Wall clock time and date at job start Sat Apr 11 2020 07:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 109.58064 * 2 1 4 4 C 1.53194 * 109.70309 * 239.64536 * 2 1 3 5 5 C 1.53038 * 109.30763 * 185.50671 * 4 2 1 6 6 H 1.09003 * 109.44660 * 181.37568 * 5 4 2 7 7 N 1.46493 * 109.46377 * 301.34095 * 5 4 2 8 8 C 1.34774 * 120.00332 * 205.07103 * 7 5 4 9 9 O 1.21493 * 119.99703 * 359.72392 * 8 7 5 10 10 C 1.48350 * 120.00177 * 179.72775 * 8 7 5 11 11 C 1.41712 * 126.80856 * 179.70902 * 10 8 7 12 12 C 1.37156 * 103.79440 * 179.89024 * 11 10 8 13 13 C 1.47011 * 126.86370 * 180.09724 * 12 11 10 14 14 C 1.36335 * 125.97074 * 180.30606 * 13 12 11 15 15 C 1.40698 * 106.72310 * 179.97438 * 14 13 12 16 16 C 1.34892 * 107.08078 * 359.97438 * 15 14 13 17 17 O 1.34229 * 108.73023 * 359.77314 * 16 15 14 18 18 O 1.34584 * 106.28251 * 0.36709 * 12 11 10 19 19 N 1.20878 * 111.69004 * 359.75303 * 18 12 11 20 20 C 1.53036 * 109.53856 * 61.36676 * 5 4 2 21 21 C 1.53194 * 109.31398 * 298.63033 * 20 5 4 22 22 N 1.46928 * 109.58229 * 120.27997 * 2 1 3 23 23 C 1.36932 * 120.63364 * 353.56528 * 22 2 1 24 24 H 1.07997 * 120.00212 * 28.99694 * 23 22 2 25 25 C 1.38816 * 119.99864 * 208.99538 * 23 22 2 26 26 N 1.31627 * 119.99750 * 15.03159 * 25 23 22 27 27 Si 1.86796 * 120.00032 * 195.02565 * 25 23 22 28 28 H 1.48494 * 109.47012 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46725 * 120.00373 * 27 25 23 30 30 H 1.48493 * 109.47183 * 240.00090 * 27 25 23 31 31 H 1.08997 * 109.46908 * 299.71518 * 1 2 3 32 32 H 1.09002 * 109.46865 * 59.71390 * 1 2 3 33 33 H 1.08998 * 109.46624 * 179.71716 * 1 2 3 34 34 H 1.08999 * 109.49605 * 65.55191 * 4 2 1 35 35 H 1.08995 * 109.49450 * 305.45835 * 4 2 1 36 36 H 0.97001 * 119.99873 * 24.79794 * 7 5 4 37 37 H 1.08003 * 128.10882 * 0.02562 * 11 10 8 38 38 H 1.08002 * 126.63808 * 359.91980 * 14 13 12 39 39 H 1.08001 * 126.46136 * 180.02562 * 15 14 13 40 40 H 1.08000 * 125.63144 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.50316 * 58.58547 * 20 5 4 42 42 H 1.09002 * 109.49872 * 178.67752 * 20 5 4 43 43 H 1.08998 * 109.58573 * 174.42298 * 21 20 5 44 44 H 1.09001 * 109.58495 * 294.70651 * 21 20 5 45 45 H 0.96992 * 119.99577 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7288 -1.2445 5 6 3.5707 -0.8442 -1.1673 6 1 3.9429 -1.3409 -2.0634 7 7 4.1574 0.4947 -1.0720 8 6 5.4210 0.7080 -1.4892 9 8 6.0753 -0.2113 -1.9397 10 6 6.0131 2.0652 -1.3983 11 6 7.3208 2.4488 -1.7867 12 6 7.3659 3.7901 -1.5036 13 6 8.5023 4.6984 -1.7149 14 6 8.5291 6.0294 -1.4209 15 6 9.8051 6.4985 -1.7832 16 6 10.4896 5.4452 -2.2748 17 8 9.7021 4.3592 -2.2271 18 8 6.1639 4.1075 -0.9880 19 7 5.4318 3.1469 -0.9372 20 6 3.9602 -1.6607 0.0670 21 6 3.4654 -0.9424 1.3265 22 7 2.0225 -0.6980 1.1954 23 6 1.1533 -1.1133 2.1686 24 1 0.1365 -1.3700 1.9107 25 6 1.5791 -1.2044 3.4867 26 7 2.7006 -0.6235 3.8576 27 14 0.5606 -2.1511 4.7339 28 1 -0.6456 -2.7060 4.0690 29 1 1.3716 -3.2617 5.2944 30 1 0.1466 -1.2386 5.8298 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3632 -1.0277 -0.0051 34 1 1.7689 -0.1672 -2.1365 35 1 1.6081 -1.7256 -1.2905 36 1 3.6350 1.2286 -0.7124 37 1 8.0991 1.8304 -2.2090 38 1 7.7258 6.6113 -0.9936 39 1 10.1684 7.5108 -1.6854 40 1 11.5047 5.4707 -2.6426 41 1 3.5038 -2.6488 0.0087 42 1 5.0447 -1.7624 0.1086 43 1 3.6524 -1.5665 2.2003 44 1 3.9905 0.0065 1.4360 45 1 2.9983 -0.6875 4.7785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947595547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:07 Heat of formation + Delta-G solvation = 73.079626 kcal Electronic energy + Delta-G solvation = -29966.718198 eV Core-core repulsion = 25762.518772 eV Total energy + Delta-G solvation = -4204.199426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.24478 -42.95488 -39.82220 -37.71802 -34.42081 -34.26200 -33.72502 -32.97717 -32.32781 -31.18993 -29.67174 -29.09348 -26.46846 -25.36200 -24.66288 -23.67544 -22.53612 -21.96469 -21.74284 -20.70326 -20.28277 -19.02744 -18.67530 -18.06762 -16.96979 -16.91910 -16.41602 -16.40356 -15.46336 -15.24356 -15.10084 -14.77130 -14.26059 -13.99631 -13.89792 -13.72343 -13.36459 -13.18472 -13.16289 -12.89225 -12.79954 -12.49917 -11.95795 -11.80692 -11.45236 -11.23157 -11.02878 -10.86428 -10.70091 -10.66660 -10.63564 -10.41202 -10.30053 -10.19700 -10.08928 -10.06013 -9.71400 -9.31829 -8.74094 -8.54873 -8.46866 -6.64710 -5.77660 -3.22087 0.34363 1.20357 1.69522 1.79002 2.37293 3.03284 3.24651 3.33830 3.36670 3.44769 3.46245 3.81228 4.11931 4.48256 4.49535 4.53709 4.67729 4.94896 5.05664 5.29215 5.33919 5.34456 5.38398 5.41283 5.52883 5.57598 5.61150 5.64720 5.94585 5.96654 6.08701 6.18363 6.28796 6.32819 6.42562 6.52316 6.53573 6.57916 6.70604 6.88624 6.98771 7.03959 7.36487 7.56186 7.68484 7.82057 7.82351 8.24751 8.45639 9.21414 9.84930 10.41396 11.30472 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002417 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.496010 B =11582.750581 C =12177.332283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.020 0.980 4 C -0.139 4.139 5 C 0.153 3.847 6 H 0.077 0.923 7 N -0.693 5.693 8 C 0.596 3.404 9 O -0.528 6.528 10 C -0.014 4.014 11 C -0.150 4.150 12 C 0.029 3.971 13 C 0.045 3.955 14 C -0.158 4.158 15 C -0.214 4.214 16 C -0.016 4.016 17 O -0.158 6.158 18 O 0.145 5.855 19 N -0.315 5.315 20 C -0.155 4.155 21 C 0.174 3.826 22 N -0.586 5.586 23 C -0.249 4.249 24 H 0.071 0.929 25 C 0.001 3.999 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.408 0.592 37 H 0.187 0.813 38 H 0.161 0.839 39 H 0.157 0.843 40 H 0.213 0.787 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.017 0.983 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.241 12.323 -13.889 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.037 0.963 4 C -0.179 4.179 5 C 0.050 3.950 6 H 0.095 0.905 7 N -0.344 5.344 8 C 0.379 3.621 9 O -0.404 6.404 10 C -0.172 4.172 11 C -0.172 4.172 12 C -0.034 4.034 13 C -0.005 4.005 14 C -0.178 4.178 15 C -0.233 4.233 16 C -0.085 4.085 17 O -0.054 6.054 18 O 0.065 5.935 19 N -0.013 5.013 20 C -0.195 4.195 21 C 0.048 3.952 22 N -0.310 5.310 23 C -0.379 4.379 24 H 0.089 0.911 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.731 3.269 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.245 0.755 37 H 0.204 0.796 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.106 0.894 44 H 0.035 0.965 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.535 11.480 -13.622 21.222 hybrid contribution 0.124 -0.157 0.731 0.758 sum 11.659 11.323 -12.890 20.744 Atomic orbital electron populations 1.21798 0.95703 1.01525 1.00362 1.20401 0.93308 0.93143 0.87227 0.96259 1.22377 0.93547 1.02573 0.99382 1.21025 0.93345 0.81489 0.99175 0.90530 1.46060 1.13080 1.13413 1.61884 1.16791 0.82222 0.84444 0.78677 1.90778 1.60922 1.42226 1.46466 1.23477 0.94290 0.95381 1.04064 1.22716 0.97456 0.93180 1.03801 1.20458 0.87253 0.92273 1.03415 1.18047 0.84348 0.91579 1.06574 1.22020 0.99284 0.93026 1.03479 1.21832 0.94676 1.00953 1.05812 1.24351 0.96991 0.83505 1.03657 1.84067 1.20587 1.36512 1.64221 1.84957 1.17909 1.31051 1.59534 1.74239 1.15528 0.95220 1.16334 1.22583 1.00035 0.99531 0.97326 1.20727 0.83152 0.97150 0.94129 1.44140 1.02917 1.65002 1.18918 1.19212 0.94883 1.37581 0.86212 0.91145 1.25099 0.97833 0.99769 0.96999 1.70030 1.23434 1.44525 1.16702 0.86248 0.79638 0.79527 0.81503 1.20281 1.21663 1.21811 0.91868 0.94282 0.92632 0.92468 0.90308 0.75502 0.79562 0.82125 0.82510 0.77086 0.91426 0.92679 0.89366 0.96526 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.29 3.19 -67.59 -0.22 3.07 16 3 H 0.02 0.40 6.64 -51.93 -0.34 0.06 16 4 C -0.14 -2.33 5.08 -26.61 -0.14 -2.47 16 5 C 0.15 2.69 2.78 -67.90 -0.19 2.50 16 6 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 7 N -0.69 -11.99 4.26 -54.56 -0.23 -12.23 16 8 C 0.60 10.39 7.81 -12.10 -0.09 10.30 16 9 O -0.53 -10.23 16.61 5.37 0.09 -10.14 16 10 C -0.01 -0.22 7.17 -82.66 -0.59 -0.81 16 11 C -0.15 -1.94 10.96 -38.65 -0.42 -2.37 16 12 C 0.03 0.35 7.30 -36.42 -0.27 0.08 16 13 C 0.05 0.46 7.17 -36.71 -0.26 0.20 16 14 C -0.16 -1.31 10.86 -39.34 -0.43 -1.74 16 15 C -0.21 -1.36 10.88 -39.84 -0.43 -1.79 16 16 C -0.02 -0.10 12.08 29.54 0.36 0.26 16 17 O -0.16 -1.47 10.67 4.55 0.05 -1.42 16 18 O 0.15 1.88 11.21 15.71 0.18 2.06 16 19 N -0.32 -4.75 11.81 33.36 0.39 -4.36 16 20 C -0.15 -3.08 5.77 -26.61 -0.15 -3.24 16 21 C 0.17 4.15 5.03 -3.71 -0.02 4.13 16 22 N -0.59 -14.06 2.99 -164.76 -0.49 -14.56 16 23 C -0.25 -6.57 8.60 -15.06 -0.13 -6.70 16 24 H 0.07 1.81 6.21 -52.49 -0.33 1.49 16 25 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 26 N -0.90 -26.07 11.14 55.49 0.62 -25.46 16 27 Si 0.90 21.58 29.58 -169.99 -5.03 16.55 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H 0.06 1.25 7.62 -51.93 -0.40 0.85 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.41 7.09 6.62 -40.82 -0.27 6.82 16 37 H 0.19 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 40 H 0.21 0.40 8.06 -52.49 -0.42 -0.03 16 41 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 44 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -31.54 374.35 -7.34 -38.88 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -5.77 Total: 5.83 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.78 Total: -0.80 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.29 Total: -56.60 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.31 Total: -9.50 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.54 -7.34 -38.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947595547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.959 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds