Wall clock time and date at job start Sat Apr 11 2020 07:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70020 * 2 1 4 4 C 1.53195 * 109.58836 * 239.64533 * 2 1 3 5 5 C 1.53034 * 109.31240 * 185.57616 * 4 2 1 6 6 H 1.09005 * 109.46224 * 301.34338 * 5 4 2 7 7 N 1.46499 * 109.45884 * 181.37230 * 5 4 2 8 8 C 1.34781 * 120.00110 * 155.00293 * 7 5 4 9 9 O 1.21690 * 119.99826 * 359.97438 * 8 7 5 10 10 C 1.46838 * 120.00238 * 179.97438 * 8 7 5 11 11 C 1.42395 * 128.41063 * 0.02562 * 10 8 7 12 12 N 1.29891 * 106.48454 * 179.97438 * 11 10 8 13 13 O 1.20736 * 112.91646 * 0.02562 * 12 11 10 14 14 C 1.34454 * 111.90388 * 359.70864 * 13 12 11 15 15 C 1.46435 * 127.24139 * 180.29970 * 14 13 12 16 16 C 1.36672 * 125.99154 * 0.17620 * 15 14 13 17 17 C 1.40444 * 106.69790 * 179.97438 * 16 15 14 18 18 C 1.35070 * 107.12501 * 0.02562 * 17 16 15 19 19 O 1.34091 * 108.77796 * 359.76749 * 18 17 16 20 20 C 1.53040 * 109.54033 * 61.36724 * 5 4 2 21 21 C 1.53632 * 109.23932 * 298.50895 * 20 5 4 22 22 N 1.46922 * 109.58672 * 120.35553 * 2 1 3 23 23 C 1.36942 * 120.63203 * 353.37275 * 22 2 1 24 24 H 1.08000 * 119.99568 * 29.87336 * 23 22 2 25 25 C 1.38812 * 120.00159 * 209.87633 * 23 22 2 26 26 N 1.31618 * 119.99880 * 15.66343 * 25 23 22 27 27 Si 1.86799 * 119.99899 * 195.66440 * 25 23 22 28 28 H 1.48500 * 109.47195 * 270.00080 * 27 25 23 29 29 H 1.48496 * 109.46929 * 29.99997 * 27 25 23 30 30 H 1.48503 * 109.46956 * 149.99881 * 27 25 23 31 31 H 1.08998 * 109.47534 * 299.64408 * 1 2 3 32 32 H 1.09007 * 109.47382 * 59.64536 * 1 2 3 33 33 H 1.09001 * 109.47100 * 179.64063 * 1 2 3 34 34 H 1.09004 * 109.49544 * 305.52894 * 4 2 1 35 35 H 1.09002 * 109.49524 * 65.62744 * 4 2 1 36 36 H 0.96997 * 120.00117 * 335.00063 * 7 5 4 37 37 H 1.07999 * 126.75520 * 359.97438 * 11 10 8 38 38 H 1.08000 * 126.65185 * 359.96526 * 16 15 14 39 39 H 1.07997 * 126.43471 * 180.02562 * 17 16 15 40 40 H 1.08000 * 125.61074 * 180.02562 * 18 17 16 41 41 H 1.09003 * 109.50002 * 58.58306 * 20 5 4 42 42 H 1.08992 * 109.50238 * 178.68516 * 20 5 4 43 43 H 1.08991 * 109.73950 * 295.11909 * 21 20 5 44 44 H 1.08999 * 109.66483 * 174.54359 * 21 20 5 45 45 H 0.97000 * 120.00044 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5674 -0.8479 -1.1701 6 1 4.0061 0.1475 -1.0993 7 7 4.0651 -1.5159 -2.3752 8 6 5.3294 -1.3025 -2.7907 9 8 6.0573 -0.5544 -2.1650 10 6 5.8285 -1.9724 -3.9983 11 6 5.1394 -2.8738 -4.8587 12 7 5.9790 -3.2068 -5.7922 13 8 7.0569 -2.6780 -5.6654 14 6 7.0982 -1.8753 -4.5877 15 6 8.2310 -1.0711 -4.1245 16 6 9.4588 -0.9951 -4.7200 17 6 10.2294 -0.1134 -3.9446 18 6 9.4497 0.3040 -2.9238 19 8 8.2441 -0.2718 -3.0382 20 6 3.9569 -1.6657 0.0634 21 6 3.4656 -0.9419 1.3264 22 7 2.0225 -0.6995 1.1944 23 6 1.1537 -1.1127 2.1690 24 1 0.1398 -1.3801 1.9104 25 6 1.5761 -1.1877 3.4891 26 7 2.6850 -0.5837 3.8605 27 14 0.5708 -2.1458 4.7385 28 1 -0.4257 -1.2432 5.3689 29 1 -0.1332 -3.2613 4.0565 30 1 1.4724 -2.6945 5.7832 31 1 -0.3634 0.5083 0.8931 32 1 -0.3634 0.5194 -0.8868 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6030 -1.7253 -1.2913 35 1 1.7660 -0.1668 -2.1368 36 1 3.4848 -2.1119 -2.8741 37 1 4.1194 -3.2135 -4.7555 38 1 9.7751 -1.5127 -5.6135 39 1 11.2532 0.1764 -4.1299 40 1 9.7468 0.9917 -2.1459 41 1 3.4983 -2.6528 0.0052 42 1 5.0411 -1.7695 0.1037 43 1 3.9876 0.0090 1.4323 44 1 3.6531 -1.5636 2.2018 45 1 2.9800 -0.6358 4.7831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947454266.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:50 Heat of formation + Delta-G solvation = 52.050303 kcal Electronic energy + Delta-G solvation = -30284.366909 eV Core-core repulsion = 26079.255584 eV Total energy + Delta-G solvation = -4205.111326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.10014 -43.51094 -40.93948 -39.19822 -36.12212 -35.25825 -34.38105 -34.17377 -33.54615 -32.89260 -31.31775 -29.83701 -28.00614 -26.91919 -25.81724 -24.53863 -23.70356 -22.85364 -22.38788 -21.79384 -21.45992 -20.87477 -19.79774 -18.95572 -18.62429 -18.13679 -17.31240 -17.03329 -16.96017 -16.80585 -16.05544 -15.93219 -15.71384 -15.52265 -15.28352 -14.97196 -14.63746 -14.51621 -14.30217 -13.82209 -13.71825 -13.43378 -13.32192 -12.95943 -12.82005 -12.69740 -12.68846 -12.58651 -12.33927 -12.10327 -11.84513 -11.77382 -11.70736 -11.56038 -11.48800 -11.35844 -10.98958 -10.85422 -10.53892 -10.04585 -9.23200 -8.62643 -7.82693 -5.28983 -0.76647 0.67809 0.91750 1.00879 1.47742 1.49658 1.58391 1.64191 1.97820 2.18262 2.53813 2.70907 3.06422 3.15827 3.34065 3.44308 3.61354 3.85324 3.89083 3.97816 4.07688 4.10931 4.14843 4.28452 4.41171 4.62847 4.67096 4.72485 4.75320 4.76749 4.83933 4.89414 4.97164 4.97372 5.09207 5.11035 5.17673 5.40487 5.45974 5.48491 5.55348 5.57454 5.72740 5.74753 6.05528 6.44780 6.51181 6.88100 7.18675 7.19111 7.90571 8.43554 9.24689 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.002625 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.477962 B =10664.462511 C =11545.039418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.011 0.989 4 C -0.118 4.118 5 C 0.166 3.834 6 H 0.059 0.941 7 N -0.699 5.699 8 C 0.584 3.416 9 O -0.551 6.551 10 C -0.259 4.259 11 C 0.055 3.945 12 N -0.370 5.370 13 O 0.118 5.882 14 C 0.114 3.886 15 C -0.022 4.022 16 C -0.133 4.133 17 C -0.224 4.224 18 C -0.009 4.009 19 O -0.146 6.146 20 C -0.130 4.130 21 C 0.185 3.815 22 N -0.603 5.603 23 C -0.248 4.248 24 H 0.080 0.920 25 C -0.056 4.056 26 N -0.940 5.940 27 Si 0.962 3.038 28 H -0.286 1.286 29 H -0.267 1.267 30 H -0.299 1.299 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.414 0.586 37 H 0.241 0.759 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.236 0.764 41 H 0.062 0.938 42 H 0.043 0.957 43 H -0.012 1.012 44 H 0.053 0.947 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.527 -2.358 -21.472 23.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.028 0.972 4 C -0.157 4.157 5 C 0.062 3.938 6 H 0.077 0.923 7 N -0.351 5.351 8 C 0.370 3.630 9 O -0.430 6.430 10 C -0.267 4.267 11 C -0.124 4.124 12 N -0.076 5.076 13 O 0.058 5.942 14 C 0.048 3.952 15 C -0.073 4.073 16 C -0.153 4.153 17 C -0.242 4.242 18 C -0.080 4.080 19 O -0.040 6.040 20 C -0.170 4.170 21 C 0.058 3.942 22 N -0.327 5.327 23 C -0.378 4.378 24 H 0.098 0.902 25 C -0.251 4.251 26 N -0.587 5.587 27 Si 0.791 3.209 28 H -0.213 1.213 29 H -0.191 1.191 30 H -0.226 1.226 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.251 0.749 37 H 0.258 0.742 38 H 0.201 0.799 39 H 0.206 0.794 40 H 0.252 0.748 41 H 0.081 0.919 42 H 0.061 0.939 43 H 0.006 0.994 44 H 0.072 0.928 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.726 -2.599 -21.768 23.983 hybrid contribution -0.384 -0.027 1.819 1.859 sum 9.342 -2.626 -19.950 22.184 Atomic orbital electron populations 1.21709 0.93868 1.01740 1.01110 1.20638 0.94704 0.92864 0.86488 0.97163 1.22195 0.92195 1.02442 0.98892 1.20678 0.95054 0.95195 0.82875 0.92303 1.45748 1.12432 1.48651 1.28247 1.16983 0.82343 0.80854 0.82778 1.90893 1.56830 1.38068 1.57200 1.21510 0.95045 1.08116 1.01997 1.25508 1.02768 0.94947 0.89177 1.73500 0.92590 1.18122 1.23376 1.84934 1.28703 1.43858 1.36678 1.21269 0.92621 0.92745 0.88545 1.18356 0.93807 1.01945 0.93201 1.22462 0.90868 1.00119 1.01845 1.22194 1.03264 1.02214 0.96530 1.25361 0.81629 0.99019 1.01956 1.84507 1.34370 1.46469 1.38650 1.22383 0.98953 0.99602 0.96083 1.20515 0.83650 0.95375 0.94655 1.44446 1.02558 1.65649 1.20016 1.19533 0.95694 1.36115 0.86497 0.90245 1.25868 0.99145 1.01060 0.99038 1.70195 1.26192 1.45820 1.16500 0.85351 0.77777 0.78908 0.78883 1.21315 1.19146 1.22576 0.94239 0.90444 0.92533 0.90335 0.89117 0.74890 0.74250 0.79910 0.79400 0.74774 0.91920 0.93855 0.99367 0.92846 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.95 71.98 0.57 -3.69 16 2 C 0.16 6.17 3.49 44.97 0.16 6.33 16 3 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 4 C -0.12 -3.48 4.84 30.67 0.15 -3.33 16 5 C 0.17 5.49 2.41 45.02 0.11 5.59 16 6 H 0.06 2.28 7.58 -2.38 -0.02 2.26 16 7 N -0.70 -18.00 5.07 -446.21 -2.26 -20.26 16 8 C 0.58 17.49 7.76 86.49 0.67 18.16 16 9 O -0.55 -21.06 13.57 18.13 0.25 -20.81 16 10 C -0.26 -6.36 6.37 -19.49 -0.12 -6.48 16 11 C 0.06 0.98 11.67 86.01 1.00 1.99 16 12 N -0.37 -7.67 11.97 -56.72 -0.68 -8.35 16 13 O 0.12 2.55 11.19 67.88 0.76 3.31 16 14 C 0.11 2.79 7.41 24.91 0.18 2.98 16 15 C -0.02 -0.56 7.08 24.04 0.17 -0.39 16 16 C -0.13 -2.36 10.86 22.44 0.24 -2.11 16 17 C -0.22 -3.36 10.87 22.08 0.24 -3.12 16 18 C -0.01 -0.18 12.08 67.09 0.81 0.63 16 19 O -0.15 -4.15 7.67 16.27 0.12 -4.03 16 20 C -0.13 -5.14 5.67 30.82 0.17 -4.96 16 21 C 0.18 9.20 5.31 86.51 0.46 9.66 16 22 N -0.60 -29.37 2.98 -674.39 -2.01 -31.38 16 23 C -0.25 -13.10 8.57 84.03 0.72 -12.38 16 24 H 0.08 3.97 6.24 -2.91 -0.02 3.95 16 25 C -0.06 -3.13 4.94 84.86 0.42 -2.71 16 26 N -0.94 -56.45 11.22 21.65 0.24 -56.21 16 27 Si 0.96 44.63 29.58 68.60 2.03 46.66 16 28 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 30 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 31 H 0.04 1.50 7.63 -2.39 -0.02 1.48 16 32 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.06 1.87 7.44 -2.39 -0.02 1.85 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.41 7.28 7.82 -92.71 -0.73 6.56 16 37 H 0.24 2.06 7.74 -2.91 -0.02 2.03 16 38 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.24 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 43 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 44 H 0.05 3.01 6.13 -2.39 -0.01 3.00 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -75.20 371.92 4.72 -70.48 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.31 Total: 14.43 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 5.96 Total: 6.16 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -4.71 Total: -116.20 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 1.13 Total: -21.53 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.20 4.72 -70.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947454266.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.532 kcal (2) G-P(sol) polarization free energy of solvation -75.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds