Wall clock time and date at job start Sat Apr 11 2020 07:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52131 * 2 1 4 4 C 1.53188 * 109.50195 * 239.91831 * 2 1 3 5 5 N 1.46925 * 108.77602 * 185.41617 * 4 2 1 6 6 C 1.36938 * 120.62616 * 233.62453 * 5 4 2 7 7 H 1.08004 * 120.00130 * 27.66217 * 6 5 4 8 8 C 1.38809 * 120.00083 * 207.65972 * 6 5 4 9 9 N 1.31625 * 120.00039 * 17.37398 * 8 6 5 10 10 Si 1.86803 * 120.00209 * 197.37830 * 8 6 5 11 11 H 1.48505 * 109.47029 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47298 * 119.99910 * 10 8 6 13 13 H 1.48502 * 109.46699 * 240.00156 * 10 8 6 14 14 C 1.46922 * 118.74498 * 53.60860 * 5 4 2 15 15 C 1.53192 * 108.77133 * 306.39165 * 14 5 4 16 16 C 1.53044 * 109.31752 * 54.63302 * 15 14 5 17 17 H 1.09000 * 109.45583 * 58.63810 * 16 15 14 18 18 N 1.46493 * 109.46406 * 178.61503 * 16 15 14 19 19 C 1.34783 * 119.99833 * 274.99987 * 18 16 15 20 20 O 1.21493 * 120.00046 * 0.02562 * 19 18 16 21 21 C 1.48352 * 119.99623 * 180.02562 * 19 18 16 22 22 C 1.41720 * 126.80571 * 180.33512 * 21 19 18 23 23 C 1.37162 * 103.79150 * 180.12907 * 22 21 19 24 24 C 1.47001 * 126.85968 * 179.86922 * 23 22 21 25 25 C 1.36339 * 125.97149 * 179.71302 * 24 23 22 26 26 C 1.40694 * 106.72412 * 179.97438 * 25 24 23 27 27 C 1.34885 * 107.08390 * 0.02562 * 26 25 24 28 28 O 1.34231 * 108.73074 * 359.75272 * 27 26 25 29 29 O 1.34583 * 106.27998 * 359.61451 * 23 22 21 30 30 N 1.20871 * 111.69475 * 0.25578 * 29 23 22 31 31 H 1.09001 * 109.47674 * 299.92350 * 1 2 3 32 32 H 1.08999 * 109.47172 * 59.92404 * 1 2 3 33 33 H 1.09003 * 109.47490 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.58967 * 65.62420 * 4 2 1 35 35 H 1.09005 * 109.70213 * 305.27357 * 4 2 1 36 36 H 0.96997 * 120.00077 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.59298 * 186.60369 * 14 5 4 38 38 H 1.09000 * 109.58572 * 66.16942 * 14 5 4 39 39 H 1.09007 * 109.49916 * 294.68233 * 15 14 5 40 40 H 1.09007 * 109.49870 * 174.58413 * 15 14 5 41 41 H 0.97002 * 120.00112 * 95.00032 * 18 16 15 42 42 H 1.07989 * 128.10448 * 359.97438 * 22 21 19 43 43 H 1.08004 * 126.63496 * 359.94373 * 25 24 23 44 44 H 1.08002 * 126.45584 * 179.97438 * 26 25 24 45 45 H 1.07999 * 125.63707 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1694 6 6 4.2936 -0.3786 -2.1939 7 1 3.9466 0.4214 -2.8312 8 6 5.5395 -0.9499 -2.4134 9 7 5.8287 -2.1208 -1.8862 10 14 6.8058 -0.0571 -3.4569 11 1 6.2380 1.2311 -3.9299 12 1 8.0206 0.2056 -2.6442 13 1 7.1651 -0.8983 -4.6267 14 6 4.1053 -1.4266 0.0309 15 6 3.5708 -0.6949 1.2661 16 6 2.0408 -0.7230 1.2485 17 1 1.6967 -1.7572 1.2352 18 7 1.5264 -0.0528 2.4453 19 6 1.3971 -0.7385 3.5985 20 8 1.7074 -1.9122 3.6455 21 6 0.8757 -0.0599 4.8103 22 6 0.6879 -0.6360 6.0915 23 6 0.1892 0.3964 6.8443 24 6 -0.1894 0.3498 8.2639 25 6 -0.6790 1.3901 8.9967 26 6 -0.9026 0.9000 10.2964 27 6 -0.5432 -0.4001 10.2969 28 8 -0.1180 -0.7302 9.0673 29 8 0.1210 1.4620 6.0251 30 7 0.5025 1.1936 4.9101 31 1 -0.3634 0.5126 0.8906 32 1 -0.3633 0.5150 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7639 -0.1580 -2.1389 35 1 1.6054 -1.7216 -1.3005 36 1 6.6991 -2.5202 -2.0399 37 1 5.1896 -1.3246 -0.0135 38 1 3.8375 -2.4817 0.0870 39 1 3.9159 0.3390 1.2542 40 1 3.9334 -1.1896 2.1673 41 1 1.2790 0.8844 2.4079 42 1 0.8880 -1.6508 6.4017 43 1 -0.8596 2.3960 8.6472 44 1 -1.2884 1.4595 11.1358 45 1 -0.5930 -1.0664 11.1454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942542436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:45 Heat of formation + Delta-G solvation = 68.188125 kcal Electronic energy + Delta-G solvation = -29397.075512 eV Core-core repulsion = 25192.663975 eV Total energy + Delta-G solvation = -4204.411537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.39892 -43.05911 -39.86737 -37.71620 -34.65559 -34.39901 -33.84921 -33.16249 -32.53556 -31.19997 -29.89525 -29.21972 -26.11340 -25.70367 -24.33490 -23.80674 -22.65963 -21.92096 -21.68692 -21.00268 -20.18090 -19.55186 -18.79163 -18.22324 -17.11655 -17.03108 -16.61154 -16.52001 -15.96649 -15.29349 -14.89000 -14.72416 -14.42223 -14.08140 -13.86248 -13.58686 -13.46693 -13.31129 -13.29139 -12.93781 -12.82540 -12.68248 -12.15010 -12.05273 -11.51551 -11.32521 -11.09494 -10.99339 -10.87756 -10.78575 -10.66716 -10.41094 -10.40159 -10.23011 -10.22614 -10.01129 -9.80977 -9.54138 -8.80569 -8.66689 -8.44491 -6.70168 -5.79366 -3.21958 0.20440 1.05333 1.56711 1.68087 2.25560 2.89410 3.10857 3.20991 3.37269 3.45141 3.47157 3.65827 3.98739 4.38647 4.43265 4.48656 4.54132 4.81687 4.92175 5.10741 5.25712 5.28919 5.30236 5.39145 5.42061 5.48424 5.50235 5.57420 5.85816 5.86100 5.95739 6.07644 6.22236 6.22866 6.28765 6.42604 6.43251 6.56281 6.64879 6.74942 6.83660 6.94074 7.34562 7.42026 7.64940 7.67597 7.79456 8.12951 8.43759 9.19884 9.83245 10.39486 11.29254 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025139 B = 0.001980 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.557767 B =14140.655566 C =14476.817025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.073 0.927 4 C 0.155 3.845 5 N -0.592 5.592 6 C -0.254 4.254 7 H 0.067 0.933 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.174 3.826 15 C -0.149 4.149 16 C 0.156 3.844 17 H 0.086 0.914 18 N -0.702 5.702 19 C 0.593 3.407 20 O -0.517 6.517 21 C -0.012 4.012 22 C -0.150 4.150 23 C 0.033 3.967 24 C 0.043 3.957 25 C -0.157 4.157 26 C -0.215 4.215 27 C -0.014 4.014 28 O -0.158 6.158 29 O 0.142 5.858 30 N -0.322 5.322 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.091 0.909 38 H 0.022 0.978 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.401 0.599 42 H 0.188 0.812 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 6.594 23.785 29.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 H 0.091 0.909 4 C 0.028 3.972 5 N -0.315 5.315 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.732 3.268 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.047 3.953 15 C -0.189 4.189 16 C 0.053 3.947 17 H 0.104 0.896 18 N -0.352 5.352 19 C 0.375 3.625 20 O -0.392 6.392 21 C -0.170 4.170 22 C -0.172 4.172 23 C -0.031 4.031 24 C -0.008 4.008 25 C -0.177 4.177 26 C -0.233 4.233 27 C -0.082 4.082 28 O -0.053 6.053 29 O 0.063 5.937 30 N -0.021 5.021 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.236 0.764 42 H 0.205 0.795 43 H 0.178 0.822 44 H 0.175 0.825 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -14.856 6.317 22.679 27.838 hybrid contribution 0.609 0.330 0.127 0.704 sum -14.248 6.647 22.806 27.700 Atomic orbital electron populations 1.21784 0.95710 1.01642 1.00966 1.21987 0.94603 1.00714 0.96262 0.90898 1.20890 0.85979 0.96667 0.93663 1.44112 0.99286 1.71419 1.16639 1.19212 0.98170 1.12345 1.08578 0.91552 1.25054 0.99934 0.95379 0.99298 1.70046 1.21857 1.14590 1.48005 0.86236 0.81708 0.79236 0.79661 1.20258 1.21563 1.21722 1.20773 0.99541 0.93110 0.81862 1.22611 0.93486 1.01785 1.01002 1.21215 0.94840 0.96964 0.81661 0.89579 1.46208 1.64437 1.14598 1.09999 1.16831 0.78524 0.85874 0.81264 1.90831 1.49668 1.14889 1.83765 1.23551 1.05119 0.90688 0.97649 1.22763 1.02149 1.01730 0.90572 1.20445 1.04838 0.87659 0.90120 1.18035 1.08626 0.86570 0.87577 1.22011 1.02229 0.99952 0.93507 1.21835 1.07486 0.95428 0.98597 1.24380 1.00909 0.97471 0.85472 1.84078 1.66368 1.35090 1.19783 1.84926 1.61244 1.33475 1.14027 1.74177 1.13099 1.16552 0.98314 0.93516 0.92548 0.92811 0.92258 0.96068 0.93613 0.89076 0.96007 0.92473 0.92675 0.76399 0.79470 0.82163 0.82466 0.77012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.03 37.16 0.34 -1.63 16 2 C -0.11 -1.92 2.46 -90.50 -0.22 -2.14 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.16 3.18 5.80 -3.71 -0.02 3.16 16 5 N -0.59 -14.72 2.99 -172.33 -0.52 -15.24 16 6 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 7 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 8 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 9 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 10 Si 0.90 21.70 29.59 -169.99 -5.03 16.67 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 C 0.17 4.22 5.31 -3.71 -0.02 4.20 16 15 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 16 C 0.16 2.74 1.88 -67.89 -0.13 2.61 16 17 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 18 N -0.70 -10.64 4.36 -54.55 -0.24 -10.88 16 19 C 0.59 9.45 7.81 -12.09 -0.09 9.35 16 20 O -0.52 -9.82 16.61 5.37 0.09 -9.74 16 21 C -0.01 -0.16 7.17 -82.66 -0.59 -0.75 16 22 C -0.15 -1.74 10.96 -38.64 -0.42 -2.16 16 23 C 0.03 0.33 7.30 -36.42 -0.27 0.07 16 24 C 0.04 0.38 7.17 -36.72 -0.26 0.11 16 25 C -0.16 -1.09 10.86 -39.34 -0.43 -1.51 16 26 C -0.21 -1.12 10.88 -39.84 -0.43 -1.56 16 27 C -0.01 -0.07 12.08 29.54 0.36 0.29 16 28 O -0.16 -1.30 10.67 4.53 0.05 -1.26 16 29 O 0.14 1.52 11.21 15.72 0.18 1.70 16 30 N -0.32 -4.00 11.81 33.36 0.39 -3.61 16 31 H 0.05 0.58 7.36 -51.93 -0.38 0.20 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 2.47 6.03 -51.93 -0.31 2.16 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.40 5.36 8.07 -40.82 -0.33 5.03 16 42 H 0.19 1.95 8.06 -52.49 -0.42 1.52 16 43 H 0.16 0.84 8.06 -52.48 -0.42 0.41 16 44 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 45 H 0.21 0.22 8.06 -52.49 -0.42 -0.20 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -32.13 380.99 -7.32 -39.45 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.03 Total: 3.00 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.58 Total: -0.18 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: 0.26 Total: -55.39 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.31 Total: -9.29 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.13 -7.32 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942542436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.637 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds