Wall clock time and date at job start Sat Apr 11 2020 07:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 109.58064 * 2 1 4 4 C 1.53194 * 109.70309 * 239.64536 * 2 1 3 5 5 C 1.53038 * 109.30763 * 185.50671 * 4 2 1 6 6 H 1.09003 * 109.44660 * 181.37568 * 5 4 2 7 7 N 1.46493 * 109.46377 * 301.34095 * 5 4 2 8 8 C 1.34774 * 120.00332 * 205.07103 * 7 5 4 9 9 O 1.21493 * 119.99703 * 359.72392 * 8 7 5 10 10 C 1.48350 * 120.00177 * 179.72775 * 8 7 5 11 11 C 1.41712 * 126.80856 * 179.70902 * 10 8 7 12 12 C 1.37156 * 103.79440 * 179.89024 * 11 10 8 13 13 C 1.47011 * 126.86370 * 180.09724 * 12 11 10 14 14 C 1.36335 * 125.97074 * 180.30606 * 13 12 11 15 15 C 1.40698 * 106.72310 * 179.97438 * 14 13 12 16 16 C 1.34892 * 107.08078 * 359.97438 * 15 14 13 17 17 O 1.34229 * 108.73023 * 359.77314 * 16 15 14 18 18 O 1.34584 * 106.28251 * 0.36709 * 12 11 10 19 19 N 1.20878 * 111.69004 * 359.75303 * 18 12 11 20 20 C 1.53036 * 109.53856 * 61.36676 * 5 4 2 21 21 C 1.53194 * 109.31398 * 298.63033 * 20 5 4 22 22 N 1.46928 * 109.58229 * 120.27997 * 2 1 3 23 23 C 1.36932 * 120.63364 * 353.56528 * 22 2 1 24 24 H 1.07997 * 120.00212 * 28.99694 * 23 22 2 25 25 C 1.38816 * 119.99864 * 208.99538 * 23 22 2 26 26 N 1.31627 * 119.99750 * 15.03159 * 25 23 22 27 27 Si 1.86796 * 120.00032 * 195.02565 * 25 23 22 28 28 H 1.48494 * 109.47012 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46725 * 120.00373 * 27 25 23 30 30 H 1.48493 * 109.47183 * 240.00090 * 27 25 23 31 31 H 1.08997 * 109.46908 * 299.71518 * 1 2 3 32 32 H 1.09002 * 109.46865 * 59.71390 * 1 2 3 33 33 H 1.08998 * 109.46624 * 179.71716 * 1 2 3 34 34 H 1.08999 * 109.49605 * 65.55191 * 4 2 1 35 35 H 1.08995 * 109.49450 * 305.45835 * 4 2 1 36 36 H 0.97001 * 119.99873 * 24.79794 * 7 5 4 37 37 H 1.08003 * 128.10882 * 0.02562 * 11 10 8 38 38 H 1.08002 * 126.63808 * 359.91980 * 14 13 12 39 39 H 1.08001 * 126.46136 * 180.02562 * 15 14 13 40 40 H 1.08000 * 125.63144 * 179.97438 * 16 15 14 41 41 H 1.09005 * 109.50316 * 58.58547 * 20 5 4 42 42 H 1.09002 * 109.49872 * 178.67752 * 20 5 4 43 43 H 1.08998 * 109.58573 * 174.42298 * 21 20 5 44 44 H 1.09001 * 109.58495 * 294.70651 * 21 20 5 45 45 H 0.96992 * 119.99577 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7288 -1.2445 5 6 3.5707 -0.8442 -1.1673 6 1 3.9429 -1.3409 -2.0634 7 7 4.1574 0.4947 -1.0720 8 6 5.4210 0.7080 -1.4892 9 8 6.0753 -0.2113 -1.9397 10 6 6.0131 2.0652 -1.3983 11 6 7.3208 2.4488 -1.7867 12 6 7.3659 3.7901 -1.5036 13 6 8.5023 4.6984 -1.7149 14 6 8.5291 6.0294 -1.4209 15 6 9.8051 6.4985 -1.7832 16 6 10.4896 5.4452 -2.2748 17 8 9.7021 4.3592 -2.2271 18 8 6.1639 4.1075 -0.9880 19 7 5.4318 3.1469 -0.9372 20 6 3.9602 -1.6607 0.0670 21 6 3.4654 -0.9424 1.3265 22 7 2.0225 -0.6980 1.1954 23 6 1.1533 -1.1133 2.1686 24 1 0.1365 -1.3700 1.9107 25 6 1.5791 -1.2044 3.4867 26 7 2.7006 -0.6235 3.8576 27 14 0.5606 -2.1511 4.7339 28 1 -0.6456 -2.7060 4.0690 29 1 1.3716 -3.2617 5.2944 30 1 0.1466 -1.2386 5.8298 31 1 -0.3633 0.5094 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3632 -1.0277 -0.0051 34 1 1.7689 -0.1672 -2.1365 35 1 1.6081 -1.7256 -1.2905 36 1 3.6350 1.2286 -0.7124 37 1 8.0991 1.8304 -2.2090 38 1 7.7258 6.6113 -0.9936 39 1 10.1684 7.5108 -1.6854 40 1 11.5047 5.4707 -2.6426 41 1 3.5038 -2.6488 0.0087 42 1 5.0447 -1.7624 0.1086 43 1 3.6524 -1.5665 2.2003 44 1 3.9905 0.0065 1.4360 45 1 2.9983 -0.6875 4.7785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947595547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:06 Heat of formation + Delta-G solvation = 53.664372 kcal Electronic energy + Delta-G solvation = -29967.560106 eV Core-core repulsion = 25762.518772 eV Total energy + Delta-G solvation = -4205.041334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.32069 -43.55509 -41.26961 -39.30711 -36.05557 -35.36301 -34.51901 -34.14694 -33.72153 -32.80397 -31.40384 -29.83330 -28.09727 -26.98119 -26.10925 -24.59017 -23.87184 -23.29985 -22.39312 -22.29828 -21.41299 -20.30355 -19.89702 -19.14185 -18.31745 -18.15121 -17.63190 -17.15209 -17.06445 -16.75157 -16.26971 -16.10971 -15.74395 -15.55147 -15.35026 -15.06269 -14.79668 -14.50485 -14.19436 -13.89973 -13.72837 -13.48812 -13.40387 -13.25667 -12.93628 -12.89602 -12.71423 -12.49534 -12.37207 -12.17704 -11.99522 -11.78735 -11.74674 -11.72224 -11.51760 -11.47490 -11.03318 -10.89093 -10.54196 -10.21709 -9.25215 -8.62930 -7.83797 -5.29881 -0.51555 0.06899 0.91411 1.13275 1.44962 1.47552 1.56913 1.71059 1.75296 1.95161 2.51629 2.60987 2.67698 3.18043 3.31673 3.58541 3.62066 3.81459 3.93493 3.97877 4.00417 4.01831 4.14506 4.21490 4.38545 4.55634 4.60883 4.62038 4.74209 4.75611 4.87459 4.91195 4.94874 4.98095 5.00000 5.05557 5.11737 5.36357 5.40851 5.47234 5.50487 5.53776 5.71450 5.73718 5.95442 6.22063 6.42617 6.70944 6.88172 7.17158 7.89216 8.40959 9.22702 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002417 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.496010 B =11582.750581 C =12177.332283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.157 3.843 3 H 0.015 0.985 4 C -0.125 4.125 5 C 0.157 3.843 6 H 0.090 0.910 7 N -0.693 5.693 8 C 0.596 3.404 9 O -0.551 6.551 10 C -0.032 4.032 11 C -0.164 4.164 12 C 0.050 3.950 13 C 0.003 3.997 14 C -0.147 4.147 15 C -0.224 4.224 16 C 0.001 3.999 17 O -0.175 6.175 18 O 0.152 5.848 19 N -0.335 5.335 20 C -0.143 4.143 21 C 0.187 3.813 22 N -0.601 5.601 23 C -0.244 4.244 24 H 0.079 0.921 25 C -0.057 4.057 26 N -0.939 5.939 27 Si 0.962 3.038 28 H -0.263 1.263 29 H -0.296 1.296 30 H -0.297 1.297 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.408 0.592 37 H 0.198 0.802 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.254 0.746 41 H 0.072 0.928 42 H 0.048 0.952 43 H 0.050 0.950 44 H -0.010 1.010 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.589 13.551 -15.919 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 H 0.032 0.968 4 C -0.165 4.165 5 C 0.053 3.947 6 H 0.108 0.892 7 N -0.343 5.343 8 C 0.381 3.619 9 O -0.428 6.428 10 C -0.189 4.189 11 C -0.186 4.186 12 C -0.013 4.013 13 C -0.047 4.047 14 C -0.167 4.167 15 C -0.242 4.242 16 C -0.067 4.067 17 O -0.071 6.071 18 O 0.071 5.929 19 N -0.033 5.033 20 C -0.183 4.183 21 C 0.061 3.939 22 N -0.325 5.325 23 C -0.374 4.374 24 H 0.097 0.903 25 C -0.252 4.252 26 N -0.586 5.586 27 Si 0.791 3.209 28 H -0.187 1.187 29 H -0.223 1.223 30 H -0.224 1.224 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.244 0.756 37 H 0.215 0.785 38 H 0.189 0.811 39 H 0.202 0.798 40 H 0.270 0.730 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.008 0.992 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.841 12.708 -15.683 23.402 hybrid contribution 0.164 -0.338 1.304 1.357 sum 12.005 12.370 -14.379 22.447 Atomic orbital electron populations 1.21732 0.94152 1.01681 1.01127 1.20667 0.94657 0.92835 0.86689 0.96790 1.22256 0.92379 1.02994 0.98824 1.20989 0.94210 0.81371 0.98093 0.89161 1.46053 1.13226 1.13241 1.61823 1.17008 0.81956 0.85045 0.77932 1.90750 1.61358 1.43194 1.47530 1.23317 0.95391 0.94696 1.05492 1.22821 0.96927 0.93880 1.04964 1.20706 0.87096 0.92232 1.01279 1.17978 0.84712 0.91970 1.10089 1.22397 1.00450 0.92360 1.01510 1.22218 0.93748 1.02460 1.05817 1.25331 0.97848 0.82414 1.01105 1.84069 1.20536 1.37997 1.64474 1.84907 1.18349 1.30342 1.59254 1.74215 1.16374 0.95489 1.17189 1.22399 0.99467 0.99724 0.96674 1.20391 0.83545 0.95419 0.94568 1.44373 1.02550 1.65707 1.19831 1.19567 0.95323 1.35920 0.86627 0.90325 1.25830 0.99083 1.01323 0.98967 1.70199 1.25343 1.46622 1.16470 0.85278 0.78607 0.77862 0.79169 1.18672 1.22343 1.22397 0.94093 0.90529 0.92733 0.89165 0.89624 0.75575 0.78519 0.81071 0.79758 0.72991 0.90920 0.93323 0.93179 0.99217 0.94599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.95 71.99 0.57 -3.87 16 2 C 0.16 6.05 3.19 44.98 0.14 6.19 16 3 H 0.01 0.58 6.64 -2.39 -0.02 0.56 16 4 C -0.13 -3.91 5.08 30.67 0.16 -3.75 16 5 C 0.16 5.36 2.78 45.02 0.13 5.49 16 6 H 0.09 2.92 7.58 -2.39 -0.02 2.91 16 7 N -0.69 -24.01 4.26 -444.82 -1.90 -25.91 16 8 C 0.60 21.13 7.81 86.94 0.68 21.81 16 9 O -0.55 -21.53 16.61 -3.69 -0.06 -21.59 16 10 C -0.03 -1.02 7.17 42.80 0.31 -0.71 16 11 C -0.16 -4.34 10.96 22.87 0.25 -4.08 16 12 C 0.05 1.19 7.30 24.32 0.18 1.37 16 13 C 0.00 0.05 7.17 24.13 0.17 0.22 16 14 C -0.15 -2.17 10.86 22.43 0.24 -1.93 16 15 C -0.22 -2.14 10.88 22.10 0.24 -1.90 16 16 C 0.00 0.01 12.08 67.05 0.81 0.82 16 17 O -0.17 -2.96 10.67 -6.64 -0.07 -3.03 16 18 O 0.15 3.98 11.21 66.41 0.74 4.73 16 19 N -0.34 -10.34 11.81 -48.87 -0.58 -10.92 16 20 C -0.14 -5.75 5.77 30.67 0.18 -5.57 16 21 C 0.19 9.24 5.03 86.36 0.43 9.68 16 22 N -0.60 -29.11 2.99 -675.19 -2.02 -31.13 16 23 C -0.24 -12.95 8.60 84.04 0.72 -12.23 16 24 H 0.08 3.99 6.21 -2.91 -0.02 3.97 16 25 C -0.06 -3.21 4.96 84.86 0.42 -2.79 16 26 N -0.94 -56.52 11.14 21.65 0.24 -56.28 16 27 Si 0.96 45.24 29.58 68.60 2.03 47.27 16 28 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 29 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 30 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 31 H 0.04 1.56 7.62 -2.39 -0.02 1.55 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.87 7.44 -2.39 -0.02 1.85 16 34 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.41 14.28 6.62 -92.71 -0.61 13.67 16 37 H 0.20 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 40 H 0.25 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.05 2.85 6.06 -2.39 -0.01 2.84 16 44 H -0.01 -0.55 7.74 -2.39 -0.02 -0.57 16 45 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -71.10 374.35 4.45 -66.65 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.42 Total: 21.46 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 5.63 Total: 8.75 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -4.25 Total: -124.24 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.61 Total: -19.90 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.10 4.45 -66.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947595547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.318 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds