Wall clock time and date at job start Sat Apr 11 2020 07:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52591 * 2 1 4 4 C 1.53197 * 109.49298 * 239.92777 * 2 1 3 5 5 N 1.46930 * 108.77228 * 185.41127 * 4 2 1 6 6 C 1.36937 * 120.63595 * 233.62774 * 5 4 2 7 7 H 1.08009 * 119.99440 * 27.65417 * 6 5 4 8 8 C 1.38803 * 120.00530 * 207.66636 * 6 5 4 9 9 N 1.31619 * 120.00080 * 17.36290 * 8 6 5 10 10 Si 1.86797 * 120.00079 * 197.36919 * 8 6 5 11 11 H 1.48501 * 109.47213 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47373 * 119.99468 * 10 8 6 13 13 H 1.48498 * 109.47465 * 239.99698 * 10 8 6 14 14 C 1.46935 * 118.73872 * 53.60656 * 5 4 2 15 15 C 1.53192 * 108.77544 * 306.39125 * 14 5 4 16 16 C 1.53034 * 109.50011 * 120.05650 * 2 1 3 17 17 H 1.08999 * 109.48342 * 301.31634 * 16 2 1 18 18 N 1.46494 * 109.43732 * 61.27555 * 16 2 1 19 19 C 1.34773 * 120.00410 * 205.05312 * 18 16 2 20 20 O 1.21595 * 119.99970 * 0.02562 * 19 18 16 21 21 C 1.47520 * 119.99818 * 179.97438 * 19 18 16 22 22 C 1.40088 * 119.93929 * 0.02562 * 21 19 18 23 23 C 1.36289 * 120.39156 * 179.97438 * 22 21 19 24 24 C 1.39856 * 120.04334 * 0.02562 * 23 22 21 25 25 N 1.35812 * 133.52288 * 179.97438 * 24 23 22 26 26 C 1.30778 * 108.79804 * 179.97438 * 25 24 23 27 27 O 1.35099 * 124.91863 * 180.02562 * 26 25 24 28 28 O 1.34316 * 110.15642 * 0.02562 * 26 25 24 29 29 C 1.35307 * 108.13274 * 0.02562 * 28 26 25 30 30 C 1.38107 * 133.76573 * 180.28596 * 29 28 26 31 31 H 1.08998 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46837 * 300.07725 * 1 2 3 33 33 H 1.09000 * 109.47164 * 60.07684 * 1 2 3 34 34 H 1.08991 * 109.59010 * 65.62622 * 4 2 1 35 35 H 1.09004 * 109.70066 * 305.26344 * 4 2 1 36 36 H 0.97006 * 120.00073 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.58626 * 186.60013 * 14 5 4 38 38 H 1.09003 * 109.58247 * 66.17798 * 14 5 4 39 39 H 1.08992 * 109.49723 * 174.58324 * 15 14 5 40 40 H 1.09006 * 109.49561 * 294.65338 * 15 14 5 41 41 H 0.97007 * 119.99558 * 25.05486 * 18 16 2 42 42 H 1.08008 * 119.80290 * 359.97438 * 22 21 19 43 43 H 1.08004 * 119.98200 * 179.97438 * 23 22 21 44 44 H 0.96693 * 114.00105 * 90.02869 * 27 26 25 45 45 H 1.07996 * 120.18521 * 359.93002 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 -1.2498 5 7 3.5045 -0.8290 -1.1698 6 6 4.2936 -0.3783 -2.1943 7 1 3.9464 0.4218 -2.8315 8 6 5.5393 -0.9496 -2.4140 9 7 5.8285 -2.1205 -1.8869 10 14 6.8055 -0.0567 -3.4574 11 1 6.2378 1.2315 -3.9301 12 1 8.0204 0.2058 -2.6448 13 1 7.1648 -0.8977 -4.6274 14 6 4.1053 -1.4267 0.0305 15 6 3.5709 -0.6951 1.2658 16 6 2.0408 -0.7225 1.2486 17 1 1.6587 -0.2236 2.1392 18 7 1.5777 -2.1122 1.2314 19 6 1.4483 -2.7938 2.3868 20 8 1.7156 -2.2552 3.4437 21 6 0.9814 -4.1931 2.3694 22 6 0.6734 -4.8122 1.1511 23 6 0.2418 -6.1047 1.1242 24 6 0.1033 -6.8216 2.3171 25 7 -0.2936 -8.0877 2.6066 26 6 -0.2418 -8.2598 3.9020 27 8 -0.5676 -9.4030 4.5439 28 8 0.1824 -7.1353 4.5017 29 6 0.4095 -6.2071 3.5437 30 6 0.8511 -4.8987 3.5667 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5150 0.8893 33 1 -0.3633 0.5126 -0.8907 34 1 1.7637 -0.1577 -2.1389 35 1 1.6053 -1.7214 -1.3008 36 1 6.6993 -2.5197 -2.0402 37 1 5.1896 -1.3246 -0.0141 38 1 3.8375 -2.4818 0.0863 39 1 3.9335 -1.1899 2.1668 40 1 3.9164 0.3387 1.2542 41 1 1.3642 -2.5419 0.3883 42 1 0.7786 -4.2621 0.2276 43 1 0.0058 -6.5754 0.1813 44 1 0.1733 -10.0133 4.6608 45 1 1.0926 -4.4236 4.5060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000945225772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:27:54 Heat of formation + Delta-G solvation = -31.093204 kcal Electronic energy + Delta-G solvation = -30297.234459 eV Core-core repulsion = 26088.517761 eV Total energy + Delta-G solvation = -4208.716699 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.48294 -41.48894 -39.71794 -39.03006 -38.27377 -36.00399 -35.83172 -34.04850 -32.85355 -32.06391 -31.92519 -30.41519 -27.35293 -27.06157 -25.35152 -24.74348 -23.73625 -23.12780 -22.76517 -22.15968 -20.43430 -20.16219 -19.57990 -18.84648 -18.64370 -18.26110 -17.14565 -16.97745 -16.75484 -16.25258 -16.00235 -15.68279 -15.53627 -15.35023 -15.28838 -15.05393 -14.68669 -14.57599 -14.47826 -14.17575 -13.62800 -13.51521 -13.34959 -13.12377 -12.94979 -12.68910 -12.65021 -12.51112 -12.48427 -12.33391 -12.13036 -11.92174 -11.75139 -11.62587 -11.44666 -11.14167 -11.03235 -10.50251 -10.14086 -10.04255 -9.61621 -8.62561 -7.83741 -5.27498 -0.88451 -0.02013 0.64325 0.91272 1.47120 1.50854 1.59403 1.77645 2.05841 2.33259 2.53727 2.59301 3.20461 3.31660 3.56110 3.72180 3.73552 3.79308 3.85809 3.90771 4.10516 4.12228 4.18277 4.45253 4.54244 4.64144 4.70273 4.75065 4.81415 4.82329 4.86807 4.98933 5.03107 5.04793 5.07092 5.14745 5.22510 5.31578 5.36496 5.47731 5.54349 5.60397 5.69235 5.78951 6.14057 6.26436 6.42463 6.51498 7.14786 7.18761 7.90801 8.40958 9.21757 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.015284 B = 0.002656 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.550942 B =10538.036580 C =11384.159244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 H 0.078 0.922 4 C 0.148 3.852 5 N -0.607 5.607 6 C -0.255 4.255 7 H 0.068 0.932 8 C -0.049 4.049 9 N -0.931 5.931 10 Si 0.959 3.041 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.294 1.294 14 C 0.186 3.814 15 C -0.144 4.144 16 C 0.167 3.833 17 H 0.081 0.919 18 N -0.695 5.695 19 C 0.562 3.438 20 O -0.573 6.573 21 C -0.112 4.112 22 C -0.072 4.072 23 C -0.061 4.061 24 C 0.045 3.955 25 N -0.489 5.489 26 C 0.438 3.562 27 O -0.402 6.402 28 O -0.227 6.227 29 C -0.006 4.006 30 C -0.028 4.028 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.247 0.753 37 H 0.046 0.954 38 H 0.005 0.995 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.408 0.592 42 H 0.162 0.838 43 H 0.169 0.831 44 H 0.449 0.551 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.290 -8.982 9.229 19.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.127 4.127 3 H 0.096 0.904 4 C 0.022 3.978 5 N -0.330 5.330 6 C -0.386 4.386 7 H 0.086 0.914 8 C -0.245 4.245 9 N -0.577 5.577 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.223 1.223 13 H -0.221 1.221 14 C 0.060 3.940 15 C -0.185 4.185 16 C 0.063 3.937 17 H 0.099 0.901 18 N -0.346 5.346 19 C 0.350 3.650 20 O -0.454 6.454 21 C -0.115 4.115 22 C -0.092 4.092 23 C -0.080 4.080 24 C -0.068 4.068 25 N -0.233 5.233 26 C 0.189 3.811 27 O -0.215 6.215 28 O -0.122 6.122 29 C -0.055 4.055 30 C -0.048 4.048 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.045 0.955 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.023 0.977 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.246 0.754 42 H 0.179 0.821 43 H 0.187 0.813 44 H 0.316 0.684 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.690 -8.951 9.603 19.701 hybrid contribution 1.808 0.029 -0.042 1.808 sum -12.882 -8.922 9.561 18.356 Atomic orbital electron populations 1.21713 0.92682 1.02459 1.02422 1.21805 0.96909 0.99753 0.94225 0.90386 1.21114 0.83339 0.97227 0.96092 1.44273 1.01111 1.71522 1.16088 1.19504 0.98680 1.11875 1.08513 0.91428 1.25682 1.01667 0.96097 1.01009 1.70175 1.21736 1.15976 1.49808 0.85335 0.79357 0.78552 0.77951 1.19093 1.22311 1.22122 1.20425 0.97125 0.92656 0.83749 1.22411 0.96403 1.01110 0.98536 1.20816 0.92917 0.81025 0.98940 0.90104 1.45924 1.65942 1.14032 1.08720 1.18108 0.77278 0.85758 0.83898 1.90756 1.52446 1.70539 1.31651 1.19643 1.04318 0.93839 0.93713 1.21143 0.95938 0.94582 0.97528 1.20225 0.98432 0.92780 0.96531 1.20069 1.01471 0.90048 0.95250 1.71047 1.23749 1.17239 1.11221 1.22736 0.91114 0.83673 0.83578 1.84862 1.38711 1.21580 1.76364 1.84498 1.68672 1.21715 1.37273 1.19754 1.06789 0.92377 0.86599 1.19836 0.96830 0.88335 0.99802 0.92063 0.92162 0.91354 0.92251 0.95503 0.94388 0.93598 0.97715 0.93305 0.91953 0.75352 0.82073 0.81338 0.68447 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.05 71.98 0.65 -2.21 16 2 C -0.11 -3.03 2.67 -10.72 -0.03 -3.06 16 3 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.15 5.16 5.50 86.36 0.47 5.64 16 5 N -0.61 -27.83 3.00 -699.06 -2.09 -29.93 16 6 C -0.26 -13.25 9.58 84.03 0.81 -12.44 16 7 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 8 C -0.05 -2.64 4.91 84.86 0.42 -2.23 16 9 N -0.93 -53.31 11.19 21.65 0.24 -53.07 16 10 Si 0.96 43.84 29.59 68.60 2.03 45.87 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 14 C 0.19 8.56 5.05 86.36 0.44 9.00 16 15 C -0.14 -5.49 5.77 30.67 0.18 -5.31 16 16 C 0.17 5.19 2.22 45.02 0.10 5.29 16 17 H 0.08 2.51 7.57 -2.39 -0.02 2.49 16 18 N -0.69 -19.63 3.55 -445.61 -1.58 -21.21 16 19 C 0.56 16.80 7.72 86.69 0.67 17.47 16 20 O -0.57 -20.71 15.99 -4.02 -0.06 -20.77 16 21 C -0.11 -2.81 5.88 -20.06 -0.12 -2.92 16 22 C -0.07 -1.48 9.46 22.26 0.21 -1.27 16 23 C -0.06 -1.21 10.03 22.21 0.22 -0.99 16 24 C 0.04 1.05 7.23 39.49 0.29 1.34 16 25 N -0.49 -11.31 11.36 -422.44 -4.80 -16.11 16 26 C 0.44 8.51 9.54 130.40 1.24 9.75 16 27 O -0.40 -4.52 13.62 -61.47 -0.84 -5.35 16 28 O -0.23 -5.14 10.79 9.47 0.10 -5.04 16 29 C -0.01 -0.14 7.41 22.81 0.17 0.03 16 30 C -0.03 -0.71 9.60 22.56 0.22 -0.49 16 31 H 0.06 1.19 7.53 -2.39 -0.02 1.17 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 35 H 0.03 0.88 6.65 -2.38 -0.02 0.86 16 36 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 37 H 0.05 2.48 6.03 -2.39 -0.01 2.47 16 38 H 0.00 0.23 7.74 -2.39 -0.02 0.21 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.41 10.37 4.73 -92.70 -0.44 9.94 16 42 H 0.16 2.69 6.37 -2.91 -0.02 2.67 16 43 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 44 H 0.45 -0.61 9.06 -74.06 -0.67 -1.28 16 45 H 0.15 3.71 7.64 -2.91 -0.02 3.68 16 Total: -1.00 -71.28 368.23 -1.11 -72.39 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.05 Total: 15.61 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 5.93 Total: 17.61 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -8.23 Total: -120.32 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.80 Total: -31.16 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.28 -1.11 -72.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000945225772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.301 kcal (2) G-P(sol) polarization free energy of solvation -71.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds