 4.014 22 C -0.150 4.150 23 C 0.029 3.971 24 C 0.045 3.955 25 C -0.158 4.158 26 C -0.214 4.214 27 C -0.016 4.016 28 O -0.158 6.158 29 O 0.145 5.855 30 N -0.316 5.316 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.014 0.986 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.017 0.983 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.408 0.592 42 H 0.187 0.813 43 H 0.161 0.839 44 H 0.157 0.843 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 -11.529 12.907 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.313 5.313 6 C -0.384 4.384 7 H 0.084 0.916 8 C -0.196 4.196 9 N -0.545 5.545 10 Si 0.733 3.267 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.204 1.204 14 C 0.047 3.953 15 C -0.195 4.195 16 C 0.056 3.944 17 H 0.095 0.905 18 N -0.342 5.342 19 C 0.378 3.622 20 O -0.404 6.404 21 C -0.172 4.172 22 C -0.172 4.172 23 C -0.034 4.034 24 C -0.006 4.006 25 C -0.178 4.178 26 C -0.233 4.233 27 C -0.085 4.085 28 O -0.054 6.054 29 O 0.065 5.935 30 N -0.013 5.013 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.245 0.755 42 H 0.204 0.796 43 H 0.179 0.821 44 H 0.175 0.825 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -14.492 -10.602 12.483 21.869 hybrid contribution 0.695 -0.130 -0.173 0.728 sum -13.797 -10.732 12.310 21.379 Atomic orbital electron populations 1.21778 0.95682 1.01386 1.01231 1.21963 0.94638 1.00820 0.96543 0.89672 1.20925 0.86158 0.96185 0.94404 1.44072 0.99120 1.71535 1.16599 1.19179 0.98187 1.12387 1.08614 0.91580 1.25043 0.99912 0.95339 0.99281 1.70035 1.21864 1.14566 1.48018 0.86285 0.81657 0.78893 0.79888 1.21443 1.21805 1.20435 1.20734 0.99409 0.92914 0.82223 1.22585 0.93838 1.02210 1.00884 1.21035 0.95419 0.79608 0.98384 0.90474 1.46028 1.65267 1.14485 1.08430 1.16781 0.78139 0.82399 0.84832 1.90778 1.50866 1.68119 1.30641 1.23481 1.05729 0.98331 0.89654 1.22718 1.02623 0.90312 1.01521 1.20456 1.05597 0.93378 0.83964 1.18049 1.08906 0.92441 0.81155 1.22021 1.02674 0.91719 1.01395 1.21831 1.07727 1.01895 0.91819 1.24351 1.01694 0.81561 1.00902 1.84064 1.67028 1.31941 1.22347 1.84953 1.62052 1.25046 1.21400 1.74233 1.13064 0.91354 1.22691 0.93193 0.92555 0.93133 0.96840 0.92304 0.93618 0.96466 0.89422 0.91410 0.92586 0.75491 0.79573 0.82125 0.82514 0.77087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.06 37.16 0.34 -1.61 16 2 C -0.12 -1.97 2.67 -90.50 -0.24 -2.22 16 3 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.15 3.00 5.50 -3.71 -0.02 2.98 16 5 N -0.59 -14.45 2.99 -172.34 -0.52 -14.96 16 6 C -0.25 -6.87 9.59 -15.06 -0.14 -7.02 16 7 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 10 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.17 4.15 5.05 -3.73 -0.02 4.13 16 15 C -0.16 -3.10 5.77 -26.63 -0.15 -3.25 16 16 C 0.16 2.78 2.21 -67.89 -0.15 2.63 16 17 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 18 N -0.69 -11.84 3.59 -54.55 -0.20 -12.04 16 19 C 0.60 10.32 7.81 -12.10 -0.09 10.23 16 20 O -0.53 -10.17 16.61 5.37 0.09 -10.08 16 21 C -0.01 -0.21 7.17 -82.66 -0.59 -0.81 16 22 C -0.15 -1.94 10.96 -38.65 -0.42 -2.36 16 23 C 0.03 0.35 7.30 -36.42 -0.27 0.08 16 24 C 0.05 0.46 7.17 -36.71 -0.26 0.19 16 25 C -0.16 -1.31 10.86 -39.34 -0.43 -1.74 16 26 C -0.21 -1.36 10.88 -39.84 -0.43 -1.79 16 27 C -0.02 -0.10 12.08 29.55 0.36 0.26 16 28 O -0.16 -1.47 10.67 4.58 0.05 -1.42 16 29 O 0.15 1.88 11.21 15.73 0.18 2.05 16 30 N -0.32 -4.73 11.81 33.36 0.39 -4.34 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 34 H 0.01 0.28 6.64 -51.93 -0.34 -0.07 16 35 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 38 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.41 7.05 6.48 -40.82 -0.26 6.79 16 42 H 0.19 2.12 8.06 -52.48 -0.42 1.69 16 43 H 0.16 1.09 8.06 -52.48 -0.42 0.66 16 44 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.21 0.40 8.06 -52.49 -0.42 -0.03 16 LS Contribution 377.05 15.07 5.68 5.68 Total: -1.00 -31.84 377.05 -7.23 -39.07 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.88 Total: 5.24 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.62 Total: -0.29 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.30 Total: -56.91 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.31 Total: -9.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.84 -7.23 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942542433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.617 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds