Wall clock time and date at job start Sat Apr 11 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70725 * 2 1 4 4 C 1.52770 * 109.51164 * 239.87929 * 2 1 3 5 5 C 1.53033 * 109.38176 * 185.70893 * 4 2 1 6 6 H 1.09002 * 109.45782 * 181.26237 * 5 4 2 7 7 N 1.46497 * 109.46443 * 301.22199 * 5 4 2 8 8 C 1.34782 * 119.99971 * 205.07402 * 7 5 4 9 9 O 1.21279 * 120.00018 * 359.97438 * 8 7 5 10 10 C 1.50706 * 119.99657 * 179.97438 * 8 7 5 11 11 N 1.46497 * 109.46857 * 179.97438 * 10 8 7 12 12 C 1.46452 * 126.07996 * 85.00236 * 11 10 8 13 13 C 1.53205 * 113.70200 * 178.24703 * 12 11 10 14 14 C 1.55561 * 106.24058 * 27.54543 * 13 12 11 15 15 S 1.67286 * 126.08519 * 264.69109 * 11 10 8 16 16 O 1.42099 * 105.40724 * 274.99639 * 15 11 10 17 17 O 1.42097 * 105.40929 * 45.25866 * 15 11 10 18 18 C 1.53048 * 109.53931 * 61.24513 * 5 4 2 19 19 C 1.53193 * 109.30737 * 298.62871 * 18 5 4 20 20 N 1.46923 * 108.77606 * 54.63846 * 19 18 5 21 21 C 1.36936 * 120.63067 * 126.36614 * 20 19 18 22 22 H 1.08006 * 119.99808 * 209.57523 * 21 20 19 23 23 C 1.38813 * 120.00319 * 29.57038 * 21 20 19 24 24 N 1.31622 * 119.99385 * 15.57847 * 23 21 20 25 25 Si 1.86793 * 120.00094 * 195.57528 * 23 21 20 26 26 H 1.48504 * 109.47205 * 265.65456 * 25 23 21 27 27 H 1.48493 * 109.47478 * 25.65706 * 25 23 21 28 28 H 1.48502 * 109.46798 * 145.65857 * 25 23 21 29 29 H 1.08995 * 109.46922 * 299.65038 * 1 2 3 30 30 H 1.08999 * 109.46678 * 59.64737 * 1 2 3 31 31 H 1.08997 * 109.47533 * 179.64140 * 1 2 3 32 32 H 1.08993 * 109.55922 * 65.67087 * 4 2 1 33 33 H 1.09000 * 109.35609 * 305.61943 * 4 2 1 34 34 H 0.96996 * 120.00013 * 25.06240 * 7 5 4 35 35 H 1.08998 * 109.47000 * 299.99645 * 10 8 7 36 36 H 1.08998 * 109.46950 * 59.99985 * 10 8 7 37 37 H 1.08996 * 108.64575 * 299.35304 * 12 11 10 38 38 H 1.08998 * 108.64513 * 57.31240 * 12 11 10 39 39 H 1.09006 * 110.10073 * 146.74456 * 13 12 11 40 40 H 1.09001 * 110.09474 * 268.35163 * 13 12 11 41 41 H 1.09000 * 111.36248 * 80.62211 * 14 13 12 42 42 H 1.09005 * 111.36776 * 205.40833 * 14 13 12 43 43 H 1.09000 * 109.49483 * 178.68042 * 18 5 4 44 44 H 1.08997 * 109.49714 * 58.58348 * 18 5 4 45 45 H 1.09003 * 109.58976 * 294.84511 * 19 18 5 46 46 H 1.09000 * 109.58243 * 174.42511 * 19 18 5 47 47 H 0.97001 * 119.99705 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1725 6 1 3.9314 -1.3418 -2.0712 7 7 4.1578 0.4892 -1.0743 8 6 5.4216 0.6972 -1.4941 9 8 6.0672 -0.2214 -1.9526 10 6 6.0324 2.0713 -1.3935 11 7 7.4028 2.0354 -1.9102 12 6 7.7992 2.1706 -3.3136 13 6 9.3152 2.1332 -3.5317 14 6 9.9019 1.2888 -2.3644 15 16 8.7937 1.8402 -1.0015 16 8 9.1337 3.1429 -0.5471 17 8 8.5102 0.7783 -0.1008 18 6 3.9522 -1.6689 0.0583 19 6 3.4643 -0.9520 1.3212 20 7 2.0225 -0.6996 1.1945 21 6 1.1535 -1.1135 2.1686 22 1 0.1372 -1.3725 1.9109 23 6 1.5789 -1.2002 3.4871 24 7 2.6937 -0.6075 3.8591 25 14 0.5693 -2.1578 4.7332 26 1 -0.3455 -1.2306 5.4466 27 1 -0.2270 -3.1966 4.0318 28 1 1.4778 -2.8074 5.7119 29 1 -0.3633 0.5084 0.8931 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3634 -1.0276 -0.0064 32 1 1.7633 -0.1567 -2.1349 33 1 1.5964 -1.7170 -1.2936 34 1 3.6416 1.2239 -0.7073 35 1 5.4413 2.7754 -1.9790 36 1 6.0460 2.3874 -0.3505 37 1 7.3450 1.3601 -3.8836 38 1 7.4181 3.1185 -3.6936 39 1 9.5446 1.6618 -4.4874 40 1 9.7224 3.1439 -3.5046 41 1 9.7997 0.2207 -2.5565 42 1 10.9394 1.5561 -2.1633 43 1 5.0362 -1.7763 0.0967 44 1 3.4904 -2.6543 -0.0022 45 1 3.9929 -0.0050 1.4311 46 1 3.6503 -1.5799 2.1925 47 1 2.9908 -0.6677 4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947365524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:15 Heat of formation + Delta-G solvation = -67.319146 kcal Electronic energy + Delta-G solvation = -29964.420487 eV Core-core repulsion = 25889.576866 eV Total energy + Delta-G solvation = -4074.843622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -39.78368 -37.96480 -37.33295 -36.81013 -35.92997 -34.22518 -33.33120 -32.32761 -31.22911 -29.73990 -27.90791 -26.40118 -25.97825 -24.86443 -22.36618 -22.02303 -21.04938 -20.50887 -19.02590 -18.59417 -17.54989 -17.17172 -16.92811 -16.33744 -15.89102 -15.57524 -15.19338 -14.95687 -14.73987 -14.57041 -14.00851 -13.98857 -13.69286 -13.54657 -13.35322 -13.13286 -13.03730 -12.65899 -12.41956 -12.16803 -12.02971 -12.01007 -11.83037 -11.78754 -11.39834 -11.21272 -11.16380 -10.97821 -10.68517 -10.64910 -10.60981 -10.38606 -10.12780 -10.05887 -9.99550 -9.64028 -9.26109 -8.92294 -8.54995 -8.42466 -6.60027 -5.74586 -3.18772 0.06112 2.23697 2.90828 3.38919 3.42891 3.46960 3.48354 3.51563 3.60504 4.00381 4.27863 4.51256 4.56509 4.68025 4.92760 5.02728 5.13951 5.19822 5.26209 5.34328 5.38441 5.39449 5.44381 5.48512 5.65332 5.70136 5.71354 6.02106 6.12495 6.24536 6.27536 6.32231 6.39983 6.45577 6.59630 6.68834 6.83902 6.98116 7.05941 7.07538 7.43517 7.74160 7.85177 7.88555 8.49556 8.55489 9.25023 9.88833 10.45424 11.33600 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.002992 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.189596 B = 9356.398653 C =10242.440936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.019 0.981 4 C -0.138 4.138 5 C 0.156 3.844 6 H 0.071 0.929 7 N -0.714 5.714 8 C 0.491 3.509 9 O -0.535 6.535 10 C 0.142 3.858 11 N -0.969 5.969 12 C 0.082 3.918 13 C -0.122 4.122 14 C -0.590 4.590 15 S 2.563 3.437 16 O -0.953 6.953 17 O -0.939 6.939 18 C -0.155 4.155 19 C 0.176 3.824 20 N -0.587 5.587 21 C -0.252 4.252 22 H 0.069 0.931 23 C 0.004 3.996 24 N -0.900 5.900 25 Si 0.899 3.101 26 H -0.289 1.289 27 H -0.280 1.280 28 H -0.290 1.290 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.137 0.863 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.084 0.916 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 7.316 -17.595 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.037 0.963 4 C -0.178 4.178 5 C 0.052 3.948 6 H 0.089 0.911 7 N -0.366 5.366 8 C 0.274 3.726 9 O -0.411 6.411 10 C 0.013 3.987 11 N -0.809 5.809 12 C -0.045 4.045 13 C -0.161 4.161 14 C -0.721 4.721 15 S 2.658 3.342 16 O -0.942 6.942 17 O -0.928 6.928 18 C -0.195 4.195 19 C 0.050 3.950 20 N -0.311 5.311 21 C -0.382 4.382 22 H 0.086 0.914 23 C -0.195 4.195 24 N -0.544 5.544 25 Si 0.729 3.271 26 H -0.216 1.216 27 H -0.205 1.205 28 H -0.217 1.217 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.236 0.764 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.037 0.963 46 H 0.102 0.898 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.034 6.815 -16.703 21.147 hybrid contribution -0.601 -0.380 0.224 0.746 sum 10.432 6.435 -16.479 20.538 Atomic orbital electron populations 1.21805 0.95924 1.01463 1.00243 1.20287 0.93106 0.93146 0.87290 0.96319 1.22291 0.94061 1.02282 0.99160 1.20854 0.92789 0.82471 0.98694 0.91113 1.46139 1.14114 1.12853 1.63531 1.21123 0.82039 0.91230 0.78187 1.90639 1.60852 1.44297 1.45350 1.20808 0.81274 0.95295 1.01286 1.56591 1.17803 1.89661 1.16846 1.21554 0.94912 1.03926 0.84066 1.22377 0.92733 1.01063 0.99921 1.30767 1.14051 1.10740 1.16548 1.06800 0.76439 0.75534 0.75441 1.93649 1.83242 1.38702 1.78634 1.93674 1.81596 1.56270 1.61283 1.22558 1.00134 0.99275 0.97517 1.20699 0.83013 0.97184 0.94056 1.44131 1.03089 1.64975 1.18879 1.19137 0.94902 1.37955 0.86185 0.91383 1.25082 0.97799 0.99648 0.96980 1.70024 1.23731 1.43968 1.16722 0.86341 0.79393 0.79946 0.81421 1.21566 1.20505 1.21652 0.91931 0.94380 0.92738 0.92675 0.90798 0.76383 0.87387 0.87339 0.90339 0.90382 0.87284 0.88777 0.83775 0.84504 0.92588 0.91983 0.96293 0.89759 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.94 37.16 0.29 -2.12 16 2 C 0.17 3.21 3.19 -67.81 -0.22 3.00 16 3 H 0.02 0.36 6.64 -51.93 -0.34 0.02 16 4 C -0.14 -2.25 5.05 -26.83 -0.14 -2.38 16 5 C 0.16 2.68 2.78 -67.89 -0.19 2.50 16 6 H 0.07 1.22 7.58 -51.93 -0.39 0.83 16 7 N -0.71 -11.07 4.26 -53.76 -0.23 -11.29 16 8 C 0.49 7.59 7.86 -10.98 -0.09 7.50 16 9 O -0.53 -9.88 16.09 5.56 0.09 -9.79 16 10 C 0.14 1.65 6.72 -5.19 -0.03 1.62 16 11 N -0.97 -10.87 2.82 -115.58 -0.33 -11.20 16 12 C 0.08 0.63 6.84 -3.96 -0.03 0.60 16 13 C -0.12 -0.67 6.61 -25.26 -0.17 -0.84 16 14 C -0.59 -4.22 7.67 38.52 0.30 -3.93 16 15 S 2.56 31.20 6.19 -107.50 -0.67 30.53 16 16 O -0.95 -13.60 18.14 -57.37 -1.04 -14.64 16 17 O -0.94 -16.16 18.04 -57.37 -1.03 -17.20 16 18 C -0.15 -3.15 5.77 -26.61 -0.15 -3.31 16 19 C 0.18 4.21 5.03 -3.71 -0.02 4.19 16 20 N -0.59 -13.96 2.99 -165.02 -0.49 -14.45 16 21 C -0.25 -6.64 8.58 -15.06 -0.13 -6.77 16 22 H 0.07 1.75 6.22 -52.48 -0.33 1.42 16 23 C 0.00 0.10 4.94 -17.43 -0.09 0.02 16 24 N -0.90 -26.06 11.22 55.49 0.62 -25.44 16 25 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.99 7.44 -51.93 -0.39 0.60 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.40 5.70 6.88 -40.82 -0.28 5.42 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.14 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.02 0.48 7.74 -51.93 -0.40 0.07 16 46 H 0.08 2.32 6.13 -51.93 -0.32 2.00 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -36.90 380.04 -10.51 -47.41 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.48 Total: 3.68 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.65 Total: 0.07 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: -0.43 Total: -62.39 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.99 Total: -41.62 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: 31.20 SS G_CDS: -0.67 Total: 30.53 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.90 -10.51 -47.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947365524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.912 kcal (2) G-P(sol) polarization free energy of solvation -36.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds