Wall clock time and date at job start Sat Apr 11 2020 07:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.70725 * 2 1 4 4 C 1.52770 * 109.51164 * 239.87929 * 2 1 3 5 5 C 1.53033 * 109.38176 * 185.70893 * 4 2 1 6 6 H 1.09002 * 109.45782 * 181.26237 * 5 4 2 7 7 N 1.46497 * 109.46443 * 301.22199 * 5 4 2 8 8 C 1.34782 * 119.99971 * 205.07402 * 7 5 4 9 9 O 1.21279 * 120.00018 * 359.97438 * 8 7 5 10 10 C 1.50706 * 119.99657 * 179.97438 * 8 7 5 11 11 N 1.46497 * 109.46857 * 179.97438 * 10 8 7 12 12 C 1.46452 * 126.07996 * 85.00236 * 11 10 8 13 13 C 1.53205 * 113.70200 * 178.24703 * 12 11 10 14 14 C 1.55561 * 106.24058 * 27.54543 * 13 12 11 15 15 S 1.67286 * 126.08519 * 264.69109 * 11 10 8 16 16 O 1.42099 * 105.40724 * 274.99639 * 15 11 10 17 17 O 1.42097 * 105.40929 * 45.25866 * 15 11 10 18 18 C 1.53048 * 109.53931 * 61.24513 * 5 4 2 19 19 C 1.53193 * 109.30737 * 298.62871 * 18 5 4 20 20 N 1.46923 * 108.77606 * 54.63846 * 19 18 5 21 21 C 1.36936 * 120.63067 * 126.36614 * 20 19 18 22 22 H 1.08006 * 119.99808 * 209.57523 * 21 20 19 23 23 C 1.38813 * 120.00319 * 29.57038 * 21 20 19 24 24 N 1.31622 * 119.99385 * 15.57847 * 23 21 20 25 25 Si 1.86793 * 120.00094 * 195.57528 * 23 21 20 26 26 H 1.48504 * 109.47205 * 265.65456 * 25 23 21 27 27 H 1.48493 * 109.47478 * 25.65706 * 25 23 21 28 28 H 1.48502 * 109.46798 * 145.65857 * 25 23 21 29 29 H 1.08995 * 109.46922 * 299.65038 * 1 2 3 30 30 H 1.08999 * 109.46678 * 59.64737 * 1 2 3 31 31 H 1.08997 * 109.47533 * 179.64140 * 1 2 3 32 32 H 1.08993 * 109.55922 * 65.67087 * 4 2 1 33 33 H 1.09000 * 109.35609 * 305.61943 * 4 2 1 34 34 H 0.96996 * 120.00013 * 25.06240 * 7 5 4 35 35 H 1.08998 * 109.47000 * 299.99645 * 10 8 7 36 36 H 1.08998 * 109.46950 * 59.99985 * 10 8 7 37 37 H 1.08996 * 108.64575 * 299.35304 * 12 11 10 38 38 H 1.08998 * 108.64513 * 57.31240 * 12 11 10 39 39 H 1.09006 * 110.10073 * 146.74456 * 13 12 11 40 40 H 1.09001 * 110.09474 * 268.35163 * 13 12 11 41 41 H 1.09000 * 111.36248 * 80.62211 * 14 13 12 42 42 H 1.09005 * 111.36776 * 205.40833 * 14 13 12 43 43 H 1.09000 * 109.49483 * 178.68042 * 18 5 4 44 44 H 1.08997 * 109.49714 * 58.58348 * 18 5 4 45 45 H 1.09003 * 109.58976 * 294.84511 * 19 18 5 46 46 H 1.09000 * 109.58243 * 174.42511 * 19 18 5 47 47 H 0.97001 * 119.99705 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8463 -1.1725 6 1 3.9314 -1.3418 -2.0712 7 7 4.1578 0.4892 -1.0743 8 6 5.4216 0.6972 -1.4941 9 8 6.0672 -0.2214 -1.9526 10 6 6.0324 2.0713 -1.3935 11 7 7.4028 2.0354 -1.9102 12 6 7.7992 2.1706 -3.3136 13 6 9.3152 2.1332 -3.5317 14 6 9.9019 1.2888 -2.3644 15 16 8.7937 1.8402 -1.0015 16 8 9.1337 3.1429 -0.5471 17 8 8.5102 0.7783 -0.1008 18 6 3.9522 -1.6689 0.0583 19 6 3.4643 -0.9520 1.3212 20 7 2.0225 -0.6996 1.1945 21 6 1.1535 -1.1135 2.1686 22 1 0.1372 -1.3725 1.9109 23 6 1.5789 -1.2002 3.4871 24 7 2.6937 -0.6075 3.8591 25 14 0.5693 -2.1578 4.7332 26 1 -0.3455 -1.2306 5.4466 27 1 -0.2270 -3.1966 4.0318 28 1 1.4778 -2.8074 5.7119 29 1 -0.3633 0.5084 0.8931 30 1 -0.3633 0.5193 -0.8868 31 1 -0.3634 -1.0276 -0.0064 32 1 1.7633 -0.1567 -2.1349 33 1 1.5964 -1.7170 -1.2936 34 1 3.6416 1.2239 -0.7073 35 1 5.4413 2.7754 -1.9790 36 1 6.0460 2.3874 -0.3505 37 1 7.3450 1.3601 -3.8836 38 1 7.4181 3.1185 -3.6936 39 1 9.5446 1.6618 -4.4874 40 1 9.7224 3.1439 -3.5046 41 1 9.7997 0.2207 -2.5565 42 1 10.9394 1.5561 -2.1633 43 1 5.0362 -1.7763 0.0967 44 1 3.4904 -2.6543 -0.0022 45 1 3.9929 -0.0050 1.4311 46 1 3.6503 -1.5799 2.1925 47 1 2.9908 -0.6677 4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947365524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:14 Heat of formation + Delta-G solvation = -96.348029 kcal Electronic energy + Delta-G solvation = -29965.679274 eV Core-core repulsion = 25889.576866 eV Total energy + Delta-G solvation = -4076.102409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10233 -39.32450 -38.32267 -37.73414 -36.96723 -35.82137 -34.18311 -34.01568 -32.80496 -31.43491 -28.85898 -27.88429 -26.92595 -26.56936 -23.81276 -22.95082 -22.42333 -21.97180 -20.19707 -19.96070 -18.59260 -18.25845 -17.99611 -17.79945 -17.09852 -16.82786 -16.64695 -16.09126 -15.83917 -15.69409 -15.53628 -15.48613 -15.05829 -14.74493 -14.54367 -14.16785 -14.11155 -13.97855 -13.75824 -13.32222 -13.23865 -13.16538 -13.08681 -12.85136 -12.75585 -12.64440 -12.45623 -12.41354 -12.32130 -12.15299 -11.99423 -11.96888 -11.68141 -11.41016 -11.38341 -11.11221 -10.96724 -10.50390 -9.96058 -9.83150 -8.58000 -7.81665 -5.26987 -0.78161 1.40548 1.45441 1.48344 1.56666 1.70566 2.35288 2.53531 2.62596 2.93885 3.33799 3.34854 3.61731 3.64136 3.83033 3.96560 4.03893 4.05146 4.12868 4.23958 4.30476 4.44788 4.45672 4.56368 4.63971 4.69390 4.70440 4.80398 4.90088 4.96909 4.99276 5.01299 5.06822 5.13512 5.14967 5.20448 5.42804 5.50646 5.56763 5.58983 5.66626 5.74464 5.78127 6.45263 6.66086 7.20026 7.33730 7.93536 8.44695 9.24592 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.002992 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.189596 B = 9356.398653 C =10242.440936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.159 3.841 3 H 0.028 0.972 4 C -0.123 4.123 5 C 0.163 3.837 6 H 0.078 0.922 7 N -0.712 5.712 8 C 0.486 3.514 9 O -0.568 6.568 10 C 0.140 3.860 11 N -0.974 5.974 12 C 0.071 3.929 13 C -0.119 4.119 14 C -0.553 4.553 15 S 2.536 3.464 16 O -0.986 6.986 17 O -1.008 7.008 18 C -0.143 4.143 19 C 0.189 3.811 20 N -0.602 5.602 21 C -0.246 4.246 22 H 0.077 0.923 23 C -0.056 4.056 24 N -0.937 5.937 25 Si 0.958 3.042 26 H -0.286 1.286 27 H -0.268 1.268 28 H -0.301 1.301 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.408 0.592 35 H 0.153 0.847 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.150 0.850 42 H 0.170 0.830 43 H 0.037 0.963 44 H 0.060 0.940 45 H -0.002 1.002 46 H 0.040 0.960 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.077 8.307 -21.428 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 H 0.045 0.955 4 C -0.162 4.162 5 C 0.058 3.942 6 H 0.096 0.904 7 N -0.365 5.365 8 C 0.271 3.729 9 O -0.446 6.446 10 C 0.011 3.989 11 N -0.814 5.814 12 C -0.054 4.054 13 C -0.157 4.157 14 C -0.689 4.689 15 S 2.638 3.362 16 O -0.976 6.976 17 O -0.998 6.998 18 C -0.183 4.183 19 C 0.063 3.937 20 N -0.326 5.326 21 C -0.376 4.376 22 H 0.094 0.906 23 C -0.250 4.250 24 N -0.584 5.584 25 Si 0.788 3.212 26 H -0.213 1.213 27 H -0.193 1.193 28 H -0.228 1.228 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.090 0.910 34 H 0.244 0.756 35 H 0.170 0.830 36 H 0.121 0.879 37 H 0.092 0.908 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.133 0.867 41 H 0.169 0.831 42 H 0.187 0.813 43 H 0.056 0.944 44 H 0.078 0.922 45 H 0.016 0.984 46 H 0.059 0.941 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 10.589 7.842 -20.535 24.399 hybrid contribution -0.429 -0.681 1.280 1.512 sum 10.160 7.161 -19.255 22.919 Atomic orbital electron populations 1.21741 0.94481 1.01351 1.01190 1.20603 0.94367 0.93377 0.86289 0.95462 1.22152 0.92613 1.02422 0.99011 1.20699 0.93859 0.82935 0.96744 0.90402 1.46105 1.14507 1.12316 1.63534 1.21865 0.81563 0.92438 0.77027 1.90612 1.61451 1.45718 1.46851 1.20936 0.82127 0.93669 1.02155 1.56521 1.17017 1.89381 1.18449 1.21890 0.96661 1.05107 0.81736 1.22602 0.90846 1.02176 1.00126 1.30574 1.13830 1.11383 1.13072 1.07264 0.77766 0.74388 0.76801 1.93597 1.83804 1.39711 1.80474 1.93591 1.83246 1.57784 1.65130 1.22378 0.98721 0.99521 0.97716 1.20335 0.83724 0.95569 0.94049 1.44354 1.02485 1.65837 1.19950 1.19499 0.95318 1.36223 0.86607 0.90557 1.25799 0.99024 1.01247 0.98966 1.70191 1.25695 1.46135 1.16387 0.85389 0.77866 0.78831 0.79153 1.21303 1.19309 1.22810 0.94139 0.90243 0.93384 0.88677 0.90985 0.75576 0.82959 0.87918 0.90835 0.87804 0.84110 0.86728 0.83137 0.81263 0.94418 0.92175 0.98397 0.94136 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.94 71.98 0.57 -3.69 16 2 C 0.16 5.78 3.19 44.83 0.14 5.92 16 3 H 0.03 0.98 6.64 -2.39 -0.02 0.96 16 4 C -0.12 -3.64 5.05 30.53 0.15 -3.49 16 5 C 0.16 5.41 2.78 45.02 0.13 5.54 16 6 H 0.08 2.55 7.58 -2.39 -0.02 2.54 16 7 N -0.71 -21.44 4.26 -442.40 -1.89 -23.33 16 8 C 0.49 14.81 7.86 87.66 0.69 15.50 16 9 O -0.57 -20.98 16.09 -3.02 -0.05 -21.03 16 10 C 0.14 3.14 6.72 85.64 0.58 3.71 16 11 N -0.97 -20.82 2.82 -519.60 -1.47 -22.28 16 12 C 0.07 0.87 6.84 86.46 0.59 1.46 16 13 C -0.12 -0.80 6.61 31.55 0.21 -0.59 16 14 C -0.55 -6.35 7.67 72.86 0.56 -5.79 16 15 S 2.54 62.42 6.19 -56.49 -0.35 62.07 16 16 O -0.99 -28.67 18.14 -127.81 -2.32 -30.99 16 17 O -1.01 -37.21 18.04 -127.81 -2.31 -39.52 16 18 C -0.14 -6.00 5.77 30.67 0.18 -5.83 16 19 C 0.19 9.47 5.03 86.36 0.43 9.91 16 20 N -0.60 -28.90 2.99 -676.00 -2.02 -30.93 16 21 C -0.25 -13.08 8.58 84.03 0.72 -12.36 16 22 H 0.08 3.88 6.22 -2.91 -0.02 3.86 16 23 C -0.06 -3.12 4.94 84.86 0.42 -2.71 16 24 N -0.94 -56.85 11.22 21.65 0.24 -56.61 16 25 Si 0.96 45.60 29.58 68.60 2.03 47.63 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 29 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.05 1.62 7.44 -2.39 -0.02 1.60 16 32 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.41 11.08 6.88 -92.71 -0.64 10.45 16 35 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.14 0.21 8.14 -2.38 -0.02 0.19 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.17 0.94 8.14 -2.38 -0.02 0.92 16 43 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.00 -0.11 7.74 -2.39 -0.02 -0.13 16 46 H 0.04 2.37 6.13 -2.39 -0.01 2.35 16 47 H 0.24 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -86.43 380.04 -2.42 -88.85 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.34 Total: 18.53 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: 5.37 Total: 7.60 kcal Atomic # 7 Polarization: -128.01 SS G_CDS: -5.13 Total: -133.14 kcal Atomic # 8 Polarization: -86.86 SS G_CDS: -4.67 Total: -91.53 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Atomic # 16 Polarization: 62.42 SS G_CDS: -0.35 Total: 62.07 kcal Total: -86.43 -2.42 -88.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947365524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.503 kcal (2) G-P(sol) polarization free energy of solvation -86.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds