Wall clock time and date at job start Sat Apr 11 2020 07:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52131 * 2 1 4 4 C 1.53188 * 109.50195 * 239.91831 * 2 1 3 5 5 N 1.46925 * 108.77602 * 185.41617 * 4 2 1 6 6 C 1.36938 * 120.62616 * 233.62453 * 5 4 2 7 7 H 1.08004 * 120.00130 * 27.66217 * 6 5 4 8 8 C 1.38809 * 120.00083 * 207.65972 * 6 5 4 9 9 N 1.31625 * 120.00039 * 17.37398 * 8 6 5 10 10 Si 1.86803 * 120.00209 * 197.37830 * 8 6 5 11 11 H 1.48505 * 109.47029 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47298 * 119.99910 * 10 8 6 13 13 H 1.48502 * 109.46699 * 240.00156 * 10 8 6 14 14 C 1.46922 * 118.74498 * 53.60860 * 5 4 2 15 15 C 1.53192 * 108.77133 * 306.39165 * 14 5 4 16 16 C 1.53044 * 109.31752 * 54.63302 * 15 14 5 17 17 H 1.09000 * 109.45583 * 58.63810 * 16 15 14 18 18 N 1.46493 * 109.46406 * 178.61503 * 16 15 14 19 19 C 1.34783 * 119.99833 * 274.99987 * 18 16 15 20 20 O 1.21493 * 120.00046 * 0.02562 * 19 18 16 21 21 C 1.48352 * 119.99623 * 180.02562 * 19 18 16 22 22 C 1.41720 * 126.80571 * 180.33512 * 21 19 18 23 23 C 1.37162 * 103.79150 * 180.12907 * 22 21 19 24 24 C 1.47001 * 126.85968 * 179.86922 * 23 22 21 25 25 C 1.36339 * 125.97149 * 179.71302 * 24 23 22 26 26 C 1.40694 * 106.72412 * 179.97438 * 25 24 23 27 27 C 1.34885 * 107.08390 * 0.02562 * 26 25 24 28 28 O 1.34231 * 108.73074 * 359.75272 * 27 26 25 29 29 O 1.34583 * 106.27998 * 359.61451 * 23 22 21 30 30 N 1.20871 * 111.69475 * 0.25578 * 29 23 22 31 31 H 1.09001 * 109.47674 * 299.92350 * 1 2 3 32 32 H 1.08999 * 109.47172 * 59.92404 * 1 2 3 33 33 H 1.09003 * 109.47490 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.58967 * 65.62420 * 4 2 1 35 35 H 1.09005 * 109.70213 * 305.27357 * 4 2 1 36 36 H 0.96997 * 120.00077 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.59298 * 186.60369 * 14 5 4 38 38 H 1.09000 * 109.58572 * 66.16942 * 14 5 4 39 39 H 1.09007 * 109.49916 * 294.68233 * 15 14 5 40 40 H 1.09007 * 109.49870 * 174.58413 * 15 14 5 41 41 H 0.97002 * 120.00112 * 95.00032 * 18 16 15 42 42 H 1.07989 * 128.10448 * 359.97438 * 22 21 19 43 43 H 1.08004 * 126.63496 * 359.94373 * 25 24 23 44 44 H 1.08002 * 126.45584 * 179.97438 * 26 25 24 45 45 H 1.07999 * 125.63707 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7238 -1.2495 5 7 3.5046 -0.8291 -1.1694 6 6 4.2936 -0.3786 -2.1939 7 1 3.9466 0.4214 -2.8312 8 6 5.5395 -0.9499 -2.4134 9 7 5.8287 -2.1208 -1.8862 10 14 6.8058 -0.0571 -3.4569 11 1 6.2380 1.2311 -3.9299 12 1 8.0206 0.2056 -2.6442 13 1 7.1651 -0.8983 -4.6267 14 6 4.1053 -1.4266 0.0309 15 6 3.5708 -0.6949 1.2661 16 6 2.0408 -0.7230 1.2485 17 1 1.6967 -1.7572 1.2352 18 7 1.5264 -0.0528 2.4453 19 6 1.3971 -0.7385 3.5985 20 8 1.7074 -1.9122 3.6455 21 6 0.8757 -0.0599 4.8103 22 6 0.6879 -0.6360 6.0915 23 6 0.1892 0.3964 6.8443 24 6 -0.1894 0.3498 8.2639 25 6 -0.6790 1.3901 8.9967 26 6 -0.9026 0.9000 10.2964 27 6 -0.5432 -0.4001 10.2969 28 8 -0.1180 -0.7302 9.0673 29 8 0.1210 1.4620 6.0251 30 7 0.5025 1.1936 4.9101 31 1 -0.3634 0.5126 0.8906 32 1 -0.3633 0.5150 -0.8893 33 1 -0.3634 -1.0277 -0.0005 34 1 1.7639 -0.1580 -2.1389 35 1 1.6054 -1.7216 -1.3005 36 1 6.6991 -2.5202 -2.0399 37 1 5.1896 -1.3246 -0.0135 38 1 3.8375 -2.4817 0.0870 39 1 3.9159 0.3390 1.2542 40 1 3.9334 -1.1896 2.1673 41 1 1.2790 0.8844 2.4079 42 1 0.8880 -1.6508 6.4017 43 1 -0.8596 2.3960 8.6472 44 1 -1.2884 1.4595 11.1358 45 1 -0.5930 -1.0664 11.1454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942542436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:44 Heat of formation + Delta-G solvation = 48.234270 kcal Electronic energy + Delta-G solvation = -29397.940776 eV Core-core repulsion = 25192.663975 eV Total energy + Delta-G solvation = -4205.276801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.31453 -43.55244 -41.24729 -39.29391 -36.33176 -35.37982 -34.57834 -34.22736 -33.62082 -32.97261 -31.64231 -29.83394 -27.50348 -27.42004 -25.75379 -24.58622 -23.92043 -22.89365 -22.67633 -22.37764 -21.46156 -20.73586 -19.78420 -19.12873 -18.74460 -18.07379 -17.73386 -17.28342 -17.06355 -16.77374 -16.16941 -16.07651 -15.65832 -15.59515 -15.22594 -15.05470 -14.77973 -14.60385 -14.31130 -13.89019 -13.72182 -13.66267 -13.48694 -13.11192 -13.05333 -12.96871 -12.77852 -12.65742 -12.33939 -12.13088 -12.06731 -11.79359 -11.77076 -11.71769 -11.64086 -11.55506 -11.21718 -10.88564 -10.60320 -10.19911 -9.24762 -8.74071 -7.89415 -5.35155 -0.52686 0.05308 0.90447 1.13118 1.45632 1.47624 1.58263 1.68545 1.71958 1.91328 2.49906 2.60137 2.64120 3.17163 3.26735 3.58419 3.62507 3.67613 3.92562 3.93206 3.96641 4.00648 4.09496 4.21550 4.31610 4.55000 4.61087 4.63942 4.66917 4.76411 4.80518 4.83160 4.95066 4.95344 5.00695 5.02689 5.08560 5.23192 5.32581 5.37853 5.46792 5.47679 5.61664 5.66971 5.95890 6.21553 6.36291 6.69711 6.88633 7.11106 7.81628 8.34297 9.17896 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025139 B = 0.001980 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.557767 B =14140.655566 C =14476.817025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.151 3.849 5 N -0.609 5.609 6 C -0.260 4.260 7 H 0.073 0.927 8 C -0.054 4.054 9 N -0.937 5.937 10 Si 0.968 3.032 11 H -0.263 1.263 12 H -0.292 1.292 13 H -0.293 1.293 14 C 0.183 3.817 15 C -0.134 4.134 16 C 0.168 3.832 17 H 0.067 0.933 18 N -0.691 5.691 19 C 0.595 3.405 20 O -0.554 6.554 21 C -0.027 4.027 22 C -0.169 4.169 23 C 0.055 3.945 24 C 0.001 3.999 25 C -0.144 4.144 26 C -0.224 4.224 27 C -0.001 4.001 28 O -0.177 6.177 29 O 0.154 5.846 30 N -0.327 5.327 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.014 0.986 36 H 0.250 0.750 37 H 0.058 0.942 38 H -0.006 1.006 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.414 0.586 42 H 0.192 0.808 43 H 0.175 0.825 44 H 0.185 0.815 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 8.913 25.843 32.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.121 4.121 3 H 0.097 0.903 4 C 0.025 3.975 5 N -0.332 5.332 6 C -0.390 4.390 7 H 0.091 0.909 8 C -0.249 4.249 9 N -0.583 5.583 10 Si 0.796 3.204 11 H -0.187 1.187 12 H -0.219 1.219 13 H -0.220 1.220 14 C 0.056 3.944 15 C -0.174 4.174 16 C 0.064 3.936 17 H 0.085 0.915 18 N -0.342 5.342 19 C 0.379 3.621 20 O -0.430 6.430 21 C -0.184 4.184 22 C -0.191 4.191 23 C -0.008 4.008 24 C -0.049 4.049 25 C -0.164 4.164 26 C -0.242 4.242 27 C -0.069 4.069 28 O -0.073 6.073 29 O 0.074 5.926 30 N -0.025 5.025 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.012 0.988 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.251 0.749 42 H 0.209 0.791 43 H 0.193 0.807 44 H 0.202 0.798 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -16.863 8.685 24.724 31.162 hybrid contribution 1.115 -0.384 -0.307 1.219 sum -15.748 8.301 24.417 30.218 Atomic orbital electron populations 1.21721 0.92762 1.02062 1.02725 1.21788 0.96859 0.99937 0.93543 0.90298 1.21067 0.83486 0.96932 0.96019 1.44346 1.01118 1.71384 1.16330 1.19582 0.98648 1.12117 1.08664 0.90906 1.25853 1.01909 0.96071 1.01089 1.70208 1.21985 1.16206 1.49925 0.85193 0.78956 0.78467 0.77743 1.18713 1.21901 1.22002 1.20478 0.97797 0.92237 0.83872 1.22361 0.95520 1.01021 0.98492 1.20862 0.92899 0.96579 0.83296 0.91454 1.45936 1.64076 1.15027 1.09126 1.17083 0.77663 0.85462 0.81856 1.90812 1.51205 1.16554 1.84446 1.23166 1.06649 0.91380 0.97173 1.22816 1.03608 1.02482 0.90186 1.20600 1.02870 0.86624 0.90708 1.18021 1.11958 0.87730 0.87229 1.22401 0.99878 1.00074 0.94034 1.22223 1.07646 0.95722 0.98656 1.25308 0.98228 0.98289 0.85054 1.84078 1.66975 1.35386 1.20879 1.84892 1.60585 1.33464 1.13669 1.74150 1.13337 1.15915 0.99079 0.91744 0.90801 0.93107 0.91446 0.96789 0.94131 0.92365 0.98812 0.92091 0.93169 0.74914 0.79098 0.80712 0.79800 0.73267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.03 71.98 0.65 -2.73 16 2 C -0.10 -3.25 2.46 -10.72 -0.03 -3.28 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.15 6.16 5.80 86.36 0.50 6.66 16 5 N -0.61 -30.88 2.99 -699.12 -2.09 -32.98 16 6 C -0.26 -14.30 9.58 84.03 0.81 -13.50 16 7 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 8 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 9 N -0.94 -56.78 11.19 21.65 0.24 -56.53 16 10 Si 0.97 45.30 29.59 68.60 2.03 47.33 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 13 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 14 C 0.18 9.31 5.31 86.36 0.46 9.77 16 15 C -0.13 -5.52 5.65 30.67 0.17 -5.34 16 16 C 0.17 5.91 1.88 45.02 0.08 5.99 16 17 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 18 N -0.69 -20.51 4.36 -444.78 -1.94 -22.45 16 19 C 0.60 19.08 7.81 86.94 0.68 19.76 16 20 O -0.55 -21.65 16.61 -3.69 -0.06 -21.71 16 21 C -0.03 -0.72 7.17 42.80 0.31 -0.41 16 22 C -0.17 -3.90 10.96 22.88 0.25 -3.65 16 23 C 0.06 1.08 7.30 24.32 0.18 1.26 16 24 C 0.00 0.01 7.17 24.13 0.17 0.18 16 25 C -0.14 -1.63 10.86 22.43 0.24 -1.38 16 26 C -0.22 -1.59 10.88 22.10 0.24 -1.35 16 27 C 0.00 -0.01 12.08 67.05 0.81 0.80 16 28 O -0.18 -2.63 10.67 -6.70 -0.07 -2.70 16 29 O 0.15 3.11 11.21 66.44 0.74 3.86 16 30 N -0.33 -7.78 11.81 -48.87 -0.58 -8.35 16 31 H 0.06 1.41 7.36 -2.39 -0.02 1.40 16 32 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 35 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.06 3.33 6.03 -2.39 -0.01 3.32 16 38 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 39 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 40 H 0.05 2.09 8.14 -2.38 -0.02 2.08 16 41 H 0.41 10.37 8.07 -92.71 -0.75 9.62 16 42 H 0.19 4.10 8.06 -2.92 -0.02 4.08 16 43 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 45 H 0.25 -0.52 8.06 -2.91 -0.02 -0.54 16 Total: -1.00 -72.30 380.99 4.50 -67.80 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.28 Total: 15.60 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 5.94 Total: 10.14 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -4.37 Total: -120.32 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: 0.61 Total: -20.55 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -72.30 4.50 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942542436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.035 kcal (2) G-P(sol) polarization free energy of solvation -72.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds