Wall clock time and date at job start Sat Apr 11 2020 07:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.70245 * 2 1 4 4 C 1.53188 * 109.58661 * 239.64652 * 2 1 3 5 5 C 1.53038 * 109.31469 * 294.84958 * 4 2 1 6 6 H 1.09002 * 109.46261 * 58.63821 * 5 4 2 7 7 N 1.46496 * 109.46274 * 178.61642 * 5 4 2 8 8 C 1.34779 * 120.00174 * 205.00030 * 7 5 4 9 9 O 1.21688 * 119.99442 * 359.97438 * 8 7 5 10 10 C 1.46835 * 120.00247 * 179.97438 * 8 7 5 11 11 C 1.42390 * 128.41119 * 0.12300 * 10 8 7 12 12 N 1.29895 * 106.48178 * 180.28936 * 11 10 8 13 13 O 1.20724 * 112.92001 * 359.74357 * 12 11 10 14 14 C 1.34460 * 111.90800 * 359.97438 * 13 12 11 15 15 C 1.46426 * 127.24603 * 180.02562 * 14 13 12 16 16 C 1.36668 * 125.99437 * 0.30058 * 15 14 13 17 17 C 1.40440 * 106.70533 * 180.17524 * 16 15 14 18 18 C 1.35081 * 107.11512 * 359.61011 * 17 16 15 19 19 O 1.34080 * 108.78448 * 0.24326 * 18 17 16 20 20 C 1.53045 * 109.53523 * 298.63343 * 5 4 2 21 21 C 1.53191 * 109.31104 * 61.36546 * 20 5 4 22 22 N 1.46919 * 109.58673 * 120.35709 * 2 1 3 23 23 C 1.36937 * 120.63107 * 246.20245 * 22 2 1 24 24 H 1.08005 * 120.00112 * 331.81951 * 23 22 2 25 25 C 1.38812 * 120.00169 * 151.82400 * 23 22 2 26 26 N 1.31619 * 120.00075 * 343.06906 * 25 23 22 27 27 Si 1.86801 * 120.00230 * 163.06570 * 25 23 22 28 28 H 1.48500 * 109.46998 * 89.99704 * 27 25 23 29 29 H 1.48493 * 109.47387 * 210.00030 * 27 25 23 30 30 H 1.48500 * 109.47361 * 330.00231 * 27 25 23 31 31 H 1.08991 * 109.47329 * 180.35449 * 1 2 3 32 32 H 1.09002 * 109.47200 * 300.35385 * 1 2 3 33 33 H 1.08998 * 109.47172 * 60.35002 * 1 2 3 34 34 H 1.09000 * 109.49672 * 174.89499 * 4 2 1 35 35 H 1.09005 * 109.49570 * 54.80140 * 4 2 1 36 36 H 0.96997 * 120.00459 * 24.99576 * 7 5 4 37 37 H 1.08002 * 126.76225 * 0.04589 * 11 10 8 38 38 H 1.08006 * 126.65081 * 0.06526 * 16 15 14 39 39 H 1.08000 * 126.44358 * 179.87459 * 17 16 15 40 40 H 1.08004 * 125.60464 * 180.27433 * 18 17 16 41 41 H 1.08998 * 109.49989 * 181.31292 * 20 5 4 42 42 H 1.08997 * 109.49781 * 301.41343 * 20 5 4 43 43 H 1.08999 * 109.58858 * 185.57500 * 21 20 5 44 44 H 1.09003 * 109.70677 * 65.22448 * 21 20 5 45 45 H 0.97001 * 119.99940 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6414 -2.2040 -1.1702 6 1 0.5565 -2.2814 -1.0991 7 7 2.1023 -2.8977 -2.3755 8 6 1.4750 -4.0159 -2.7909 9 8 0.5261 -4.4495 -2.1646 10 6 1.9366 -4.7108 -3.9993 11 6 3.0184 -4.3669 -4.8589 12 7 3.0439 -5.2653 -5.7967 13 8 2.1817 -6.1009 -5.6709 14 6 1.4205 -5.8767 -4.5854 15 6 0.2872 -6.6771 -4.1172 16 6 -0.1951 -7.8103 -4.7096 17 6 -1.2821 -8.2412 -3.9317 18 6 -1.4085 -7.3694 -2.9077 19 8 -0.4609 -6.4278 -3.0228 20 6 2.2800 -2.8464 0.0634 21 6 1.7691 -2.1410 1.3236 22 7 2.0225 -0.6995 1.1944 23 6 2.7043 -0.0209 2.1689 24 1 3.2759 0.8596 1.9148 25 6 2.6611 -0.4646 3.4835 26 7 1.7269 -1.3110 3.8620 27 14 3.9287 0.1394 4.7155 28 1 3.4287 1.3717 5.3762 29 1 4.1638 -0.9105 5.7389 30 1 5.2013 0.4373 4.0105 31 1 -0.3633 -1.0275 0.0064 32 1 -0.3634 0.5193 0.8868 33 1 -0.3633 0.5084 -0.8931 34 1 3.1297 -0.6502 -1.2913 35 1 1.6075 -0.2783 -2.1368 36 1 2.8589 -2.5522 -2.8745 37 1 3.6840 -3.5228 -4.7542 38 1 0.1847 -8.2820 -5.6039 39 1 -1.8981 -9.1092 -4.1150 40 1 -2.1506 -7.4223 -2.1247 41 1 2.0123 -3.9022 0.1036 42 1 3.3639 -2.7474 0.0051 43 1 2.2944 -2.5275 2.1970 44 1 0.6989 -2.3155 1.4342 45 1 1.6964 -1.6208 4.7807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947454263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:42 Heat of formation + Delta-G solvation = 71.805737 kcal Electronic energy + Delta-G solvation = -30439.246172 eV Core-core repulsion = 26234.991506 eV Total energy + Delta-G solvation = -4204.254666 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.26468 -42.70782 -39.69344 -37.73212 -34.59098 -34.27589 -33.54398 -32.74480 -32.49968 -30.82890 -29.69573 -28.94481 -26.98295 -25.27618 -24.17813 -23.64850 -22.16621 -21.88991 -21.62328 -20.98414 -20.33830 -19.09238 -18.37317 -18.10689 -17.49545 -16.77757 -16.22660 -16.10169 -15.92009 -15.13596 -14.76890 -14.61717 -14.47458 -13.94457 -13.75346 -13.65446 -13.14512 -13.06154 -13.02869 -12.70345 -12.62238 -12.49218 -12.23028 -11.94795 -11.42285 -11.08362 -10.95365 -10.92762 -10.80038 -10.65747 -10.60743 -10.35971 -10.21328 -10.10892 -10.08702 -9.85115 -9.72876 -9.38334 -8.76860 -8.45365 -8.37043 -6.69107 -5.79305 -3.21988 0.12826 1.51956 1.75234 1.82852 2.39031 3.08384 3.28567 3.36788 3.44237 3.45873 3.52577 3.87872 3.98910 4.33478 4.48034 4.64739 4.65989 4.89758 4.96836 5.27064 5.36836 5.38898 5.43183 5.49855 5.52744 5.58720 5.68977 5.77459 6.00642 6.05729 6.11175 6.24911 6.28804 6.40525 6.45101 6.57263 6.64162 6.78361 6.81871 6.86519 6.93992 7.14820 7.37867 7.59974 7.69450 7.74383 7.79394 8.30933 8.45111 9.20754 9.84167 10.40872 11.28963 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.002663 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.816194 B =10513.393629 C =11194.430384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.152 3.848 6 H 0.088 0.912 7 N -0.715 5.715 8 C 0.584 3.416 9 O -0.511 6.511 10 C -0.233 4.233 11 C 0.032 3.968 12 N -0.356 5.356 13 O 0.120 5.880 14 C 0.109 3.891 15 C 0.022 3.978 16 C -0.149 4.149 17 C -0.229 4.229 18 C 0.001 3.999 19 O -0.108 6.108 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.585 5.585 23 C -0.254 4.254 24 H 0.065 0.935 25 C 0.004 3.996 26 N -0.900 5.900 27 Si 0.901 3.099 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.280 1.280 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.393 0.607 37 H 0.204 0.796 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.211 0.789 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.022 0.978 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -10.478 -18.675 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.106 0.894 7 N -0.365 5.365 8 C 0.368 3.632 9 O -0.387 6.387 10 C -0.240 4.240 11 C -0.147 4.147 12 N -0.060 5.060 13 O 0.057 5.943 14 C 0.043 3.957 15 C -0.030 4.030 16 C -0.169 4.169 17 C -0.248 4.248 18 C -0.070 4.070 19 O 0.000 6.000 20 C -0.187 4.187 21 C 0.048 3.952 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.083 0.917 25 C -0.195 4.195 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.205 1.205 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.227 0.773 37 H 0.220 0.780 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.228 0.772 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.040 0.960 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.608 -10.762 -18.888 21.895 hybrid contribution 0.670 0.552 1.004 1.327 sum -1.937 -10.209 -17.884 20.684 Atomic orbital electron populations 1.22302 0.98685 1.01165 1.00040 1.20431 0.91785 0.95093 0.86471 0.91624 1.22314 1.01210 0.94053 0.99700 1.21146 0.99948 0.91240 0.82729 0.89434 1.46119 1.34476 1.26593 1.29327 1.16687 0.83157 0.80860 0.82448 1.90902 1.26993 1.65070 1.55772 1.21742 1.01083 0.99195 1.01972 1.25019 0.98511 1.00105 0.91021 1.73511 1.07854 1.01913 1.22733 1.84924 1.31743 1.41136 1.36526 1.21030 0.92491 0.93525 0.88631 1.18000 0.95715 0.97312 0.91984 1.22016 0.97636 0.95450 1.01841 1.21780 1.01778 1.03645 0.97638 1.24617 0.93002 0.88537 1.00893 1.84538 1.34669 1.43793 1.37012 1.22577 1.00172 0.99211 0.96769 1.20732 0.97762 0.82878 0.93812 1.44164 1.63799 1.03442 1.19240 1.19140 1.21911 1.10609 0.86656 0.91719 1.25051 0.97666 0.99945 0.96823 1.70030 1.31737 1.35743 1.16853 0.86333 0.81583 0.77910 0.81141 1.21429 1.21606 1.20530 0.93167 0.92616 0.94513 0.91838 0.92540 0.77339 0.77967 0.82402 0.82642 0.77200 0.92858 0.92666 0.89355 0.96012 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.02 37.16 0.34 -2.72 16 2 C 0.17 3.35 3.29 -67.61 -0.22 3.13 16 3 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.13 5.02 -26.61 -0.13 -2.26 16 5 C 0.15 2.55 2.21 -67.89 -0.15 2.40 16 6 H 0.09 1.65 5.94 -51.93 -0.31 1.34 16 7 N -0.72 -9.82 5.07 -55.02 -0.28 -10.10 16 8 C 0.58 8.85 7.76 -12.78 -0.10 8.75 16 9 O -0.51 -9.44 13.57 -18.27 -0.25 -9.69 16 10 C -0.23 -2.97 6.37 -104.04 -0.66 -3.63 16 11 C 0.03 0.33 11.67 -16.77 -0.20 0.13 16 12 N -0.36 -4.05 11.97 30.86 0.37 -3.68 16 13 O 0.12 1.37 11.19 16.10 0.18 1.55 16 14 C 0.11 1.36 7.41 -35.50 -0.26 1.09 16 15 C 0.02 0.27 7.08 -36.85 -0.26 0.01 16 16 C -0.15 -1.43 10.86 -39.32 -0.43 -1.86 16 17 C -0.23 -1.94 10.88 -39.88 -0.43 -2.37 16 18 C 0.00 0.01 12.08 29.61 0.36 0.36 16 19 O -0.11 -1.49 7.67 -18.78 -0.14 -1.64 16 20 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 21 C 0.17 4.12 4.88 -3.71 -0.02 4.10 16 22 N -0.58 -14.00 2.70 -164.78 -0.44 -14.44 16 23 C -0.25 -6.74 9.58 -15.06 -0.14 -6.88 16 24 H 0.07 1.69 7.89 -52.48 -0.41 1.27 16 25 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 26 N -0.90 -25.75 11.20 55.49 0.62 -25.13 16 27 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 31 H 0.05 0.98 5.72 -51.93 -0.30 0.68 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.39 4.13 7.82 -40.82 -0.32 3.81 16 37 H 0.20 1.30 7.74 -52.49 -0.41 0.89 16 38 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.21 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 44 H 0.02 0.55 7.49 -51.93 -0.39 0.16 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -32.38 370.88 -7.74 -40.12 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.80 Total: 3.81 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.55 Total: -2.74 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.27 Total: -53.35 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: -0.21 Total: -9.78 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.38 -7.74 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947454263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.925 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds