Wall clock time and date at job start Sat Apr 11 2020 07:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70576 * 2 1 4 4 C 1.53197 * 109.58604 * 239.64341 * 2 1 3 5 5 C 1.53045 * 109.31369 * 185.57672 * 4 2 1 6 6 H 1.08993 * 109.46079 * 301.36364 * 5 4 2 7 7 N 1.46497 * 109.45836 * 181.38500 * 5 4 2 8 8 C 1.34781 * 119.99641 * 155.00171 * 7 5 4 9 9 O 1.21617 * 120.00078 * 0.02562 * 8 7 5 10 10 C 1.47324 * 119.99760 * 179.97438 * 8 7 5 11 11 C 1.39494 * 120.30894 * 359.97438 * 10 8 7 12 12 C 1.38049 * 120.21717 * 180.02562 * 11 10 8 13 13 C 1.38370 * 120.67935 * 0.02562 * 12 11 10 14 14 C 1.38392 * 120.24624 * 359.97438 * 13 12 11 15 15 O 1.35326 * 133.76123 * 180.31625 * 14 13 12 16 16 C 1.34317 * 108.10695 * 180.09120 * 15 14 13 17 17 O 1.35099 * 124.95734 * 179.89349 * 16 15 14 18 18 N 1.30849 * 110.08272 * 359.62460 * 16 15 14 19 19 C 1.35538 * 108.78175 * 0.23001 * 18 16 15 20 20 C 1.53048 * 109.53401 * 61.36560 * 5 4 2 21 21 C 1.53185 * 109.31290 * 298.63583 * 20 5 4 22 22 N 1.46924 * 109.58804 * 120.35590 * 2 1 3 23 23 C 1.36939 * 120.63014 * 353.41476 * 22 2 1 24 24 H 1.08006 * 119.99628 * 29.04393 * 23 22 2 25 25 C 1.38809 * 120.00419 * 209.04346 * 23 22 2 26 26 N 1.31616 * 119.99540 * 15.04566 * 25 23 22 27 27 Si 1.86799 * 120.00342 * 195.04661 * 25 23 22 28 28 H 1.48503 * 109.46921 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47368 * 119.99884 * 27 25 23 30 30 H 1.48498 * 109.46891 * 240.00233 * 27 25 23 31 31 H 1.08999 * 109.47190 * 180.35241 * 1 2 3 32 32 H 1.08999 * 109.47151 * 300.36029 * 1 2 3 33 33 H 1.09000 * 109.46978 * 60.35481 * 1 2 3 34 34 H 1.09007 * 109.49823 * 65.62674 * 4 2 1 35 35 H 1.08996 * 109.49873 * 305.53237 * 4 2 1 36 36 H 0.96997 * 120.00621 * 335.00286 * 7 5 4 37 37 H 1.08002 * 119.89292 * 0.04673 * 11 10 8 38 38 H 1.08000 * 119.66058 * 180.02562 * 12 11 10 39 39 H 1.08004 * 119.87242 * 179.97438 * 13 12 11 40 40 H 0.96705 * 114.00437 * 269.69659 * 17 16 15 41 41 H 1.09001 * 109.49670 * 58.58515 * 20 5 4 42 42 H 1.08992 * 109.49305 * 178.68463 * 20 5 4 43 43 H 1.09004 * 109.58648 * 294.84492 * 21 20 5 44 44 H 1.08998 * 109.70683 * 174.49248 * 21 20 5 45 45 H 0.97007 * 119.99820 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5675 -0.8480 -1.1702 6 1 4.0061 0.1472 -1.0991 7 7 4.0651 -1.5158 -2.3754 8 6 5.3294 -1.3022 -2.7908 9 8 6.0572 -0.5555 -2.1649 10 6 5.8300 -1.9742 -4.0025 11 6 5.0013 -2.8332 -4.7245 12 6 5.4725 -3.4623 -5.8593 13 6 6.7685 -3.2523 -6.2965 14 6 7.6109 -2.4049 -5.5983 15 8 8.8917 -2.0048 -5.7741 16 6 9.2064 -1.1621 -4.7767 17 8 10.4061 -0.5608 -4.6208 18 7 8.1796 -1.0041 -3.9812 19 6 7.1505 -1.7559 -4.4423 20 6 3.9569 -1.6658 0.0635 21 6 3.4650 -0.9470 1.3237 22 7 2.0225 -0.6995 1.1944 23 6 1.1536 -1.1134 2.1686 24 1 0.1361 -1.3686 1.9116 25 6 1.5805 -1.2051 3.4862 26 7 2.7030 -0.6257 3.8560 27 14 0.5621 -2.1506 4.7344 28 1 -0.6461 -2.7031 4.0708 29 1 1.3721 -3.2623 5.2940 30 1 0.1502 -1.2376 5.8307 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8932 34 1 1.7660 -0.1669 -2.1369 35 1 1.6029 -1.7253 -1.2914 36 1 3.4848 -2.1117 -2.8745 37 1 3.9876 -3.0064 -4.3947 38 1 4.8230 -4.1253 -6.4117 39 1 7.1237 -3.7515 -7.1859 40 1 11.0322 -1.0652 -4.0834 41 1 3.4982 -2.6529 0.0053 42 1 5.0411 -1.7696 0.1037 43 1 3.9904 0.0019 1.4317 44 1 3.6519 -1.5697 2.1986 45 1 3.0012 -0.6894 4.7769 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947540480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:53 Heat of formation + Delta-G solvation = -32.169817 kcal Electronic energy + Delta-G solvation = -29980.222717 eV Core-core repulsion = 25771.459333 eV Total energy + Delta-G solvation = -4208.763384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.42276 -41.17122 -39.59012 -39.06614 -38.27816 -36.22074 -35.70533 -34.24907 -33.22462 -32.13565 -30.84406 -30.46658 -27.96201 -26.75518 -25.35503 -24.40860 -23.98891 -23.54358 -22.32005 -21.47247 -20.89650 -20.48572 -19.26391 -18.86499 -18.34485 -18.16743 -17.43097 -17.16355 -16.64213 -16.25602 -15.93666 -15.70907 -15.54084 -15.51204 -15.30799 -14.97827 -14.82479 -14.53164 -14.33507 -13.85559 -13.43510 -13.31708 -13.09204 -12.95475 -12.88099 -12.71817 -12.65064 -12.58391 -12.48808 -12.34486 -12.03936 -11.83617 -11.71796 -11.67581 -11.49124 -11.29850 -10.82258 -10.55332 -10.12407 -9.92503 -9.54603 -8.64131 -7.81808 -5.28790 -0.82222 -0.02700 0.76547 1.16218 1.48120 1.49679 1.60014 1.77254 2.05797 2.36584 2.54181 2.67501 3.29836 3.35525 3.60361 3.66916 3.74703 3.87248 3.97941 4.07240 4.08373 4.27004 4.30558 4.40679 4.58217 4.63412 4.67715 4.74078 4.77466 4.84733 4.92559 4.98391 5.09393 5.11278 5.12745 5.16747 5.18856 5.39897 5.48891 5.53928 5.57061 5.58279 5.72729 5.74844 6.14150 6.38733 6.44561 6.59853 7.18215 7.27608 7.90277 8.43564 9.25828 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.002397 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.425134 B =11680.886079 C =12341.234556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.007 0.993 4 C -0.116 4.116 5 C 0.163 3.837 6 H 0.049 0.951 7 N -0.701 5.701 8 C 0.544 3.456 9 O -0.567 6.567 10 C -0.110 4.110 11 C -0.060 4.060 12 C -0.082 4.082 13 C -0.051 4.051 14 C -0.008 4.008 15 O -0.224 6.224 16 C 0.423 3.577 17 O -0.406 6.406 18 N -0.494 5.494 19 C 0.045 3.955 20 C -0.129 4.129 21 C 0.183 3.817 22 N -0.602 5.602 23 C -0.245 4.245 24 H 0.084 0.916 25 C -0.061 4.061 26 N -0.944 5.944 27 Si 0.965 3.035 28 H -0.258 1.258 29 H -0.296 1.296 30 H -0.298 1.298 31 H 0.058 0.942 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.415 0.585 37 H 0.177 0.823 38 H 0.203 0.797 39 H 0.179 0.821 40 H 0.445 0.555 41 H 0.067 0.933 42 H 0.037 0.963 43 H -0.018 1.018 44 H 0.056 0.944 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.594 -10.305 -26.943 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.024 0.976 4 C -0.155 4.155 5 C 0.058 3.942 6 H 0.068 0.932 7 N -0.354 5.354 8 C 0.332 3.668 9 O -0.446 6.446 10 C -0.115 4.115 11 C -0.079 4.079 12 C -0.099 4.099 13 C -0.070 4.070 14 C -0.058 4.058 15 O -0.119 6.119 16 C 0.174 3.826 17 O -0.219 6.219 18 N -0.237 5.237 19 C -0.069 4.069 20 C -0.169 4.169 21 C 0.057 3.943 22 N -0.326 5.326 23 C -0.375 4.375 24 H 0.102 0.898 25 C -0.255 4.255 26 N -0.591 5.591 27 Si 0.794 3.206 28 H -0.182 1.182 29 H -0.223 1.223 30 H -0.225 1.225 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.254 0.746 37 H 0.194 0.806 38 H 0.219 0.781 39 H 0.197 0.803 40 H 0.311 0.689 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.000 1.000 44 H 0.075 0.925 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.012 -8.936 -26.178 28.307 hybrid contribution 0.770 -0.524 1.282 1.584 sum 6.782 -9.461 -24.896 27.483 Atomic orbital electron populations 1.21704 0.93562 1.01900 1.01154 1.20664 0.94905 0.92750 0.86544 0.97551 1.22187 0.91834 1.02652 0.98846 1.20663 0.95291 0.94944 0.83269 0.93247 1.45856 1.12701 1.48694 1.28111 1.18513 0.82174 0.81372 0.84715 1.90855 1.57289 1.38550 1.57924 1.19308 0.91683 1.02931 0.97545 1.21817 1.00173 0.92039 0.93880 1.21596 0.93964 0.99010 0.95333 1.20705 0.91589 0.94656 1.00011 1.20460 0.83240 1.03095 0.98969 1.84489 1.28017 1.52203 1.47161 1.22773 0.89732 0.87078 0.83051 1.84852 1.19109 1.43019 1.74899 1.71176 1.00495 1.24692 1.27333 1.19647 0.94501 0.97343 0.95411 1.22294 0.98676 0.99826 0.96132 1.20435 0.83777 0.95277 0.94846 1.44442 1.02496 1.65558 1.20134 1.19632 0.95377 1.35935 0.86571 0.89830 1.25914 0.99105 1.01345 0.99137 1.70221 1.25491 1.46790 1.16581 0.85224 0.78626 0.77754 0.78995 1.18227 1.22276 1.22527 0.92260 0.94283 0.90329 0.89024 0.89838 0.74598 0.80607 0.78052 0.80335 0.68890 0.91429 0.94413 1.00030 0.92525 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.94 71.98 0.57 -3.68 16 2 C 0.16 6.27 3.50 44.98 0.16 6.43 16 3 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 4 C -0.12 -3.51 4.84 30.67 0.15 -3.36 16 5 C 0.16 5.74 2.42 45.02 0.11 5.84 16 6 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 7 N -0.70 -19.06 5.03 -445.76 -2.24 -21.30 16 8 C 0.54 18.03 7.72 86.63 0.67 18.70 16 9 O -0.57 -25.49 15.73 -4.09 -0.06 -25.55 16 10 C -0.11 -2.78 5.90 -19.94 -0.12 -2.90 16 11 C -0.06 -0.74 9.53 22.53 0.21 -0.53 16 12 C -0.08 -0.52 10.01 22.26 0.22 -0.30 16 13 C -0.05 -0.53 10.04 22.34 0.22 -0.30 16 14 C -0.01 -0.16 7.41 22.82 0.17 0.01 16 15 O -0.22 -4.92 10.79 9.25 0.10 -4.82 16 16 C 0.42 10.45 9.54 130.39 1.24 11.69 16 17 O -0.41 -7.04 13.62 -61.47 -0.84 -7.88 16 18 N -0.49 -16.31 10.65 -421.88 -4.49 -20.80 16 19 C 0.05 1.29 6.83 39.73 0.27 1.56 16 20 C -0.13 -5.37 5.65 30.67 0.17 -5.20 16 21 C 0.18 9.50 5.29 86.36 0.46 9.96 16 22 N -0.60 -30.03 2.99 -675.24 -2.02 -32.05 16 23 C -0.24 -13.06 8.61 84.03 0.72 -12.34 16 24 H 0.08 4.18 6.20 -2.91 -0.02 4.16 16 25 C -0.06 -3.42 4.96 84.86 0.42 -3.00 16 26 N -0.94 -57.87 11.14 21.65 0.24 -57.63 16 27 Si 0.97 45.06 29.58 68.60 2.03 47.09 16 28 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 30 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 31 H 0.06 1.95 7.40 -2.39 -0.02 1.93 16 32 H 0.04 1.49 7.66 -2.39 -0.02 1.47 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.42 7.21 6.63 -92.71 -0.61 6.59 16 37 H 0.18 0.93 6.40 -2.91 -0.02 0.91 16 38 H 0.20 -0.67 8.06 -2.91 -0.02 -0.70 16 39 H 0.18 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.45 2.11 9.06 -74.05 -0.67 1.44 16 41 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 43 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 44 H 0.06 3.30 6.06 -2.39 -0.01 3.28 16 45 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -90.07 369.43 -1.85 -91.92 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -0.22 Total: 8.45 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 5.66 Total: 22.59 kcal Atomic # 7 Polarization: -123.28 SS G_CDS: -8.51 Total: -131.79 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.80 Total: -38.25 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -90.07 -1.85 -91.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947540480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.749 kcal (2) G-P(sol) polarization free energy of solvation -90.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds