Wall clock time and date at job start Sat Apr 11 2020 07:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.58383 * 2 1 4 4 C 1.53192 * 109.70240 * 120.35574 * 2 1 3 5 5 C 1.53045 * 109.31190 * 174.49315 * 4 2 1 6 6 H 1.09003 * 109.44469 * 58.64714 * 5 4 2 7 7 N 1.46498 * 109.46109 * 178.61231 * 5 4 2 8 8 C 1.34769 * 120.00089 * 205.07013 * 7 5 4 9 9 O 1.21572 * 120.00268 * 359.97438 * 8 7 5 10 10 C 1.47704 * 120.00158 * 180.02562 * 8 7 5 11 11 C 1.40005 * 119.96768 * 0.33467 * 10 8 7 12 12 C 1.36599 * 120.46310 * 180.32511 * 11 10 8 13 13 C 1.38798 * 120.20710 * 359.63809 * 12 11 10 14 14 O 1.35191 * 133.64498 * 180.02562 * 13 12 11 15 15 C 1.34396 * 108.24238 * 179.97438 * 14 13 12 16 16 O 1.35172 * 124.90629 * 179.97438 * 15 14 13 17 17 N 1.30587 * 110.18177 * 0.02562 * 15 14 13 18 18 C 1.36219 * 108.68348 * 359.97438 * 17 15 14 19 19 C 1.39214 * 133.66800 * 180.02562 * 18 17 15 20 20 C 1.53038 * 109.53748 * 298.63629 * 5 4 2 21 21 C 1.53192 * 109.31597 * 61.36300 * 20 5 4 22 22 N 1.46925 * 109.58533 * 239.71488 * 2 1 3 23 23 C 1.36935 * 120.63567 * 6.48488 * 22 2 1 24 24 H 1.08006 * 119.99568 * 330.14899 * 23 22 2 25 25 C 1.38807 * 120.00211 * 150.15214 * 23 22 2 26 26 N 1.31620 * 120.00015 * 344.49302 * 25 23 22 27 27 Si 1.86800 * 120.00052 * 164.49647 * 25 23 22 28 28 H 1.48505 * 109.46929 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.47112 * 119.99421 * 27 25 23 30 30 H 1.48499 * 109.47304 * 239.99644 * 27 25 23 31 31 H 1.09004 * 109.47025 * 180.28165 * 1 2 3 32 32 H 1.08995 * 109.46907 * 300.28386 * 1 2 3 33 33 H 1.09002 * 109.47016 * 60.28799 * 1 2 3 34 34 H 1.08999 * 109.49816 * 54.54172 * 4 2 1 35 35 H 1.08998 * 109.49665 * 294.44273 * 4 2 1 36 36 H 0.97000 * 119.99636 * 25.06965 * 7 5 4 37 37 H 1.08001 * 119.76603 * 0.02562 * 11 10 8 38 38 H 1.07996 * 119.89701 * 179.66240 * 12 11 10 39 39 H 0.96698 * 114.00201 * 270.02542 * 16 15 14 40 40 H 1.08001 * 120.26773 * 0.02562 * 19 18 17 41 41 H 1.09001 * 109.49852 * 181.31740 * 20 5 4 42 42 H 1.09008 * 109.49631 * 301.41183 * 20 5 4 43 43 H 1.08994 * 109.58507 * 65.14969 * 21 20 5 44 44 H 1.08996 * 109.58787 * 185.43736 * 21 20 5 45 45 H 0.96999 * 119.99821 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 3.5706 -0.8443 1.1674 6 1 4.0069 0.1521 1.0964 7 7 4.0711 -1.5115 2.3718 8 6 5.3349 -1.2944 2.7866 9 8 6.0598 -0.5453 2.1610 10 6 5.8397 -1.9676 4.0005 11 6 5.0070 -2.8365 4.7159 12 6 5.4612 -3.4592 5.8436 13 6 6.7582 -3.2414 6.2874 14 8 7.4745 -3.7007 7.3379 15 6 8.7008 -3.1536 7.2824 16 8 9.6914 -3.3837 8.1728 17 7 8.7966 -2.3668 6.2446 18 6 7.6091 -2.3783 5.5773 19 6 7.1461 -1.7434 4.4281 20 6 3.9603 -1.6607 -0.0670 21 6 3.4654 -0.9425 -1.3264 22 7 2.0225 -0.6981 -1.1953 23 6 1.1535 -1.1126 -2.1690 24 1 0.1403 -1.3819 -1.9094 25 6 1.5747 -1.1868 -3.4895 26 7 2.6839 -0.5835 -3.8614 27 14 0.5675 -2.1427 -4.7389 28 1 -0.6263 -2.7228 -4.0727 29 1 0.1321 -1.2300 -5.8264 30 1 1.3954 -3.2348 -5.3110 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5182 0.8874 33 1 -0.3633 0.5094 -0.8926 34 1 1.6080 -1.7257 1.2905 35 1 1.7689 -0.1672 2.1364 36 1 3.4929 -2.1095 2.8707 37 1 3.9968 -3.0118 4.3764 38 1 4.8093 -4.1234 6.3915 39 1 9.6982 -2.7708 8.9208 40 1 7.7932 -1.0785 3.8752 41 1 5.0447 -1.7624 -0.1085 42 1 3.5037 -2.6488 -0.0086 43 1 3.9886 0.0076 -1.4345 44 1 3.6547 -1.5654 -2.2005 45 1 2.9780 -0.6351 -4.7843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947416184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:31 Heat of formation + Delta-G solvation = -34.655566 kcal Electronic energy + Delta-G solvation = -29467.754874 eV Core-core repulsion = 25258.883700 eV Total energy + Delta-G solvation = -4208.871174 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.46367 -41.32119 -39.63695 -39.08001 -38.27697 -36.19994 -35.85596 -34.21273 -33.06656 -32.07549 -31.42075 -30.29276 -27.95169 -26.78902 -25.56748 -24.42422 -23.73984 -23.15106 -22.64564 -21.64565 -21.04293 -20.45613 -19.44793 -18.76642 -18.42499 -18.18159 -17.36228 -16.96573 -16.87784 -16.15790 -15.97046 -15.68918 -15.58381 -15.49209 -15.20674 -15.05229 -14.80299 -14.54879 -14.35715 -14.11695 -13.67965 -13.56542 -13.30108 -12.94757 -12.71114 -12.66233 -12.59550 -12.57331 -12.53957 -12.32829 -12.04036 -11.80931 -11.72849 -11.67256 -11.47427 -11.36050 -10.96020 -10.54136 -10.19313 -9.90548 -9.69967 -8.61141 -7.81264 -5.27866 -0.54553 -0.45525 0.73826 1.10658 1.48229 1.50429 1.60141 1.67652 1.94073 2.36265 2.54836 2.59960 3.21516 3.35009 3.53356 3.65168 3.75611 3.85144 3.87665 4.02056 4.08015 4.11045 4.31127 4.43753 4.54233 4.66086 4.74713 4.77642 4.79824 4.84729 4.86927 4.99695 5.00222 5.04761 5.12377 5.14677 5.20837 5.30837 5.42960 5.50966 5.57583 5.60383 5.75193 5.76594 6.16107 6.28524 6.46273 6.54677 7.19909 7.20145 7.92179 8.45089 9.26227 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026098 B = 0.002006 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.626671 B =13951.803592 C =14226.095108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.157 3.843 3 H 0.009 0.991 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.057 0.943 7 N -0.697 5.697 8 C 0.557 3.443 9 O -0.580 6.580 10 C -0.129 4.129 11 C -0.047 4.047 12 C -0.076 4.076 13 C 0.032 3.968 14 O -0.223 6.223 15 C 0.432 3.568 16 O -0.404 6.404 17 N -0.495 5.495 18 C 0.001 3.999 19 C -0.014 4.014 20 C -0.131 4.131 21 C 0.183 3.817 22 N -0.602 5.602 23 C -0.243 4.243 24 H 0.082 0.918 25 C -0.060 4.060 26 N -0.942 5.942 27 Si 0.963 3.037 28 H -0.259 1.259 29 H -0.298 1.298 30 H -0.296 1.296 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.417 0.583 37 H 0.186 0.814 38 H 0.185 0.815 39 H 0.448 0.552 40 H 0.132 0.868 41 H 0.043 0.957 42 H 0.066 0.934 43 H -0.015 1.015 44 H 0.052 0.948 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 -7.592 28.685 29.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.027 0.973 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.075 0.925 7 N -0.349 5.349 8 C 0.345 3.655 9 O -0.461 6.461 10 C -0.134 4.134 11 C -0.065 4.065 12 C -0.094 4.094 13 C -0.018 4.018 14 O -0.117 6.117 15 C 0.181 3.819 16 O -0.217 6.217 17 N -0.238 5.238 18 C -0.110 4.110 19 C -0.034 4.034 20 C -0.172 4.172 21 C 0.056 3.944 22 N -0.326 5.326 23 C -0.374 4.374 24 H 0.100 0.900 25 C -0.254 4.254 26 N -0.589 5.589 27 Si 0.792 3.208 28 H -0.183 1.183 29 H -0.226 1.226 30 H -0.223 1.223 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.256 0.744 37 H 0.203 0.797 38 H 0.202 0.798 39 H 0.314 0.686 40 H 0.150 0.850 41 H 0.061 0.939 42 H 0.085 0.915 43 H 0.003 0.997 44 H 0.071 0.929 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.449 -7.195 27.687 28.950 hybrid contribution -0.210 -0.247 -0.652 0.728 sum 4.238 -7.441 27.035 28.358 Atomic orbital electron populations 1.21709 0.93785 1.01807 1.01100 1.20667 0.94771 0.92885 0.86559 0.97327 1.22192 0.91995 1.02638 0.98845 1.20708 0.95223 0.95233 0.83119 0.92505 1.45848 1.12779 1.48204 1.28046 1.18397 0.82112 0.80844 0.84160 1.90810 1.57655 1.39275 1.58353 1.19685 0.94666 1.01984 0.97041 1.21267 1.00816 0.92297 0.92143 1.19987 0.90051 1.02258 0.97123 1.20606 0.95583 0.97484 0.88154 1.84497 1.23614 1.60341 1.43208 1.22553 0.80095 0.88221 0.90999 1.84904 1.38714 1.60101 1.37943 1.71067 1.23871 1.20809 1.08064 1.19505 0.90222 1.02268 0.98997 1.20316 0.94793 0.96301 0.91971 1.22320 0.99013 0.99822 0.96016 1.20424 0.83754 0.95361 0.94829 1.44434 1.02475 1.65657 1.20051 1.19581 0.95735 1.35653 0.86399 0.90050 1.25901 0.99199 1.01188 0.99158 1.70211 1.26291 1.45997 1.16395 0.85267 0.78611 0.77855 0.79107 1.18328 1.22583 1.22345 0.92406 0.90347 0.94385 0.89978 0.88824 0.74395 0.79701 0.79765 0.68626 0.84986 0.93862 0.91487 0.99693 0.92921 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 7.96 71.98 0.57 -3.55 16 2 C 0.16 5.96 3.49 44.98 0.16 6.11 16 3 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 4 C -0.12 -3.27 4.85 30.67 0.15 -3.12 16 5 C 0.16 5.13 2.42 45.02 0.11 5.24 16 6 H 0.06 2.16 7.58 -2.39 -0.02 2.14 16 7 N -0.70 -16.20 5.03 -445.42 -2.24 -18.44 16 8 C 0.56 15.41 7.73 86.75 0.67 16.08 16 9 O -0.58 -22.18 15.99 -3.94 -0.06 -22.24 16 10 C -0.13 -2.71 5.87 -20.10 -0.12 -2.82 16 11 C -0.05 -0.55 9.47 22.31 0.21 -0.34 16 12 C -0.08 -0.82 9.99 22.02 0.22 -0.60 16 13 C 0.03 0.57 7.42 22.95 0.17 0.74 16 14 O -0.22 -3.77 10.78 9.90 0.11 -3.67 16 15 C 0.43 7.43 9.53 130.43 1.24 8.68 16 16 O -0.40 -3.89 13.62 -62.24 -0.85 -4.74 16 17 N -0.49 -11.56 11.38 -422.85 -4.81 -16.37 16 18 C 0.00 0.03 7.22 39.24 0.28 0.31 16 19 C -0.01 -0.34 9.64 22.75 0.22 -0.12 16 20 C -0.13 -5.08 5.65 30.67 0.17 -4.91 16 21 C 0.18 9.07 5.28 86.36 0.46 9.52 16 22 N -0.60 -28.96 2.99 -675.23 -2.02 -30.98 16 23 C -0.24 -12.70 8.57 84.03 0.72 -11.98 16 24 H 0.08 4.01 6.24 -2.91 -0.02 3.99 16 25 C -0.06 -3.32 4.94 84.86 0.42 -2.91 16 26 N -0.94 -56.77 11.23 21.65 0.24 -56.53 16 27 Si 0.96 44.53 29.58 68.60 2.03 46.56 16 28 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 30 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 31 H 0.06 1.84 7.44 -2.38 -0.02 1.82 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.41 7.63 -2.39 -0.02 1.40 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.42 5.84 6.61 -92.71 -0.61 5.23 16 37 H 0.19 0.70 6.37 -2.91 -0.02 0.68 16 38 H 0.19 0.58 8.06 -2.91 -0.02 0.55 16 39 H 0.45 -1.41 9.06 -74.06 -0.67 -2.08 16 40 H 0.13 3.68 7.64 -2.91 -0.02 3.65 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 43 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 44 H 0.05 2.96 6.15 -2.39 -0.01 2.95 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -81.15 370.02 -2.16 -83.32 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -0.22 Total: 6.75 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 5.66 Total: 16.34 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -8.82 Total: -122.32 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.80 Total: -30.65 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -81.15 -2.16 -83.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947416184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.661 kcal (2) G-P(sol) polarization free energy of solvation -81.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds