Wall clock time and date at job start Sat Apr 11 2020 07:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.69973 * 2 1 4 4 C 1.53198 * 109.58558 * 120.35039 * 2 1 3 5 5 C 1.53046 * 109.31021 * 65.15616 * 4 2 1 6 6 H 1.08995 * 109.44410 * 301.34713 * 5 4 2 7 7 N 1.46499 * 109.45615 * 181.38730 * 5 4 2 8 8 C 1.34775 * 120.00140 * 154.93610 * 7 5 4 9 9 O 1.21574 * 119.99631 * 359.97438 * 8 7 5 10 10 C 1.47707 * 120.00266 * 179.97438 * 8 7 5 11 11 C 1.39995 * 119.96450 * 0.25877 * 10 8 7 12 12 C 1.36598 * 120.45874 * 180.29886 * 11 10 8 13 13 C 1.38801 * 120.21352 * 359.45745 * 12 11 10 14 14 O 1.35181 * 133.65715 * 180.25150 * 13 12 11 15 15 C 1.34394 * 108.24770 * 180.02562 * 14 13 12 16 16 O 1.35171 * 124.90965 * 180.02562 * 15 14 13 17 17 N 1.30593 * 110.18253 * 0.02562 * 15 14 13 18 18 C 1.36216 * 108.67860 * 359.97438 * 17 15 14 19 19 C 1.39216 * 133.66312 * 179.97438 * 18 17 15 20 20 C 1.53036 * 109.53470 * 61.36509 * 5 4 2 21 21 C 1.53189 * 109.31670 * 298.63115 * 20 5 4 22 22 N 1.46921 * 109.59145 * 239.63996 * 2 1 3 23 23 C 1.36945 * 120.62652 * 113.79607 * 22 2 1 24 24 H 1.07996 * 119.99750 * 40.63097 * 23 22 2 25 25 C 1.38814 * 119.99658 * 220.62694 * 23 22 2 26 26 N 1.31621 * 119.99527 * 215.62516 * 25 23 22 27 27 Si 1.86791 * 120.00130 * 35.62745 * 25 23 22 28 28 H 1.48492 * 109.47438 * 84.60913 * 27 25 23 29 29 H 1.48505 * 109.47191 * 204.60843 * 27 25 23 30 30 H 1.48504 * 109.47357 * 324.60484 * 27 25 23 31 31 H 1.08997 * 109.46831 * 180.35641 * 1 2 3 32 32 H 1.08995 * 109.47672 * 300.35388 * 1 2 3 33 33 H 1.08999 * 109.46884 * 60.36104 * 1 2 3 34 34 H 1.09000 * 109.49984 * 305.20362 * 4 2 1 35 35 H 1.08999 * 109.49672 * 185.10866 * 4 2 1 36 36 H 0.97002 * 120.00312 * 334.92475 * 7 5 4 37 37 H 1.07995 * 119.77244 * 0.03403 * 11 10 8 38 38 H 1.08004 * 119.89821 * 179.73158 * 12 11 10 39 39 H 0.96701 * 114.00059 * 359.97009 * 16 15 14 40 40 H 1.07993 * 120.26969 * 0.04474 * 19 18 17 41 41 H 1.08998 * 109.50225 * 58.58596 * 20 5 4 42 42 H 1.09002 * 109.49170 * 178.64821 * 20 5 4 43 43 H 1.08996 * 109.58907 * 174.42783 * 21 20 5 44 44 H 1.09003 * 109.58923 * 294.71289 * 21 20 5 45 45 H 0.97001 * 119.99789 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 1.6415 -2.2041 1.1703 6 1 0.5566 -2.2812 1.0994 7 7 2.1023 -2.8976 2.3756 8 6 1.4742 -4.0151 2.7918 9 8 0.5250 -4.4473 2.1672 10 6 1.9392 -4.7147 4.0067 11 6 3.0290 -4.2133 4.7285 12 6 3.4712 -4.8556 5.8500 13 6 2.8355 -6.0077 6.2916 14 8 3.0327 -6.8393 7.3390 15 6 2.1088 -7.8137 7.2824 16 8 1.9982 -8.8273 8.1698 17 7 1.3333 -7.6396 6.2462 18 6 1.7373 -6.5212 5.5819 19 6 1.2904 -5.8702 4.4353 20 6 2.2801 -2.8463 -0.0633 21 6 1.7693 -2.1411 -1.3236 22 7 2.0226 -0.6996 -1.1943 23 6 2.7045 -0.0208 -2.1689 24 1 3.4310 0.7302 -1.8962 25 6 2.4619 -0.2984 -3.5072 26 7 3.4485 -0.2561 -4.3773 27 14 0.7353 -0.7317 -4.0730 28 1 -0.0284 0.5152 -4.3318 29 1 0.8099 -1.5342 -5.3204 30 1 0.0516 -1.5208 -3.0170 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3634 0.5193 0.8867 33 1 -0.3633 0.5082 -0.8932 34 1 1.6074 -0.2783 2.1369 35 1 3.1297 -0.6502 1.2915 36 1 2.8596 -2.5527 2.8741 37 1 3.5262 -3.3149 4.3938 38 1 4.3155 -4.4632 6.3975 39 1 2.6565 -8.8038 8.8778 40 1 0.4470 -6.2575 3.8832 41 1 3.3641 -2.7473 -0.0050 42 1 2.0129 -3.9023 -0.1031 43 1 2.2946 -2.5275 -2.1969 44 1 0.6993 -2.3177 -1.4330 45 1 3.2790 -0.4504 -5.3125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947416180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:28 Heat of formation + Delta-G solvation = -35.815194 kcal Electronic energy + Delta-G solvation = -29647.870018 eV Core-core repulsion = 25438.948558 eV Total energy + Delta-G solvation = -4208.921459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.46841 -41.34814 -39.81150 -39.23105 -38.24438 -36.13631 -35.86649 -34.36881 -32.77998 -32.31069 -31.69164 -30.39073 -28.51157 -26.28719 -25.40927 -24.52221 -24.01628 -23.31856 -22.96541 -21.99758 -20.72591 -20.20901 -19.25081 -18.81125 -18.40275 -18.39128 -17.59383 -16.90311 -16.55674 -16.30959 -16.06487 -15.91330 -15.52616 -15.23178 -15.16352 -14.91967 -14.87968 -14.76634 -14.43896 -14.35495 -14.11515 -13.87968 -13.74995 -13.53644 -12.99568 -12.73085 -12.69811 -12.51933 -12.40473 -12.22437 -12.18281 -12.02373 -11.62880 -11.61496 -11.49933 -11.21765 -10.93714 -10.46830 -10.17466 -9.88926 -9.48757 -8.64966 -8.26836 -5.49823 -0.43950 -0.35749 0.77266 1.24767 1.36690 1.44340 1.52814 1.71803 1.86468 2.18735 2.47562 2.63969 2.95210 3.25759 3.43617 3.56591 3.76917 3.83632 3.84779 3.98197 4.05438 4.12984 4.30005 4.38752 4.50738 4.54247 4.65245 4.72262 4.81303 4.83618 4.86999 4.95576 5.01789 5.05110 5.07026 5.12753 5.16563 5.19809 5.31655 5.32990 5.36371 5.53647 5.64738 5.78435 5.95679 6.26462 6.55549 6.64310 7.04511 7.20498 7.68199 8.19999 8.93151 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027652 B = 0.002093 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.356901 B =13377.327361 C =13544.362488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.157 3.843 3 H 0.073 0.927 4 C -0.119 4.119 5 C 0.158 3.842 6 H 0.072 0.928 7 N -0.699 5.699 8 C 0.559 3.441 9 O -0.578 6.578 10 C -0.126 4.126 11 C -0.057 4.057 12 C -0.070 4.070 13 C 0.019 3.981 14 O -0.232 6.232 15 C 0.453 3.547 16 O -0.383 6.383 17 N -0.521 5.521 18 C 0.017 3.983 19 C -0.025 4.025 20 C -0.132 4.132 21 C 0.146 3.854 22 N -0.601 5.601 23 C -0.260 4.260 24 H 0.047 0.953 25 C 0.003 3.997 26 N -0.922 5.922 27 Si 0.894 3.106 28 H -0.291 1.291 29 H -0.305 1.305 30 H -0.248 1.248 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.416 0.584 37 H 0.184 0.816 38 H 0.184 0.816 39 H 0.453 0.547 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.020 0.980 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 -10.095 30.562 32.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.091 0.909 4 C -0.158 4.158 5 C 0.054 3.946 6 H 0.090 0.910 7 N -0.350 5.350 8 C 0.347 3.653 9 O -0.459 6.459 10 C -0.130 4.130 11 C -0.076 4.076 12 C -0.088 4.088 13 C -0.031 4.031 14 O -0.128 6.128 15 C 0.203 3.797 16 O -0.188 6.188 17 N -0.269 5.269 18 C -0.093 4.093 19 C -0.045 4.045 20 C -0.172 4.172 21 C 0.020 3.980 22 N -0.324 5.324 23 C -0.390 4.390 24 H 0.065 0.935 25 C -0.197 4.197 26 N -0.564 5.564 27 Si 0.721 3.279 28 H -0.218 1.218 29 H -0.232 1.232 30 H -0.172 1.172 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.255 0.745 37 H 0.201 0.799 38 H 0.201 0.799 39 H 0.316 0.684 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.045 -11.028 29.588 31.593 hybrid contribution 0.177 0.000 -0.436 0.470 sum 1.222 -11.028 29.152 31.192 Atomic orbital electron populations 1.22273 0.97712 1.00888 1.01260 1.20822 0.92297 0.95845 0.85891 0.90893 1.22137 1.02214 0.92563 0.98907 1.20804 0.98832 0.92031 0.82931 0.90975 1.45864 1.34914 1.26205 1.28064 1.18357 0.82192 0.80668 0.84128 1.90798 1.29898 1.66797 1.58380 1.19672 0.99537 0.96842 0.96954 1.21219 0.93593 1.00143 0.92649 1.19956 1.01329 0.90417 0.97142 1.20465 0.99103 0.95490 0.88069 1.84490 1.50291 1.33727 1.44289 1.23072 0.83273 0.83609 0.89726 1.85217 1.57993 1.36610 1.38975 1.70847 1.28624 1.19700 1.07720 1.19534 0.97228 0.93888 0.98625 1.20260 0.98840 0.92976 0.92433 1.22255 1.00897 0.98535 0.95505 1.21128 0.96780 0.84080 0.95983 1.44453 1.64650 1.02806 1.20506 1.18543 1.14569 1.20554 0.85308 0.93512 1.26038 0.98781 0.98490 0.96353 1.70170 1.31821 1.50566 1.03849 0.86549 0.85919 0.77758 0.77689 1.21813 1.23244 1.17171 0.93921 0.90164 0.94912 0.88455 0.90574 0.74486 0.79919 0.79894 0.68383 0.85173 0.91547 0.92928 0.94193 0.96203 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.27 9.03 71.98 0.65 -4.62 16 2 C 0.16 5.46 3.29 44.98 0.15 5.61 16 3 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 4 C -0.12 -3.05 5.02 30.68 0.15 -2.90 16 5 C 0.16 4.48 2.21 45.02 0.10 4.58 16 6 H 0.07 2.36 5.92 -2.39 -0.01 2.34 16 7 N -0.70 -14.87 5.03 -445.41 -2.24 -17.10 16 8 C 0.56 14.41 7.73 86.75 0.67 15.08 16 9 O -0.58 -20.55 15.99 -3.95 -0.06 -20.61 16 10 C -0.13 -2.53 5.87 -20.10 -0.12 -2.64 16 11 C -0.06 -0.64 9.47 22.31 0.21 -0.43 16 12 C -0.07 -0.70 9.99 22.02 0.22 -0.48 16 13 C 0.02 0.31 7.42 22.95 0.17 0.48 16 14 O -0.23 -3.22 10.78 10.03 0.11 -3.11 16 15 C 0.45 7.23 9.53 130.43 1.24 8.47 16 16 O -0.38 -2.93 13.62 -62.23 -0.85 -3.78 16 17 N -0.52 -12.62 11.38 -422.84 -4.81 -17.43 16 18 C 0.02 0.40 7.22 39.24 0.28 0.68 16 19 C -0.02 -0.60 9.64 22.75 0.22 -0.38 16 20 C -0.13 -4.56 5.65 30.67 0.17 -4.39 16 21 C 0.15 6.28 4.18 86.36 0.36 6.65 16 22 N -0.60 -26.72 2.19 -675.24 -1.48 -28.19 16 23 C -0.26 -14.08 9.68 84.03 0.81 -13.27 16 24 H 0.05 2.75 8.06 -2.91 -0.02 2.72 16 25 C 0.00 0.16 4.80 84.86 0.41 0.57 16 26 N -0.92 -56.20 13.97 21.65 0.30 -55.90 16 27 Si 0.89 45.14 27.40 68.60 1.88 47.02 16 28 H -0.29 -14.70 7.11 99.48 0.71 -14.00 16 29 H -0.31 -15.68 7.11 99.48 0.71 -14.98 16 30 H -0.25 -11.93 5.28 99.48 0.53 -11.41 16 31 H 0.04 1.44 5.73 -2.39 -0.01 1.43 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.42 5.36 6.61 -92.71 -0.61 4.75 16 37 H 0.18 0.63 6.37 -2.91 -0.02 0.61 16 38 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 39 H 0.45 -3.02 9.06 -74.06 -0.67 -3.69 16 40 H 0.13 3.59 7.64 -2.91 -0.02 3.57 16 41 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 43 H 0.04 1.92 7.00 -2.39 -0.02 1.90 16 44 H 0.02 0.89 6.10 -2.39 -0.01 0.87 16 45 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -81.74 366.22 -1.84 -83.58 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -0.40 Total: 2.52 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.71 Total: 13.02 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -8.22 Total: -118.63 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.80 Total: -27.51 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Total: -81.74 -1.84 -83.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947416180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.763 kcal (2) G-P(sol) polarization free energy of solvation -81.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds