Wall clock time and date at job start Sat Apr 11 2020 07:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70020 * 2 1 4 4 C 1.53195 * 109.58836 * 239.64533 * 2 1 3 5 5 C 1.53034 * 109.31240 * 185.57616 * 4 2 1 6 6 H 1.09005 * 109.46224 * 301.34338 * 5 4 2 7 7 N 1.46499 * 109.45884 * 181.37230 * 5 4 2 8 8 C 1.34781 * 120.00110 * 155.00293 * 7 5 4 9 9 O 1.21690 * 119.99826 * 359.97438 * 8 7 5 10 10 C 1.46838 * 120.00238 * 179.97438 * 8 7 5 11 11 C 1.42395 * 128.41063 * 0.02562 * 10 8 7 12 12 N 1.29891 * 106.48454 * 179.97438 * 11 10 8 13 13 O 1.20736 * 112.91646 * 0.02562 * 12 11 10 14 14 C 1.34454 * 111.90388 * 359.70864 * 13 12 11 15 15 C 1.46435 * 127.24139 * 180.29970 * 14 13 12 16 16 C 1.36672 * 125.99154 * 0.17620 * 15 14 13 17 17 C 1.40444 * 106.69790 * 179.97438 * 16 15 14 18 18 C 1.35070 * 107.12501 * 0.02562 * 17 16 15 19 19 O 1.34091 * 108.77796 * 359.76749 * 18 17 16 20 20 C 1.53040 * 109.54033 * 61.36724 * 5 4 2 21 21 C 1.53632 * 109.23932 * 298.50895 * 20 5 4 22 22 N 1.46922 * 109.58672 * 120.35553 * 2 1 3 23 23 C 1.36942 * 120.63203 * 353.37275 * 22 2 1 24 24 H 1.08000 * 119.99568 * 29.87336 * 23 22 2 25 25 C 1.38812 * 120.00159 * 209.87633 * 23 22 2 26 26 N 1.31618 * 119.99880 * 15.66343 * 25 23 22 27 27 Si 1.86799 * 119.99899 * 195.66440 * 25 23 22 28 28 H 1.48500 * 109.47195 * 270.00080 * 27 25 23 29 29 H 1.48496 * 109.46929 * 29.99997 * 27 25 23 30 30 H 1.48503 * 109.46956 * 149.99881 * 27 25 23 31 31 H 1.08998 * 109.47534 * 299.64408 * 1 2 3 32 32 H 1.09007 * 109.47382 * 59.64536 * 1 2 3 33 33 H 1.09001 * 109.47100 * 179.64063 * 1 2 3 34 34 H 1.09004 * 109.49544 * 305.52894 * 4 2 1 35 35 H 1.09002 * 109.49524 * 65.62744 * 4 2 1 36 36 H 0.96997 * 120.00117 * 335.00063 * 7 5 4 37 37 H 1.07999 * 126.75520 * 359.97438 * 11 10 8 38 38 H 1.08000 * 126.65185 * 359.96526 * 16 15 14 39 39 H 1.07997 * 126.43471 * 180.02562 * 17 16 15 40 40 H 1.08000 * 125.61074 * 180.02562 * 18 17 16 41 41 H 1.09003 * 109.50002 * 58.58306 * 20 5 4 42 42 H 1.08992 * 109.50238 * 178.68516 * 20 5 4 43 43 H 1.08991 * 109.73950 * 295.11909 * 21 20 5 44 44 H 1.08999 * 109.66483 * 174.54359 * 21 20 5 45 45 H 0.97000 * 120.00044 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5674 -0.8479 -1.1701 6 1 4.0061 0.1475 -1.0993 7 7 4.0651 -1.5159 -2.3752 8 6 5.3294 -1.3025 -2.7907 9 8 6.0573 -0.5544 -2.1650 10 6 5.8285 -1.9724 -3.9983 11 6 5.1394 -2.8738 -4.8587 12 7 5.9790 -3.2068 -5.7922 13 8 7.0569 -2.6780 -5.6654 14 6 7.0982 -1.8753 -4.5877 15 6 8.2310 -1.0711 -4.1245 16 6 9.4588 -0.9951 -4.7200 17 6 10.2294 -0.1134 -3.9446 18 6 9.4497 0.3040 -2.9238 19 8 8.2441 -0.2718 -3.0382 20 6 3.9569 -1.6657 0.0634 21 6 3.4656 -0.9419 1.3264 22 7 2.0225 -0.6995 1.1944 23 6 1.1537 -1.1127 2.1690 24 1 0.1398 -1.3801 1.9104 25 6 1.5761 -1.1877 3.4891 26 7 2.6850 -0.5837 3.8605 27 14 0.5708 -2.1458 4.7385 28 1 -0.4257 -1.2432 5.3689 29 1 -0.1332 -3.2613 4.0565 30 1 1.4724 -2.6945 5.7832 31 1 -0.3634 0.5083 0.8931 32 1 -0.3634 0.5194 -0.8868 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6030 -1.7253 -1.2913 35 1 1.7660 -0.1668 -2.1368 36 1 3.4848 -2.1119 -2.8741 37 1 4.1194 -3.2135 -4.7555 38 1 9.7751 -1.5127 -5.6135 39 1 11.2532 0.1764 -4.1299 40 1 9.7468 0.9917 -2.1459 41 1 3.4983 -2.6528 0.0052 42 1 5.0411 -1.7695 0.1037 43 1 3.9876 0.0090 1.4323 44 1 3.6531 -1.5636 2.2018 45 1 2.9800 -0.6358 4.7831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947454266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:50 Heat of formation + Delta-G solvation = 71.881528 kcal Electronic energy + Delta-G solvation = -30283.506963 eV Core-core repulsion = 26079.255584 eV Total energy + Delta-G solvation = -4204.251379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.26452 -42.70771 -39.65461 -37.63555 -34.65723 -34.31222 -33.54398 -32.74418 -32.40178 -31.29858 -29.66906 -28.93996 -26.43618 -25.47060 -24.42992 -23.66319 -22.17154 -21.78635 -21.42342 -20.67528 -20.13997 -19.39494 -18.84093 -18.10757 -17.52785 -16.41112 -16.21241 -16.10147 -15.82928 -15.17032 -15.05202 -14.62990 -14.44170 -13.96594 -13.80467 -13.57034 -13.28040 -13.11978 -13.03067 -12.82296 -12.72151 -12.63175 -11.95853 -11.61131 -11.23585 -11.11088 -10.97683 -10.92328 -10.89837 -10.67427 -10.62271 -10.33632 -10.17250 -10.10506 -10.06500 -9.94964 -9.74675 -9.40521 -8.76457 -8.45719 -8.38001 -6.64185 -5.77845 -3.21836 0.12730 1.51787 1.75132 1.82820 2.38978 3.07784 3.28332 3.36915 3.44408 3.45720 3.52386 3.87608 3.98752 4.33296 4.48729 4.64689 4.65952 4.89682 4.96873 5.25673 5.35199 5.40400 5.43735 5.49810 5.52722 5.57285 5.68925 5.75762 5.97909 6.11148 6.14241 6.22487 6.30420 6.38716 6.41464 6.49529 6.62432 6.78012 6.81833 6.86577 7.01920 7.08787 7.36965 7.59652 7.68368 7.74110 7.82290 8.30571 8.46813 9.21980 9.85590 10.42895 11.30855 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.002625 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.477962 B =10664.462511 C =11545.039418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.153 3.847 6 H 0.084 0.916 7 N -0.715 5.715 8 C 0.584 3.416 9 O -0.511 6.511 10 C -0.233 4.233 11 C 0.033 3.967 12 N -0.356 5.356 13 O 0.120 5.880 14 C 0.109 3.891 15 C 0.021 3.979 16 C -0.149 4.149 17 C -0.229 4.229 18 C 0.001 3.999 19 O -0.108 6.108 20 C -0.147 4.147 21 C 0.176 3.824 22 N -0.588 5.588 23 C -0.252 4.252 24 H 0.069 0.931 25 C 0.003 3.997 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.287 1.287 29 H -0.280 1.280 30 H -0.290 1.290 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.393 0.607 37 H 0.203 0.797 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.212 0.788 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.088 0.912 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.263 -1.266 -18.696 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.051 3.949 6 H 0.102 0.898 7 N -0.365 5.365 8 C 0.369 3.631 9 O -0.387 6.387 10 C -0.240 4.240 11 C -0.146 4.146 12 N -0.060 5.060 13 O 0.057 5.943 14 C 0.043 3.957 15 C -0.030 4.030 16 C -0.169 4.169 17 C -0.248 4.248 18 C -0.070 4.070 19 O 0.000 6.000 20 C -0.187 4.187 21 C 0.050 3.950 22 N -0.311 5.311 23 C -0.381 4.381 24 H 0.087 0.913 25 C -0.196 4.196 26 N -0.546 5.546 27 Si 0.729 3.271 28 H -0.214 1.214 29 H -0.205 1.205 30 H -0.216 1.216 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.227 0.773 37 H 0.220 0.780 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.228 0.772 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.107 0.893 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.479 -1.483 -18.919 21.679 hybrid contribution -0.734 -0.468 1.003 1.328 sum 9.745 -1.951 -17.916 20.488 Atomic orbital electron populations 1.21791 0.95746 1.01376 1.00375 1.20351 0.93076 0.93551 0.86632 0.95547 1.22392 0.93553 1.01700 0.99761 1.21084 0.94281 0.96767 0.82800 0.89828 1.46113 1.12411 1.48650 1.29322 1.16690 0.82540 0.81461 0.82454 1.90904 1.55774 1.36262 1.55781 1.21740 0.94127 1.06254 1.01882 1.25019 1.01762 0.96885 0.90980 1.73515 0.92361 1.17436 1.22697 1.84927 1.28446 1.43886 1.37075 1.21029 0.92495 0.93423 0.88710 1.18003 0.92513 1.00299 0.92204 1.22018 0.91992 1.01156 1.01771 1.21779 1.02149 1.03275 0.97639 1.24617 0.82426 0.99104 1.00889 1.84539 1.32453 1.45437 1.37600 1.22655 0.99783 0.99566 0.96733 1.20824 0.83203 0.97227 0.93767 1.44188 1.02942 1.64935 1.19030 1.19144 0.95202 1.37719 0.86086 0.91297 1.25105 0.97898 0.99542 0.97012 1.70019 1.24182 1.43682 1.16698 0.86349 0.79394 0.80002 0.81317 1.21436 1.20537 1.21631 0.91822 0.94317 0.92788 0.91759 0.92642 0.77314 0.77972 0.82398 0.82639 0.77195 0.92636 0.92854 0.96076 0.89347 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.95 37.16 0.30 -2.14 16 2 C 0.17 3.40 3.49 -67.60 -0.24 3.17 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.15 2.59 2.41 -67.89 -0.16 2.43 16 6 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 7 N -0.71 -9.84 5.07 -55.02 -0.28 -10.12 16 8 C 0.58 8.87 7.76 -12.78 -0.10 8.77 16 9 O -0.51 -9.47 13.57 -18.27 -0.25 -9.71 16 10 C -0.23 -2.97 6.37 -104.04 -0.66 -3.63 16 11 C 0.03 0.33 11.67 -16.77 -0.20 0.14 16 12 N -0.36 -4.05 11.97 30.86 0.37 -3.68 16 13 O 0.12 1.37 11.19 16.11 0.18 1.55 16 14 C 0.11 1.36 7.41 -35.50 -0.26 1.10 16 15 C 0.02 0.27 7.08 -36.85 -0.26 0.01 16 16 C -0.15 -1.43 10.86 -39.32 -0.43 -1.86 16 17 C -0.23 -1.94 10.87 -39.88 -0.43 -2.38 16 18 C 0.00 0.01 12.08 29.61 0.36 0.37 16 19 O -0.11 -1.50 7.67 -18.79 -0.14 -1.64 16 20 C -0.15 -2.86 5.67 -26.38 -0.15 -3.01 16 21 C 0.18 4.18 5.31 -3.48 -0.02 4.16 16 22 N -0.59 -14.12 2.98 -164.51 -0.49 -14.61 16 23 C -0.25 -6.61 8.57 -15.06 -0.13 -6.74 16 24 H 0.07 1.76 6.24 -52.49 -0.33 1.43 16 25 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 26 N -0.90 -25.89 11.22 55.49 0.62 -25.27 16 27 Si 0.90 21.35 29.58 -169.99 -5.03 16.33 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 32 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.39 4.15 7.82 -40.82 -0.32 3.83 16 37 H 0.20 1.30 7.74 -52.49 -0.41 0.90 16 38 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.21 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 2.36 6.13 -51.93 -0.32 2.04 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -32.44 371.92 -7.92 -40.36 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.91 Total: 3.11 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -2.60 Total: -1.92 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.22 Total: -53.68 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.21 Total: -9.81 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.44 -7.92 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947454266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.245 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds