Wall clock time and date at job start Sat Apr 11 2020 07:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52591 * 2 1 4 4 C 1.53197 * 109.49298 * 239.92777 * 2 1 3 5 5 N 1.46930 * 108.77228 * 185.41127 * 4 2 1 6 6 C 1.36937 * 120.63595 * 233.62774 * 5 4 2 7 7 H 1.08009 * 119.99440 * 27.65417 * 6 5 4 8 8 C 1.38803 * 120.00530 * 207.66636 * 6 5 4 9 9 N 1.31619 * 120.00080 * 17.36290 * 8 6 5 10 10 Si 1.86797 * 120.00079 * 197.36919 * 8 6 5 11 11 H 1.48501 * 109.47213 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47373 * 119.99468 * 10 8 6 13 13 H 1.48498 * 109.47465 * 239.99698 * 10 8 6 14 14 C 1.46935 * 118.73872 * 53.60656 * 5 4 2 15 15 C 1.53192 * 108.77544 * 306.39125 * 14 5 4 16 16 C 1.53034 * 109.50011 * 120.05650 * 2 1 3 17 17 H 1.08999 * 109.48342 * 301.31634 * 16 2 1 18 18 N 1.46494 * 109.43732 * 61.27555 * 16 2 1 19 19 C 1.34773 * 120.00410 * 205.05312 * 18 16 2 20 20 O 1.21595 * 119.99970 * 0.02562 * 19 18 16 21 21 C 1.47520 * 119.99818 * 179.97438 * 19 18 16 22 22 C 1.40088 * 119.93929 * 0.02562 * 21 19 18 23 23 C 1.36289 * 120.39156 * 179.97438 * 22 21 19 24 24 C 1.39856 * 120.04334 * 0.02562 * 23 22 21 25 25 N 1.35812 * 133.52288 * 179.97438 * 24 23 22 26 26 C 1.30778 * 108.79804 * 179.97438 * 25 24 23 27 27 O 1.35099 * 124.91863 * 180.02562 * 26 25 24 28 28 O 1.34316 * 110.15642 * 0.02562 * 26 25 24 29 29 C 1.35307 * 108.13274 * 0.02562 * 28 26 25 30 30 C 1.38107 * 133.76573 * 180.28596 * 29 28 26 31 31 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46837 * 300.07725 * 1 2 3 33 33 H 1.09000 * 109.47164 * 60.07684 * 1 2 3 34 34 H 1.08991 * 109.59010 * 65.62622 * 4 2 1 35 35 H 1.09004 * 109.70066 * 305.26344 * 4 2 1 36 36 H 0.97006 * 120.00073 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.58626 * 186.60013 * 14 5 4 38 38 H 1.09003 * 109.58247 * 66.17798 * 14 5 4 39 39 H 1.08992 * 109.49723 * 174.58324 * 15 14 5 40 40 H 1.09006 * 109.49561 * 294.65338 * 15 14 5 41 41 H 0.97007 * 119.99558 * 25.05486 * 18 16 2 42 42 H 1.08008 * 119.80290 * 359.97438 * 22 21 19 43 43 H 1.08004 * 119.98200 * 179.97438 * 23 22 21 44 44 H 0.96693 * 114.00105 * 90.02869 * 27 26 25 45 45 H 1.07996 * 120.18521 * 359.93002 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2498 5 7 3.5045 -0.8290 -1.1698 6 6 4.2936 -0.3783 -2.1943 7 1 3.9464 0.4218 -2.8315 8 6 5.5393 -0.9496 -2.4140 9 7 5.8285 -2.1205 -1.8869 10 14 6.8055 -0.0567 -3.4574 11 1 6.2378 1.2315 -3.9301 12 1 8.0204 0.2058 -2.6448 13 1 7.1648 -0.8977 -4.6274 14 6 4.1053 -1.4267 0.0305 15 6 3.5709 -0.6951 1.2658 16 6 2.0408 -0.7225 1.2486 17 1 1.6587 -0.2236 2.1392 18 7 1.5777 -2.1122 1.2314 19 6 1.4483 -2.7938 2.3868 20 8 1.7156 -2.2552 3.4437 21 6 0.9814 -4.1931 2.3694 22 6 0.6734 -4.8122 1.1511 23 6 0.2418 -6.1047 1.1242 24 6 0.1033 -6.8216 2.3171 25 7 -0.2936 -8.0877 2.6066 26 6 -0.2418 -8.2598 3.9020 27 8 -0.5676 -9.4030 4.5439 28 8 0.1824 -7.1353 4.5017 29 6 0.4095 -6.2071 3.5437 30 6 0.8511 -4.8987 3.5667 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3633 0.5126 -0.8907 34 1 1.7637 -0.1577 -2.1389 35 1 1.6053 -1.7214 -1.3008 36 1 6.6993 -2.5197 -2.0402 37 1 5.1896 -1.3246 -0.0141 38 1 3.8375 -2.4818 0.0863 39 1 3.9335 -1.1899 2.1668 40 1 3.9164 0.3387 1.2542 41 1 1.3642 -2.5419 0.3883 42 1 0.7786 -4.2621 0.2276 43 1 0.0058 -6.5754 0.1813 44 1 0.1733 -10.0133 4.6608 45 1 1.0926 -4.4236 4.5060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000945225772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:55 Heat of formation + Delta-G solvation = -6.082616 kcal Electronic energy + Delta-G solvation = -30296.149919 eV Core-core repulsion = 26088.517761 eV Total energy + Delta-G solvation = -4207.632158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.60953 -40.26671 -38.73449 -38.04700 -37.20190 -34.93458 -34.35539 -32.68270 -31.23856 -31.05933 -30.48065 -29.28901 -25.96128 -25.41439 -24.27354 -23.84877 -22.35615 -22.07739 -21.29346 -20.98583 -19.64192 -18.80764 -18.50156 -17.92608 -17.45427 -16.79650 -16.12754 -15.73114 -15.20702 -15.05653 -14.80431 -14.56412 -14.36387 -14.07013 -13.91500 -13.79971 -13.58332 -13.34549 -13.04021 -12.71913 -12.64332 -12.57126 -12.16174 -11.79437 -11.59758 -11.49908 -11.41054 -11.12588 -10.86996 -10.85532 -10.74115 -10.37651 -10.25573 -10.10243 -9.85519 -9.78631 -9.46996 -9.22502 -8.84079 -8.60319 -8.50134 -6.73338 -5.83887 -3.26659 0.01806 0.87411 1.43988 1.80765 2.81897 2.98709 3.34109 3.37904 3.42820 3.44205 3.61218 4.09090 4.44775 4.47836 4.61113 4.73261 4.82057 4.97816 5.13015 5.26167 5.31221 5.32391 5.45165 5.55814 5.62589 5.70434 5.82536 5.90328 5.92572 5.94040 6.03472 6.10429 6.18790 6.23001 6.29457 6.40332 6.57831 6.58421 6.61722 6.70651 6.84006 6.91436 7.11068 7.32078 7.62426 7.70811 7.75656 8.34225 8.39092 9.15569 9.78854 10.34300 11.24054 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.002656 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.550942 B =10538.036580 C =11384.159244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 H 0.083 0.917 4 C 0.151 3.849 5 N -0.591 5.591 6 C -0.254 4.254 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.900 5.900 10 Si 0.901 3.099 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.173 3.827 15 C -0.155 4.155 16 C 0.160 3.840 17 H 0.076 0.924 18 N -0.700 5.700 19 C 0.559 3.441 20 O -0.540 6.540 21 C -0.099 4.099 22 C -0.081 4.081 23 C -0.063 4.063 24 C 0.050 3.950 25 N -0.464 5.464 26 C 0.421 3.579 27 O -0.408 6.408 28 O -0.221 6.221 29 C 0.009 3.991 30 C -0.027 4.027 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.012 0.988 36 H 0.253 0.747 37 H 0.087 0.913 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.401 0.599 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.422 0.578 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 -8.689 9.551 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.140 4.140 3 H 0.102 0.898 4 C 0.024 3.976 5 N -0.314 5.314 6 C -0.383 4.383 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.544 5.544 10 Si 0.731 3.269 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.218 1.218 14 C 0.048 3.952 15 C -0.195 4.195 16 C 0.057 3.943 17 H 0.094 0.906 18 N -0.352 5.352 19 C 0.345 3.655 20 O -0.419 6.419 21 C -0.102 4.102 22 C -0.100 4.100 23 C -0.081 4.081 24 C -0.063 4.063 25 N -0.208 5.208 26 C 0.172 3.828 27 O -0.216 6.216 28 O -0.114 6.114 29 C -0.041 4.041 30 C -0.047 4.047 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.037 0.963 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.239 0.761 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.283 0.717 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.790 -8.643 9.932 18.355 hybrid contribution 1.281 0.063 -0.220 1.301 sum -11.509 -8.580 9.712 17.332 Atomic orbital electron populations 1.21774 0.95684 1.01366 1.01218 1.21962 0.94609 1.00853 0.96598 0.89838 1.20913 0.86133 0.96051 0.94456 1.44081 0.99116 1.71549 1.16612 1.19197 0.98208 1.12347 1.08565 0.91627 1.25021 0.99879 0.95369 0.99241 1.70040 1.21812 1.14598 1.47974 0.86254 0.81753 0.79266 0.79659 1.20266 1.21576 1.21767 1.20740 0.99398 0.92915 0.82186 1.22580 0.94044 1.02078 1.00819 1.20959 0.95213 0.80005 0.98159 0.90618 1.46029 1.66240 1.14515 1.08404 1.17820 0.78117 0.85056 0.84461 1.90775 1.50938 1.69631 1.30572 1.19831 1.02739 0.94928 0.92740 1.21013 0.96844 0.94442 0.97748 1.19971 0.99106 0.93040 0.96025 1.19769 1.01889 0.89833 0.94826 1.71022 1.22154 1.17213 1.10382 1.22512 0.93330 0.83243 0.83707 1.84880 1.37193 1.22495 1.77038 1.84493 1.68440 1.21354 1.37156 1.19753 1.05913 0.92250 0.86165 1.19860 0.96877 0.88094 0.99876 0.93070 0.93200 0.92670 0.92394 0.96992 0.93682 0.89527 0.96348 0.92604 0.91644 0.76135 0.83714 0.83595 0.71722 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.05 37.16 0.34 -1.41 16 2 C -0.12 -1.83 2.67 -90.50 -0.24 -2.07 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 4 C 0.15 2.77 5.50 -3.71 -0.02 2.75 16 5 N -0.59 -13.61 3.00 -172.31 -0.52 -14.13 16 6 C -0.25 -6.59 9.58 -15.06 -0.14 -6.73 16 7 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 9 N -0.90 -25.16 11.19 55.49 0.62 -24.54 16 10 Si 0.90 21.08 29.59 -169.99 -5.03 16.06 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.17 3.90 5.05 -3.71 -0.02 3.88 16 15 C -0.16 -2.93 5.77 -26.61 -0.15 -3.08 16 16 C 0.16 2.58 2.22 -67.89 -0.15 2.43 16 17 H 0.08 1.23 7.57 -51.93 -0.39 0.84 16 18 N -0.70 -10.33 3.55 -54.82 -0.19 -10.52 16 19 C 0.56 8.53 7.72 -12.48 -0.10 8.44 16 20 O -0.54 -9.78 15.99 5.28 0.08 -9.69 16 21 C -0.10 -1.28 5.88 -104.92 -0.62 -1.90 16 22 C -0.08 -0.89 9.46 -39.59 -0.37 -1.26 16 23 C -0.06 -0.68 10.03 -39.68 -0.40 -1.08 16 24 C 0.05 0.62 7.23 -84.62 -0.61 0.01 16 25 N -0.46 -5.72 11.36 -12.72 -0.14 -5.87 16 26 C 0.42 4.43 9.54 52.31 0.50 4.93 16 27 O -0.41 -2.77 13.62 -40.30 -0.55 -3.31 16 28 O -0.22 -2.60 10.79 -20.48 -0.22 -2.82 16 29 C 0.01 0.11 7.41 -38.75 -0.29 -0.18 16 30 C -0.03 -0.34 9.60 -39.13 -0.38 -0.72 16 31 H 0.05 0.59 7.53 -51.93 -0.39 0.20 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 35 H 0.01 0.22 6.65 -51.93 -0.35 -0.13 16 36 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.09 2.26 6.03 -51.93 -0.31 1.95 16 38 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.40 5.47 4.73 -40.82 -0.19 5.28 16 42 H 0.15 1.38 6.37 -52.48 -0.33 1.04 16 43 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.42 0.29 9.06 45.56 0.41 0.70 16 45 H 0.15 1.85 7.64 -52.49 -0.40 1.45 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -32.70 368.23 -8.00 -40.70 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.86 Total: 4.55 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.74 Total: 4.04 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.23 Total: -55.06 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.69 Total: -15.83 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.70 -8.00 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945225772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.613 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds