Wall clock time and date at job start Sat Apr 11 2020 07:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.50120 * 2 1 4 4 C 1.53190 * 109.52272 * 239.91803 * 2 1 3 5 5 N 1.46930 * 108.77935 * 185.39942 * 4 2 1 6 6 C 1.36938 * 120.63092 * 233.59278 * 5 4 2 7 7 H 1.08002 * 120.00133 * 27.67314 * 6 5 4 8 8 C 1.38807 * 119.99614 * 207.68040 * 6 5 4 9 9 N 1.31615 * 120.00661 * 17.36470 * 8 6 5 10 10 Si 1.86802 * 119.99963 * 197.36201 * 8 6 5 11 11 H 1.48497 * 109.46944 * 89.99787 * 10 8 6 12 12 H 1.48493 * 109.47456 * 210.00113 * 10 8 6 13 13 H 1.48505 * 109.47138 * 330.00206 * 10 8 6 14 14 C 1.46922 * 118.73672 * 53.60309 * 5 4 2 15 15 C 1.53164 * 108.77072 * 306.39589 * 14 5 4 16 16 C 1.53039 * 109.32821 * 54.64724 * 15 14 5 17 17 H 1.08997 * 109.46415 * 178.61545 * 16 15 14 18 18 N 1.46496 * 109.46129 * 58.63690 * 16 15 14 19 19 C 1.34783 * 119.99841 * 84.97564 * 18 16 15 20 20 O 1.21494 * 119.99556 * 359.97438 * 19 18 16 21 21 C 1.48339 * 119.99900 * 179.97438 * 19 18 16 22 22 C 1.41723 * 126.81141 * 180.24350 * 21 19 18 23 23 C 1.37152 * 103.79713 * 180.15492 * 22 21 19 24 24 C 1.47016 * 126.85868 * 179.97438 * 23 22 21 25 25 C 1.36340 * 125.96510 * 179.70970 * 24 23 22 26 26 C 1.40696 * 106.72008 * 179.97438 * 25 24 23 27 27 C 1.34897 * 107.08096 * 0.24291 * 26 25 24 28 28 O 1.34221 * 108.73018 * 359.60456 * 27 26 25 29 29 O 1.34579 * 106.28172 * 359.66977 * 23 22 21 30 30 N 1.20868 * 111.69185 * 0.22531 * 29 23 22 31 31 H 1.08998 * 109.47249 * 299.93380 * 1 2 3 32 32 H 1.08993 * 109.47325 * 59.93395 * 1 2 3 33 33 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.58924 * 305.18465 * 4 2 1 35 35 H 1.08998 * 109.59120 * 65.60919 * 4 2 1 36 36 H 0.96993 * 120.00778 * 179.97438 * 9 8 6 37 37 H 1.09001 * 109.58789 * 66.18484 * 14 5 4 38 38 H 1.09006 * 109.58828 * 186.61249 * 14 5 4 39 39 H 1.09001 * 109.50632 * 294.68166 * 15 14 5 40 40 H 1.09001 * 109.48122 * 174.59327 * 15 14 5 41 41 H 0.97001 * 120.00422 * 264.97593 * 18 16 15 42 42 H 1.08007 * 128.10083 * 0.08567 * 22 21 19 43 43 H 1.08005 * 126.63958 * 359.94393 * 25 24 23 44 44 H 1.07994 * 126.46450 * 179.97438 * 26 25 24 45 45 H 1.08001 * 125.63344 * 179.76109 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0419 -0.7237 -1.2494 5 7 3.5053 -0.8284 -1.1690 6 6 4.2943 -0.3783 -2.1937 7 1 3.9472 0.4212 -2.8315 8 6 5.5402 -0.9497 -2.4128 9 7 5.8295 -2.1202 -1.8850 10 14 6.8064 -0.0575 -3.4570 11 1 7.6357 0.8170 -2.5895 12 1 7.6771 -1.0508 -4.1355 13 1 6.1128 0.7706 -4.4761 14 6 4.1059 -1.4256 0.0315 15 6 3.5709 -0.6940 1.2662 16 6 2.0408 -0.7228 1.2486 17 1 1.6579 -0.2241 2.1389 18 7 1.5790 -2.1129 1.2310 19 6 1.4504 -2.7949 2.3864 20 8 1.7179 -2.2569 3.4424 21 6 0.9822 -4.2024 2.3687 22 6 0.7913 -5.0480 3.4899 23 6 0.3599 -6.2280 2.9399 24 6 0.0107 -7.4611 3.6603 25 6 -0.4222 -8.6236 3.0946 26 6 -0.6351 -9.5316 4.1481 27 6 -0.3314 -8.8876 5.2938 28 8 0.0631 -7.6399 4.9953 29 8 0.3134 -6.0296 1.6096 30 7 0.6590 -4.9100 1.3126 31 1 -0.3633 0.5128 0.8905 32 1 -0.3633 0.5148 -0.8893 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6064 -1.7217 -1.2978 35 1 1.7644 -0.1581 -2.1388 36 1 6.6999 -2.5196 -2.0384 37 1 3.8386 -2.4808 0.0876 38 1 5.1902 -1.3229 -0.0127 39 1 3.9154 0.3401 1.2543 40 1 3.9336 -1.1884 2.1673 41 1 1.3658 -2.5426 0.3879 42 1 0.9498 -4.8175 4.5331 43 1 -0.5730 -8.8111 2.0417 44 1 -0.9811 -10.5506 4.0571 45 1 -0.3929 -9.3074 6.2869 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942542433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:36 Heat of formation + Delta-G solvation = 51.356360 kcal Electronic energy + Delta-G solvation = -30035.855466 eV Core-core repulsion = 25830.714048 eV Total energy + Delta-G solvation = -4205.141417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.31901 -43.55461 -41.35888 -39.26988 -36.10047 -35.36301 -34.55130 -34.09794 -33.57519 -32.92660 -31.76465 -29.83331 -27.48546 -27.39745 -25.93936 -24.58661 -23.89597 -23.18476 -22.73978 -22.38180 -21.30540 -20.21541 -19.88699 -19.13948 -18.72620 -18.17688 -17.63540 -17.06898 -16.94547 -16.74065 -16.30950 -16.12231 -15.68319 -15.48796 -15.31940 -15.05788 -14.80606 -14.65781 -14.29301 -13.89901 -13.72318 -13.59951 -13.48245 -13.20645 -13.00909 -12.94540 -12.74107 -12.58699 -12.43976 -12.20069 -11.99898 -11.77808 -11.74109 -11.71973 -11.56742 -11.48319 -11.15784 -10.88951 -10.56409 -10.18929 -9.25011 -8.71086 -7.88941 -5.34708 -0.51219 0.07424 0.91698 1.13429 1.45518 1.47380 1.55737 1.71262 1.75824 1.95781 2.49463 2.61204 2.68164 3.18374 3.26008 3.60776 3.63292 3.71077 3.93666 3.94870 4.00034 4.00542 4.07184 4.21632 4.34889 4.54329 4.60100 4.62031 4.71184 4.74583 4.75879 4.91740 4.94978 4.95918 5.00106 5.02899 5.10374 5.25587 5.35762 5.39951 5.47303 5.48785 5.61942 5.68902 5.95596 6.22667 6.35990 6.71372 6.88851 7.11644 7.82672 8.34485 9.17141 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002499 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.335890 B =11202.449139 C =12072.184388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.088 0.912 4 C 0.148 3.852 5 N -0.607 5.607 6 C -0.259 4.259 7 H 0.072 0.928 8 C -0.052 4.052 9 N -0.936 5.936 10 Si 0.967 3.033 11 H -0.287 1.287 12 H -0.298 1.298 13 H -0.266 1.266 14 C 0.186 3.814 15 C -0.143 4.143 16 C 0.164 3.836 17 H 0.090 0.910 18 N -0.690 5.690 19 C 0.597 3.403 20 O -0.551 6.551 21 C -0.032 4.032 22 C -0.164 4.164 23 C 0.050 3.950 24 C 0.003 3.997 25 C -0.147 4.147 26 C -0.224 4.224 27 C 0.001 3.999 28 O -0.174 6.174 29 O 0.152 5.848 30 N -0.335 5.335 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.013 0.987 35 H 0.062 0.938 36 H 0.248 0.752 37 H -0.008 1.008 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.407 0.593 42 H 0.198 0.802 43 H 0.172 0.828 44 H 0.185 0.815 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.878 -12.179 13.774 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 H 0.106 0.894 4 C 0.022 3.978 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.089 0.911 8 C -0.248 4.248 9 N -0.582 5.582 10 Si 0.795 3.205 11 H -0.214 1.214 12 H -0.225 1.225 13 H -0.190 1.190 14 C 0.060 3.940 15 C -0.184 4.184 16 C 0.060 3.940 17 H 0.108 0.892 18 N -0.340 5.340 19 C 0.381 3.619 20 O -0.428 6.428 21 C -0.189 4.189 22 C -0.186 4.186 23 C -0.013 4.013 24 C -0.047 4.047 25 C -0.167 4.167 26 C -0.242 4.242 27 C -0.067 4.067 28 O -0.071 6.071 29 O 0.071 5.929 30 N -0.033 5.033 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.010 0.990 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.244 0.756 42 H 0.215 0.785 43 H 0.189 0.811 44 H 0.202 0.798 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -16.439 -11.224 13.334 23.958 hybrid contribution 1.201 -0.143 -0.373 1.265 sum -15.238 -11.367 12.961 23.008 Atomic orbital electron populations 1.21709 0.92807 1.01884 1.02823 1.21817 0.96847 1.00036 0.93901 0.89364 1.21093 0.83584 0.96670 0.96456 1.44290 1.00982 1.71473 1.16230 1.19535 0.98666 1.12075 1.08678 0.91073 1.25806 1.01846 0.96030 1.01073 1.70198 1.21867 1.16152 1.49946 0.85270 0.79121 0.77576 0.78508 1.21408 1.22459 1.19022 1.20408 0.97328 0.92138 0.84085 1.22407 0.95947 1.01590 0.98406 1.20983 0.93368 0.80169 0.99469 0.89232 1.46002 1.65158 1.14409 1.08456 1.16991 0.77477 0.83068 0.84379 1.90751 1.51920 1.68897 1.31244 1.23316 1.07011 0.97734 0.90807 1.22821 1.03812 0.90391 1.01557 1.20704 1.03547 0.93827 0.83251 1.17980 1.12455 0.92423 0.81882 1.22397 1.00396 0.91364 1.02574 1.22216 1.07969 1.02957 0.91105 1.25330 0.98568 0.80094 1.02715 1.84066 1.67547 1.33585 1.21867 1.84905 1.61557 1.24228 1.22164 1.74210 1.14030 0.92039 1.22998 0.91572 0.91013 0.93206 0.96917 0.91901 0.94290 0.98970 0.93147 0.90986 0.93067 0.75605 0.78529 0.81077 0.79770 0.72996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.06 71.98 0.65 -2.68 16 2 C -0.11 -3.36 2.67 -10.71 -0.03 -3.39 16 3 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 4 C 0.15 5.84 5.50 86.36 0.48 6.31 16 5 N -0.61 -30.13 2.99 -699.15 -2.09 -32.22 16 6 C -0.26 -14.16 9.59 84.03 0.81 -13.35 16 7 H 0.07 3.74 7.89 -2.91 -0.02 3.72 16 8 C -0.05 -2.94 4.91 84.86 0.42 -2.53 16 9 N -0.94 -56.37 11.19 21.65 0.24 -56.13 16 10 Si 0.97 45.31 29.59 68.60 2.03 47.34 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.19 9.28 5.05 86.35 0.44 9.72 16 15 C -0.14 -5.82 5.77 30.66 0.18 -5.64 16 16 C 0.16 5.64 2.21 45.02 0.10 5.74 16 17 H 0.09 2.94 7.58 -2.39 -0.02 2.93 16 18 N -0.69 -23.84 3.59 -444.80 -1.60 -25.44 16 19 C 0.60 21.03 7.81 86.93 0.68 21.71 16 20 O -0.55 -21.42 16.61 -3.70 -0.06 -21.48 16 21 C -0.03 -1.01 7.17 42.79 0.31 -0.70 16 22 C -0.16 -4.31 10.96 22.88 0.25 -4.06 16 23 C 0.05 1.19 7.30 24.32 0.18 1.36 16 24 C 0.00 0.05 7.17 24.13 0.17 0.22 16 25 C -0.15 -2.17 10.86 22.43 0.24 -1.92 16 26 C -0.22 -2.14 10.88 22.10 0.24 -1.90 16 27 C 0.00 0.01 12.08 67.05 0.81 0.82 16 28 O -0.17 -2.95 10.67 -6.54 -0.07 -3.02 16 29 O 0.15 3.97 11.21 66.48 0.75 4.71 16 30 N -0.34 -10.30 11.81 -48.87 -0.58 -10.88 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.25 7.54 -2.38 -0.02 1.23 16 34 H 0.01 0.52 6.64 -2.39 -0.02 0.50 16 35 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H -0.01 -0.42 7.74 -2.39 -0.02 -0.44 16 38 H 0.05 2.88 6.04 -2.38 -0.01 2.86 16 39 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.41 14.30 6.48 -92.71 -0.60 13.70 16 42 H 0.20 4.56 8.06 -2.91 -0.02 4.53 16 43 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 44 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.25 -0.21 8.06 -2.91 -0.02 -0.23 16 Total: -1.00 -71.10 377.05 4.96 -66.14 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.43 Total: 21.25 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.91 Total: 9.73 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -4.03 Total: -124.67 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.61 Total: -19.78 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.10 4.96 -66.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942542433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.499 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds