Wall clock time and date at job start Sat Apr 11 2020 07:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.70245 * 2 1 4 4 C 1.53188 * 109.58661 * 239.64652 * 2 1 3 5 5 C 1.53038 * 109.31469 * 294.84958 * 4 2 1 6 6 H 1.09002 * 109.46261 * 58.63821 * 5 4 2 7 7 N 1.46496 * 109.46274 * 178.61642 * 5 4 2 8 8 C 1.34779 * 120.00174 * 205.00030 * 7 5 4 9 9 O 1.21688 * 119.99442 * 359.97438 * 8 7 5 10 10 C 1.46835 * 120.00247 * 179.97438 * 8 7 5 11 11 C 1.42390 * 128.41119 * 0.12300 * 10 8 7 12 12 N 1.29895 * 106.48178 * 180.28936 * 11 10 8 13 13 O 1.20724 * 112.92001 * 359.74357 * 12 11 10 14 14 C 1.34460 * 111.90800 * 359.97438 * 13 12 11 15 15 C 1.46426 * 127.24603 * 180.02562 * 14 13 12 16 16 C 1.36668 * 125.99437 * 0.30058 * 15 14 13 17 17 C 1.40440 * 106.70533 * 180.17524 * 16 15 14 18 18 C 1.35081 * 107.11512 * 359.61011 * 17 16 15 19 19 O 1.34080 * 108.78448 * 0.24326 * 18 17 16 20 20 C 1.53045 * 109.53523 * 298.63343 * 5 4 2 21 21 C 1.53191 * 109.31104 * 61.36546 * 20 5 4 22 22 N 1.46919 * 109.58673 * 120.35709 * 2 1 3 23 23 C 1.36937 * 120.63107 * 246.20245 * 22 2 1 24 24 H 1.08005 * 120.00112 * 331.81951 * 23 22 2 25 25 C 1.38812 * 120.00169 * 151.82400 * 23 22 2 26 26 N 1.31619 * 120.00075 * 343.06906 * 25 23 22 27 27 Si 1.86801 * 120.00230 * 163.06570 * 25 23 22 28 28 H 1.48500 * 109.46998 * 89.99704 * 27 25 23 29 29 H 1.48493 * 109.47387 * 210.00030 * 27 25 23 30 30 H 1.48500 * 109.47361 * 330.00231 * 27 25 23 31 31 H 1.08991 * 109.47329 * 180.35449 * 1 2 3 32 32 H 1.09002 * 109.47200 * 300.35385 * 1 2 3 33 33 H 1.08998 * 109.47172 * 60.35002 * 1 2 3 34 34 H 1.09000 * 109.49672 * 174.89499 * 4 2 1 35 35 H 1.09005 * 109.49570 * 54.80140 * 4 2 1 36 36 H 0.96997 * 120.00459 * 24.99576 * 7 5 4 37 37 H 1.08002 * 126.76225 * 0.04589 * 11 10 8 38 38 H 1.08006 * 126.65081 * 0.06526 * 16 15 14 39 39 H 1.08000 * 126.44358 * 179.87459 * 17 16 15 40 40 H 1.08004 * 125.60464 * 180.27433 * 18 17 16 41 41 H 1.08998 * 109.49989 * 181.31292 * 20 5 4 42 42 H 1.08997 * 109.49781 * 301.41343 * 20 5 4 43 43 H 1.08999 * 109.58858 * 185.57500 * 21 20 5 44 44 H 1.09003 * 109.70677 * 65.22448 * 21 20 5 45 45 H 0.97001 * 119.99940 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 1.6414 -2.2040 -1.1702 6 1 0.5565 -2.2814 -1.0991 7 7 2.1023 -2.8977 -2.3755 8 6 1.4750 -4.0159 -2.7909 9 8 0.5261 -4.4495 -2.1646 10 6 1.9366 -4.7108 -3.9993 11 6 3.0184 -4.3669 -4.8589 12 7 3.0439 -5.2653 -5.7967 13 8 2.1817 -6.1009 -5.6709 14 6 1.4205 -5.8767 -4.5854 15 6 0.2872 -6.6771 -4.1172 16 6 -0.1951 -7.8103 -4.7096 17 6 -1.2821 -8.2412 -3.9317 18 6 -1.4085 -7.3694 -2.9077 19 8 -0.4609 -6.4278 -3.0228 20 6 2.2800 -2.8464 0.0634 21 6 1.7691 -2.1410 1.3236 22 7 2.0225 -0.6995 1.1944 23 6 2.7043 -0.0209 2.1689 24 1 3.2759 0.8596 1.9148 25 6 2.6611 -0.4646 3.4835 26 7 1.7269 -1.3110 3.8620 27 14 3.9287 0.1394 4.7155 28 1 3.4287 1.3717 5.3762 29 1 4.1638 -0.9105 5.7389 30 1 5.2013 0.4373 4.0105 31 1 -0.3633 -1.0275 0.0064 32 1 -0.3634 0.5193 0.8868 33 1 -0.3633 0.5084 -0.8931 34 1 3.1297 -0.6502 -1.2913 35 1 1.6075 -0.2783 -2.1368 36 1 2.8589 -2.5522 -2.8745 37 1 3.6840 -3.5228 -4.7542 38 1 0.1847 -8.2820 -5.6039 39 1 -1.8981 -9.1092 -4.1150 40 1 -2.1506 -7.4223 -2.1247 41 1 2.0123 -3.9022 0.1036 42 1 3.3639 -2.7474 0.0051 43 1 2.2944 -2.5275 2.1970 44 1 0.6989 -2.3155 1.4342 45 1 1.6964 -1.6208 4.7807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947454263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:42 Heat of formation + Delta-G solvation = 52.215763 kcal Electronic energy + Delta-G solvation = -30440.095657 eV Core-core repulsion = 26234.991506 eV Total energy + Delta-G solvation = -4205.104151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.09753 -43.50698 -40.98069 -39.26354 -36.03896 -35.25225 -34.37767 -34.23585 -33.54140 -32.46204 -31.36169 -29.85089 -28.56360 -26.52522 -25.75080 -24.54405 -23.69466 -23.28367 -22.49109 -22.01220 -21.42755 -20.22813 -19.69367 -18.95386 -18.84275 -18.24511 -17.39918 -17.02973 -16.95558 -16.61987 -16.04866 -15.90363 -15.63108 -15.50047 -15.34456 -14.84716 -14.57511 -14.26975 -14.14864 -13.88904 -13.80807 -13.71182 -13.42707 -13.13727 -12.93446 -12.81412 -12.61498 -12.55596 -12.26716 -12.05665 -12.00085 -11.76893 -11.76047 -11.55269 -11.47784 -11.21303 -10.94900 -10.84984 -10.53995 -10.02110 -9.22654 -8.66388 -7.84447 -5.29308 -0.76112 0.68311 0.92246 1.01347 1.47533 1.49556 1.58509 1.64580 1.99620 2.19267 2.52970 2.71493 3.07096 3.16309 3.31753 3.44969 3.64053 3.83145 3.89375 3.98152 4.09309 4.13343 4.15265 4.30835 4.46590 4.53777 4.67469 4.72405 4.74904 4.77665 4.86497 4.89716 4.91394 4.97821 5.10425 5.14597 5.18424 5.35314 5.46256 5.46405 5.50250 5.58233 5.70080 5.78087 6.05911 6.42636 6.52383 6.88625 7.17599 7.20284 7.89702 8.41730 9.22108 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.002663 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.816194 B =10513.393629 C =11194.430384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.070 0.930 4 C -0.118 4.118 5 C 0.166 3.834 6 H 0.066 0.934 7 N -0.700 5.700 8 C 0.584 3.416 9 O -0.551 6.551 10 C -0.259 4.259 11 C 0.055 3.945 12 N -0.370 5.370 13 O 0.118 5.882 14 C 0.114 3.886 15 C -0.022 4.022 16 C -0.133 4.133 17 C -0.224 4.224 18 C -0.009 4.009 19 O -0.146 6.146 20 C -0.132 4.132 21 C 0.186 3.814 22 N -0.599 5.599 23 C -0.257 4.257 24 H 0.072 0.928 25 C -0.052 4.052 26 N -0.935 5.935 27 Si 0.964 3.036 28 H -0.286 1.286 29 H -0.298 1.298 30 H -0.268 1.268 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.241 0.759 38 H 0.183 0.817 39 H 0.189 0.811 40 H 0.236 0.764 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.051 0.949 44 H -0.008 1.008 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 -10.294 -21.378 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.089 0.911 4 C -0.158 4.158 5 C 0.061 3.939 6 H 0.085 0.915 7 N -0.352 5.352 8 C 0.370 3.630 9 O -0.429 6.429 10 C -0.266 4.266 11 C -0.124 4.124 12 N -0.076 5.076 13 O 0.058 5.942 14 C 0.048 3.952 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.242 4.242 18 C -0.080 4.080 19 O -0.039 6.039 20 C -0.172 4.172 21 C 0.060 3.940 22 N -0.322 5.322 23 C -0.387 4.387 24 H 0.089 0.911 25 C -0.247 4.247 26 N -0.582 5.582 27 Si 0.792 3.208 28 H -0.213 1.213 29 H -0.224 1.224 30 H -0.193 1.193 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.250 0.750 37 H 0.257 0.743 38 H 0.201 0.799 39 H 0.206 0.794 40 H 0.252 0.748 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.010 0.990 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.601 -10.572 -21.663 24.158 hybrid contribution 0.248 0.421 1.805 1.870 sum -1.353 -10.151 -19.859 22.343 Atomic orbital electron populations 1.22187 0.98235 1.00311 1.00532 1.20704 0.92156 0.95515 0.86255 0.91136 1.22146 1.02052 0.92628 0.98936 1.20742 0.98470 0.91980 0.82665 0.91544 1.45771 1.34975 1.26133 1.28290 1.16972 0.82515 0.80710 0.82759 1.90891 1.28802 1.66083 1.57164 1.21519 1.02971 1.00053 1.02096 1.25507 0.97469 1.00224 0.89240 1.73497 1.08231 1.02467 1.23414 1.84931 1.31781 1.41340 1.36130 1.21272 0.92197 0.93272 0.88479 1.18349 0.96923 0.99049 0.92956 1.22459 0.96953 0.93990 1.01927 1.22194 1.01428 1.04056 0.96540 1.25361 0.92614 0.88012 1.01968 1.84506 1.35902 1.45492 1.38049 1.22326 1.00319 0.98241 0.96318 1.20392 0.95476 0.83649 0.94520 1.44374 1.64140 1.03580 1.20077 1.19521 1.21543 1.10390 0.87280 0.91055 1.25797 0.99467 1.00754 0.98715 1.70200 1.33653 1.37593 1.16718 0.85332 0.79728 0.76941 0.78772 1.21293 1.22419 1.19278 0.94654 0.95328 0.90736 0.90591 0.88922 0.74960 0.74278 0.79938 0.79417 0.74769 0.93899 0.92130 0.93042 0.99043 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 9.02 71.98 0.65 -5.05 16 2 C 0.16 6.12 3.29 44.97 0.15 6.26 16 3 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 4 C -0.12 -3.45 5.02 30.67 0.15 -3.29 16 5 C 0.17 5.38 2.21 45.02 0.10 5.47 16 6 H 0.07 2.51 5.94 -2.39 -0.01 2.49 16 7 N -0.70 -17.88 5.07 -446.21 -2.26 -20.15 16 8 C 0.58 17.36 7.76 86.49 0.67 18.03 16 9 O -0.55 -20.84 13.57 18.13 0.25 -20.59 16 10 C -0.26 -6.33 6.37 -19.48 -0.12 -6.45 16 11 C 0.05 0.97 11.67 86.01 1.00 1.98 16 12 N -0.37 -7.68 11.97 -56.72 -0.68 -8.36 16 13 O 0.12 2.55 11.19 67.83 0.76 3.30 16 14 C 0.11 2.77 7.41 24.91 0.18 2.96 16 15 C -0.02 -0.55 7.08 24.04 0.17 -0.38 16 16 C -0.13 -2.36 10.86 22.44 0.24 -2.11 16 17 C -0.22 -3.34 10.88 22.08 0.24 -3.10 16 18 C -0.01 -0.18 12.08 67.09 0.81 0.63 16 19 O -0.15 -4.11 7.67 16.31 0.13 -3.99 16 20 C -0.13 -5.19 5.65 30.67 0.17 -5.02 16 21 C 0.19 9.17 4.88 86.36 0.42 9.59 16 22 N -0.60 -29.01 2.70 -675.25 -1.82 -30.83 16 23 C -0.26 -13.75 9.58 84.03 0.81 -12.95 16 24 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 25 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 26 N -0.94 -55.83 11.20 21.65 0.24 -55.59 16 27 Si 0.96 44.66 29.59 68.60 2.03 46.69 16 28 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 29 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 30 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 31 H 0.03 1.40 5.72 -2.39 -0.01 1.38 16 32 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.41 7.24 7.82 -92.71 -0.73 6.51 16 37 H 0.24 2.06 7.74 -2.91 -0.02 2.04 16 38 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 39 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.05 2.90 6.06 -2.39 -0.01 2.88 16 44 H -0.01 -0.46 7.49 -2.39 -0.02 -0.48 16 45 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -74.67 370.88 5.02 -69.65 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.31 Total: 15.74 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 6.07 Total: 4.11 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -4.52 Total: -114.92 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 1.13 Total: -21.28 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.67 5.02 -69.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947454263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.864 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds