Wall clock time and date at job start Sat Apr 11 2020 07:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70576 * 2 1 4 4 C 1.53197 * 109.58604 * 239.64341 * 2 1 3 5 5 C 1.53045 * 109.31369 * 185.57672 * 4 2 1 6 6 H 1.08993 * 109.46079 * 301.36364 * 5 4 2 7 7 N 1.46497 * 109.45836 * 181.38500 * 5 4 2 8 8 C 1.34781 * 119.99641 * 155.00171 * 7 5 4 9 9 O 1.21617 * 120.00078 * 0.02562 * 8 7 5 10 10 C 1.47324 * 119.99760 * 179.97438 * 8 7 5 11 11 C 1.39494 * 120.30894 * 359.97438 * 10 8 7 12 12 C 1.38049 * 120.21717 * 180.02562 * 11 10 8 13 13 C 1.38370 * 120.67935 * 0.02562 * 12 11 10 14 14 C 1.38392 * 120.24624 * 359.97438 * 13 12 11 15 15 O 1.35326 * 133.76123 * 180.31625 * 14 13 12 16 16 C 1.34317 * 108.10695 * 180.09120 * 15 14 13 17 17 O 1.35099 * 124.95734 * 179.89349 * 16 15 14 18 18 N 1.30849 * 110.08272 * 359.62460 * 16 15 14 19 19 C 1.35538 * 108.78175 * 0.23001 * 18 16 15 20 20 C 1.53048 * 109.53401 * 61.36560 * 5 4 2 21 21 C 1.53185 * 109.31290 * 298.63583 * 20 5 4 22 22 N 1.46924 * 109.58804 * 120.35590 * 2 1 3 23 23 C 1.36939 * 120.63014 * 353.41476 * 22 2 1 24 24 H 1.08006 * 119.99628 * 29.04393 * 23 22 2 25 25 C 1.38809 * 120.00419 * 209.04346 * 23 22 2 26 26 N 1.31616 * 119.99540 * 15.04566 * 25 23 22 27 27 Si 1.86799 * 120.00342 * 195.04661 * 25 23 22 28 28 H 1.48503 * 109.46921 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47368 * 119.99884 * 27 25 23 30 30 H 1.48498 * 109.46891 * 240.00233 * 27 25 23 31 31 H 1.08999 * 109.47190 * 180.35241 * 1 2 3 32 32 H 1.08999 * 109.47151 * 300.36029 * 1 2 3 33 33 H 1.09000 * 109.46978 * 60.35481 * 1 2 3 34 34 H 1.09007 * 109.49823 * 65.62674 * 4 2 1 35 35 H 1.08996 * 109.49873 * 305.53237 * 4 2 1 36 36 H 0.96997 * 120.00621 * 335.00286 * 7 5 4 37 37 H 1.08002 * 119.89292 * 0.04673 * 11 10 8 38 38 H 1.08000 * 119.66058 * 180.02562 * 12 11 10 39 39 H 1.08004 * 119.87242 * 179.97438 * 13 12 11 40 40 H 0.96705 * 114.00437 * 269.69659 * 17 16 15 41 41 H 1.09001 * 109.49670 * 58.58515 * 20 5 4 42 42 H 1.08992 * 109.49305 * 178.68463 * 20 5 4 43 43 H 1.09004 * 109.58648 * 294.84492 * 21 20 5 44 44 H 1.08998 * 109.70683 * 174.49248 * 21 20 5 45 45 H 0.97007 * 119.99820 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1702 6 1 4.0061 0.1472 -1.0991 7 7 4.0651 -1.5158 -2.3754 8 6 5.3294 -1.3022 -2.7908 9 8 6.0572 -0.5555 -2.1649 10 6 5.8300 -1.9742 -4.0025 11 6 5.0013 -2.8332 -4.7245 12 6 5.4725 -3.4623 -5.8593 13 6 6.7685 -3.2523 -6.2965 14 6 7.6109 -2.4049 -5.5983 15 8 8.8917 -2.0048 -5.7741 16 6 9.2064 -1.1621 -4.7767 17 8 10.4061 -0.5608 -4.6208 18 7 8.1796 -1.0041 -3.9812 19 6 7.1505 -1.7559 -4.4423 20 6 3.9569 -1.6658 0.0635 21 6 3.4650 -0.9470 1.3237 22 7 2.0225 -0.6995 1.1944 23 6 1.1536 -1.1134 2.1686 24 1 0.1361 -1.3686 1.9116 25 6 1.5805 -1.2051 3.4862 26 7 2.7030 -0.6257 3.8560 27 14 0.5621 -2.1506 4.7344 28 1 -0.6461 -2.7031 4.0708 29 1 1.3721 -3.2623 5.2940 30 1 0.1502 -1.2376 5.8307 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8932 34 1 1.7660 -0.1669 -2.1369 35 1 1.6029 -1.7253 -1.2914 36 1 3.4848 -2.1117 -2.8745 37 1 3.9876 -3.0064 -4.3947 38 1 4.8230 -4.1253 -6.4117 39 1 7.1237 -3.7515 -7.1859 40 1 11.0322 -1.0652 -4.0834 41 1 3.4982 -2.6529 0.0053 42 1 5.0411 -1.7696 0.1037 43 1 3.9904 0.0019 1.4317 44 1 3.6519 -1.5697 2.1986 45 1 3.0012 -0.6894 4.7769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947540480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:54 Heat of formation + Delta-G solvation = -0.937381 kcal Electronic energy + Delta-G solvation = -29978.868377 eV Core-core repulsion = 25771.459333 eV Total energy + Delta-G solvation = -4207.409044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.61925 -39.96709 -38.61365 -37.89136 -37.26821 -35.06280 -34.45798 -32.48977 -31.85440 -30.76279 -29.73916 -29.27549 -26.36453 -25.06677 -24.36237 -23.39819 -23.13007 -21.91096 -20.96141 -20.12561 -19.74871 -19.30649 -18.39711 -17.88628 -17.47342 -16.54595 -16.25132 -15.70473 -15.51101 -15.05385 -14.82884 -14.62241 -14.45727 -14.01189 -13.86770 -13.59992 -13.30715 -13.12013 -12.90705 -12.74892 -12.45120 -12.42692 -12.14770 -11.70220 -11.57931 -11.19576 -11.07584 -10.89853 -10.87589 -10.78754 -10.63742 -10.27572 -10.10079 -10.01098 -9.76848 -9.69942 -9.32540 -9.28067 -8.84296 -8.63343 -8.38659 -6.61443 -5.74035 -3.18136 -0.05444 0.66749 1.50628 1.97623 2.71341 3.08544 3.21835 3.38906 3.46353 3.48065 3.60028 4.11358 4.31010 4.51153 4.51270 4.60848 4.70488 4.89939 5.20173 5.28556 5.38600 5.43131 5.48172 5.59772 5.62425 5.71702 5.77595 5.80490 6.03393 6.08287 6.18232 6.27993 6.33506 6.44546 6.46100 6.54226 6.66512 6.67771 6.84304 6.93093 7.05583 7.12290 7.21068 7.42750 7.70564 7.75866 7.85230 8.42638 8.50036 9.25430 9.89183 10.46161 11.34470 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.002397 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.425134 B =11680.886079 C =12341.234556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.152 3.848 6 H 0.083 0.917 7 N -0.720 5.720 8 C 0.546 3.454 9 O -0.505 6.505 10 C -0.069 4.069 11 C -0.082 4.082 12 C -0.099 4.099 13 C -0.068 4.068 14 C 0.008 3.992 15 O -0.227 6.227 16 C 0.416 3.584 17 O -0.406 6.406 18 N -0.432 5.432 19 C 0.081 3.919 20 C -0.146 4.146 21 C 0.174 3.826 22 N -0.588 5.588 23 C -0.250 4.250 24 H 0.071 0.929 25 C 0.001 3.999 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.392 0.608 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.422 0.578 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.091 0.909 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.077 -7.329 -22.762 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.049 3.951 6 H 0.101 0.899 7 N -0.371 5.371 8 C 0.331 3.669 9 O -0.380 6.380 10 C -0.074 4.074 11 C -0.102 4.102 12 C -0.117 4.117 13 C -0.087 4.087 14 C -0.042 4.042 15 O -0.121 6.121 16 C 0.166 3.834 17 O -0.214 6.214 18 N -0.174 5.174 19 C -0.034 4.034 20 C -0.187 4.187 21 C 0.048 3.952 22 N -0.311 5.311 23 C -0.379 4.379 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.227 0.773 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.283 0.717 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.109 0.891 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.530 -5.913 -21.934 24.266 hybrid contribution -0.052 -1.467 0.097 1.471 sum 8.479 -7.380 -21.837 24.560 Atomic orbital electron populations 1.21790 0.95770 1.01413 1.00291 1.20358 0.93038 0.93619 0.86644 0.95525 1.22385 0.93627 1.01628 0.99715 1.21068 0.94216 0.96840 0.82994 0.89924 1.46242 1.12752 1.48805 1.29330 1.17897 0.82506 0.82304 0.84145 1.90889 1.55686 1.35670 1.55707 1.19430 0.90846 0.99765 0.97333 1.21360 0.99722 0.94713 0.94447 1.20967 0.94156 0.99968 0.96575 1.20034 0.91863 0.96891 0.99927 1.19945 0.83155 1.02060 0.99031 1.84499 1.27632 1.52408 1.47549 1.22775 0.89398 0.87734 0.83464 1.84891 1.19719 1.42466 1.74292 1.71272 0.98757 1.22382 1.24957 1.19294 0.94083 0.96258 0.93768 1.22568 0.99811 0.99528 0.96755 1.20762 0.83151 0.97384 0.93921 1.44183 1.03022 1.64884 1.19048 1.19215 0.94825 1.37636 0.86253 0.91176 1.25101 0.97822 0.99806 0.96990 1.70029 1.23339 1.44543 1.16738 0.86260 0.79615 0.79539 0.81569 1.20315 1.21677 1.21804 0.92757 0.91899 0.94311 0.92650 0.91787 0.77345 0.83788 0.83268 0.84074 0.71733 0.92683 0.92847 0.96172 0.89127 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.94 37.16 0.30 -2.16 16 2 C 0.17 3.46 3.50 -67.60 -0.24 3.23 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.15 2.67 2.42 -67.88 -0.16 2.51 16 6 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 7 N -0.72 -10.28 5.03 -54.87 -0.28 -10.56 16 8 C 0.55 8.89 7.72 -12.56 -0.10 8.79 16 9 O -0.50 -10.55 15.73 5.26 0.08 -10.47 16 10 C -0.07 -0.90 5.90 -104.74 -0.62 -1.52 16 11 C -0.08 -0.69 9.53 -39.18 -0.37 -1.06 16 12 C -0.10 -0.61 10.01 -39.60 -0.40 -1.01 16 13 C -0.07 -0.51 10.04 -39.48 -0.40 -0.90 16 14 C 0.01 0.09 7.41 -38.74 -0.29 -0.20 16 15 O -0.23 -2.54 10.79 -20.53 -0.22 -2.76 16 16 C 0.42 4.94 9.54 52.34 0.50 5.44 16 17 O -0.41 -3.40 13.62 -40.30 -0.55 -3.95 16 18 N -0.43 -6.70 10.65 -12.57 -0.13 -6.83 16 19 C 0.08 1.14 6.83 -84.44 -0.58 0.56 16 20 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 21 C 0.17 4.25 5.29 -3.71 -0.02 4.23 16 22 N -0.59 -14.38 2.99 -164.78 -0.49 -14.87 16 23 C -0.25 -6.62 8.61 -15.06 -0.13 -6.75 16 24 H 0.07 1.80 6.20 -52.48 -0.33 1.48 16 25 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 26 N -0.90 -26.28 11.14 55.49 0.62 -25.66 16 27 Si 0.90 21.54 29.58 -169.99 -5.03 16.52 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 31 H 0.05 0.98 7.40 -51.93 -0.38 0.60 16 32 H 0.06 1.24 7.66 -51.93 -0.40 0.85 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.39 4.15 6.63 -40.82 -0.27 3.88 16 37 H 0.14 0.81 6.40 -52.49 -0.34 0.48 16 38 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 39 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 40 H 0.42 0.94 9.06 45.56 0.41 1.35 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -36.64 369.43 -8.25 -44.88 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -4.95 Total: 2.45 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -2.87 Total: 5.67 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.28 Total: -57.92 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.69 Total: -17.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.64 -8.25 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947540480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.946 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds